Wall clock time and date at job start Tue Mar 31 2020 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.94292 * 2 1 4 4 C 1.38140 * 120.05199 * 180.25834 * 3 2 1 5 5 C 1.38731 * 119.94496 * 359.46418 * 4 3 2 6 6 O 1.35906 * 120.05879 * 180.29763 * 5 4 3 7 7 C 1.42897 * 117.00254 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46992 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46812 * 64.99991 * 8 7 6 10 10 C 1.46903 * 110.99584 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46866 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47031 * 305.00433 * 11 10 9 13 13 O 1.42900 * 109.47112 * 65.00266 * 11 10 9 14 14 C 1.52998 * 109.47088 * 185.00304 * 11 10 9 15 15 N 1.46902 * 109.47360 * 178.51229 * 14 11 10 16 16 C 1.46899 * 111.00301 * 164.01019 * 15 14 11 17 17 C 1.46902 * 110.99844 * 287.96591 * 15 14 11 18 18 C 1.50694 * 109.47303 * 169.99887 * 17 15 14 19 19 H 1.08002 * 120.00145 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00427 * 180.02562 * 18 17 15 21 21 N 1.31524 * 119.99705 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00428 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46863 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47450 * 119.99795 * 22 20 18 25 25 H 1.48496 * 109.46830 * 239.99729 * 22 20 18 26 26 C 1.38727 * 119.89200 * 0.27956 * 5 4 3 27 27 C 1.38152 * 119.93981 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47028 * 270.25606 * 1 2 3 29 29 H 1.09004 * 109.47233 * 30.24928 * 1 2 3 30 30 H 1.08992 * 109.47552 * 150.25445 * 1 2 3 31 31 H 1.08003 * 119.97294 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.02965 * 179.73948 * 4 3 2 33 33 H 1.08990 * 109.47011 * 300.00156 * 7 6 5 34 34 H 1.09002 * 109.47092 * 60.00711 * 7 6 5 35 35 H 1.09002 * 109.46876 * 184.99874 * 8 7 6 36 36 H 1.09001 * 109.47234 * 305.00005 * 8 7 6 37 37 H 1.00900 * 110.99595 * 56.04633 * 9 8 7 38 38 H 1.09000 * 109.47064 * 300.00248 * 10 9 8 39 39 H 1.09002 * 109.46699 * 60.00165 * 10 9 8 40 40 H 0.96700 * 113.99703 * 59.99802 * 13 11 10 41 41 H 1.09006 * 109.47068 * 298.50940 * 14 11 10 42 42 H 1.08997 * 109.47536 * 58.50908 * 14 11 10 43 43 H 1.08999 * 109.46970 * 65.48070 * 16 15 14 44 44 H 1.08998 * 109.47014 * 185.48587 * 16 15 14 45 45 H 1.09005 * 109.46892 * 305.48252 * 16 15 14 46 46 H 1.09004 * 109.46753 * 290.00022 * 17 15 14 47 47 H 1.08997 * 109.47269 * 49.99355 * 17 15 14 48 48 H 0.96994 * 120.00011 * 180.02562 * 21 20 18 49 49 H 1.07998 * 120.03533 * 180.02562 * 26 5 4 50 50 H 1.08004 * 119.96836 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5785 1.2008 -0.0054 5 6 4.2733 0.0000 0.0004 6 8 5.6324 0.0000 0.0013 7 6 6.2811 -1.2733 0.0068 8 6 7.7980 -1.0728 0.0076 9 7 8.2054 -0.4235 1.2608 10 6 9.6591 -0.2150 1.2972 11 6 10.0445 0.4611 2.6144 12 1 9.4705 1.3801 2.7326 13 8 9.7616 -0.4205 3.7029 14 6 11.5384 0.7911 2.6004 15 7 11.9013 1.4722 3.8503 16 6 13.3568 1.4680 4.0489 17 6 11.3703 2.8417 3.8769 18 6 11.5456 3.4218 5.2566 19 1 12.0051 2.8320 6.0360 20 6 11.1185 4.7050 5.5243 21 7 10.5585 5.4231 4.5753 22 14 11.3365 5.4244 7.2344 23 1 11.9889 4.4213 8.1138 24 1 12.1850 6.6405 7.1555 25 1 10.0083 5.7830 7.7935 26 6 3.5786 -1.2007 0.0058 27 6 2.1971 -1.1980 0.0059 28 1 -0.3633 0.0046 1.0277 29 1 -0.3634 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6558 2.1327 0.0004 32 1 4.1172 2.1368 -0.0096 33 1 5.9877 -1.8266 0.8988 34 1 5.9889 -1.8338 -0.8812 35 1 8.2924 -2.0405 -0.0778 36 1 8.0818 -0.4440 -0.8364 37 1 7.8965 -0.9554 2.0606 38 1 10.1661 -1.1769 1.2210 39 1 9.9562 0.4195 0.4621 40 1 10.2390 -1.2605 3.6630 41 1 12.1132 -0.1306 2.5088 42 1 11.7588 1.4422 1.7545 43 1 13.8314 2.0655 3.2706 44 1 13.5914 1.8909 5.0257 45 1 13.7275 0.4441 3.9977 46 1 11.9091 3.4543 3.1539 47 1 10.3108 2.8256 3.6214 48 1 10.2583 6.3260 4.7635 49 1 4.1172 -2.1368 0.0108 50 1 1.6558 -2.1326 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578498751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:41 Heat of formation + Delta-G solvation = -61.804038 kcal Electronic energy + Delta-G solvation = -26442.672151 eV Core-core repulsion = 22663.023538 eV Total energy + Delta-G solvation = -3779.648612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.27775 -38.36672 -37.83052 -35.98809 -34.91962 -32.43363 -32.24721 -31.23662 -30.61878 -28.60574 -27.23151 -26.40698 -25.28395 -23.67172 -23.05333 -22.00708 -21.49425 -21.12009 -19.97053 -18.45308 -16.77421 -16.35250 -16.18599 -15.92093 -15.74594 -15.46666 -14.87470 -14.72994 -14.65418 -14.27856 -14.18285 -13.84218 -13.73244 -13.65197 -13.34363 -13.25238 -13.03726 -12.44890 -12.36824 -12.12203 -11.94420 -11.80235 -11.70157 -11.59945 -11.34537 -11.12926 -10.91883 -10.88982 -10.86296 -10.66546 -10.57669 -10.30101 -9.70250 -9.56233 -9.17221 -9.06877 -8.43544 -8.35712 -8.16137 -7.16059 -5.95355 -3.95749 1.17316 1.27094 3.07239 3.36328 3.43447 3.48606 3.58783 3.94549 4.49076 4.53319 4.66468 4.72982 4.76367 4.76741 4.83138 4.94851 5.03198 5.07855 5.17319 5.17652 5.33249 5.36430 5.38697 5.43202 5.44137 5.54035 5.57705 5.62485 5.69909 5.75760 5.83916 5.88069 6.07556 6.11893 6.13642 6.20573 6.37018 6.43331 6.57587 6.63507 6.74357 6.92762 7.31277 7.35562 7.37475 7.39923 7.86348 8.10368 8.17360 8.26725 8.61906 9.11525 9.67798 11.15818 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.002275 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.961579 B =12305.927537 C =14131.251667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.133 4.133 3 C -0.080 4.080 4 C -0.147 4.147 5 C 0.131 3.869 6 O -0.294 6.294 7 C 0.064 3.936 8 C 0.059 3.941 9 N -0.677 5.677 10 C 0.031 3.969 11 C 0.114 3.886 12 H 0.114 0.886 13 O -0.541 6.541 14 C 0.027 3.973 15 N -0.531 5.531 16 C 0.040 3.960 17 C 0.192 3.808 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.053 3.947 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.284 1.284 26 C -0.210 4.210 27 C -0.082 4.082 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.348 0.652 38 H 0.027 0.973 39 H 0.079 0.921 40 H 0.358 0.642 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.010 0.990 44 H 0.073 0.927 45 H 0.041 0.959 46 H -0.012 1.012 47 H 0.034 0.966 48 H 0.260 0.740 49 H 0.125 0.875 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -16.879 -13.638 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.098 4.098 4 C -0.166 4.166 5 C 0.085 3.915 6 O -0.207 6.207 7 C -0.012 4.012 8 C -0.070 4.070 9 N -0.309 5.309 10 C -0.099 4.099 11 C 0.054 3.946 12 H 0.131 0.869 13 O -0.344 6.344 14 C -0.103 4.103 15 N -0.255 5.255 16 C -0.108 4.108 17 C 0.067 3.933 18 C -0.542 4.542 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.539 5.539 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.210 1.210 26 C -0.229 4.229 27 C -0.100 4.100 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.167 0.833 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.203 