Wall clock time and date at job start Tue Mar 31 2020 12:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.94292 * 2 1 4 4 C 1.38140 * 120.05199 * 180.25834 * 3 2 1 5 5 C 1.38731 * 119.94496 * 359.46418 * 4 3 2 6 6 O 1.35906 * 120.05879 * 180.29763 * 5 4 3 7 7 C 1.42897 * 117.00254 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46992 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46812 * 64.99991 * 8 7 6 10 10 C 1.46903 * 110.99584 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46866 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47031 * 305.00433 * 11 10 9 13 13 O 1.42900 * 109.47112 * 65.00266 * 11 10 9 14 14 C 1.52998 * 109.47088 * 185.00304 * 11 10 9 15 15 N 1.46902 * 109.47360 * 178.51229 * 14 11 10 16 16 C 1.46899 * 111.00301 * 164.01019 * 15 14 11 17 17 C 1.46902 * 110.99844 * 287.96591 * 15 14 11 18 18 C 1.50694 * 109.47303 * 169.99887 * 17 15 14 19 19 H 1.08002 * 120.00145 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00427 * 180.02562 * 18 17 15 21 21 N 1.31524 * 119.99705 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00428 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46863 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47450 * 119.99795 * 22 20 18 25 25 H 1.48496 * 109.46830 * 239.99729 * 22 20 18 26 26 C 1.38727 * 119.89200 * 0.27956 * 5 4 3 27 27 C 1.38152 * 119.93981 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47028 * 270.25606 * 1 2 3 29 29 H 1.09004 * 109.47233 * 30.24928 * 1 2 3 30 30 H 1.08992 * 109.47552 * 150.25445 * 1 2 3 31 31 H 1.08003 * 119.97294 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.02965 * 179.73948 * 4 3 2 33 33 H 1.08990 * 109.47011 * 300.00156 * 7 6 5 34 34 H 1.09002 * 109.47092 * 60.00711 * 7 6 5 35 35 H 1.09002 * 109.46876 * 184.99874 * 8 7 6 36 36 H 1.09001 * 109.47234 * 305.00005 * 8 7 6 37 37 H 1.00900 * 110.99595 * 56.04633 * 9 8 7 38 38 H 1.09000 * 109.47064 * 300.00248 * 10 9 8 39 39 H 1.09002 * 109.46699 * 60.00165 * 10 9 8 40 40 H 0.96700 * 113.99703 * 59.99802 * 13 11 10 41 41 H 1.09006 * 109.47068 * 298.50940 * 14 11 10 42 42 H 1.08997 * 109.47536 * 58.50908 * 14 11 10 43 43 H 1.08999 * 109.46970 * 65.48070 * 16 15 14 44 44 H 1.08998 * 109.47014 * 185.48587 * 16 15 14 45 45 H 1.09005 * 109.46892 * 305.48252 * 16 15 14 46 46 H 1.09004 * 109.46753 * 290.00022 * 17 15 14 47 47 H 1.08997 * 109.47269 * 49.99355 * 17 15 14 48 48 H 0.96994 * 120.00011 * 180.02562 * 21 20 18 49 49 H 1.07998 * 120.03533 * 180.02562 * 26 5 4 50 50 H 1.08004 * 119.96836 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5785 1.2008 -0.0054 5 6 4.2733 0.0000 0.0004 6 8 5.6324 0.0000 0.0013 7 6 6.2811 -1.2733 0.0068 8 6 7.7980 -1.0728 0.0076 9 7 8.2054 -0.4235