0.797 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.143 0.857 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.114 -15.665 -13.326 24.943 hybrid contribution 1.176 -0.625 0.064 1.333 sum -12.937 -16.290 -13.262 24.670 Atomic orbital electron populations 1.20702 0.91238 1.02431 1.02098 1.19805 0.96127 0.93111 1.04268 1.20864 0.93046 0.97760 0.98149 1.20512 0.93749 0.96720 1.05596 1.19093 0.82872 0.94045 0.95519 1.86243 1.15516 1.31031 1.87910 1.22834 0.92808 0.84485 1.01058 1.22004 0.92174 0.97978 0.94845 1.60290 1.13165 1.53816 1.03657 1.22690 0.87712 0.99199 1.00272 1.22013 0.95074 0.93826 0.83656 0.86852 1.86716 1.69576 1.30225 1.47832 1.22656 0.96012 0.98489 0.93128 1.62049 1.10850 1.21525 1.31103 1.22193 0.88599 0.98506 1.01550 1.19792 0.95306 0.81270 0.96976 1.21184 1.38889 0.97993 0.96108 0.91887 1.24994 0.95444 0.97108 0.97203 1.69972 1.41235 1.10222 1.32440 0.86451 0.77761 0.78822 0.84444 1.19705 1.21221 1.20999 1.21223 0.95351 0.97014 1.09315 1.20783 0.93295 0.97560 0.98379 0.91495 0.91743 0.91913 0.85466 0.84917 0.92040 0.91770 0.93364 0.89843 0.83314 0.95444 0.90284 0.79721 0.92353 0.95067 0.97178 0.90796 0.93982 0.99412 0.94851 0.93045 0.85724 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.13 -1.24 5.88 -104.60 -0.62 -1.86 16 3 C -0.08 -0.81 9.69 -39.61 -0.38 -1.19 16 4 C -0.15 -1.74 9.99 -39.44 -0.39 -2.13 16 5 C 0.13 1.59 6.69 -39.22 -0.26 1.33 16 6 O -0.29 -3.81 10.08 -19.44 -0.20 -4.00 16 7 C 0.06 0.61 5.02 37.16 0.19 0.79 16 8 C 0.06 0.58 6.07 -3.82 -0.02 0.56 16 9 N -0.68 -8.59 6.45 -113.77 -0.73 -9.32 16 10 C 0.03 0.40 5.36 -3.82 -0.02 0.38 16 11 C 0.11 1.90 3.23 -26.73 -0.09 1.81 16 12 H 0.11 2.36 6.55 -51.93 -0.34 2.02 16 13 O -0.54 -9.04 12.75 -35.23 -0.45 -9.49 16 14 C 0.03 0.47 4.63 -3.82 -0.02 0.45 16 15 N -0.53 -11.68 4.60 -244.37 -1.12 -12.80 16 16 C 0.04 0.79 9.32 60.06 0.56 1.35 16 17 C 0.19 5.14 4.57 -4.98 -0.02 5.11 16 18 C -0.50 -14.62 8.53 -34.44 -0.29 -14.92 16 19 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 22 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 C -0.21 -2.14 9.04 -39.43 -0.36 -2.50 16 27 C -0.08 -0.76 9.69 -39.61 -0.38 -1.15 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.35 4.35 8.29 -39.29 -0.33 4.03 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.36 4.42 9.05 45.56 0.41 4.84 16 41 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 42 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 43 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 44 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 45 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 46 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 47 H 0.03 0.96 6.38 -51.93 -0.33 0.63 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 50 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 406.61 15.07 6.13 6.13 Total: -1.00 -33.88 406.61 -10.40 -44.28 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.88 Total: 5.50 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.85 Total: -10.85 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -1.12 Total: -48.87 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.65 Total: -13.49 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.88 -10.40 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578498751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.525 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds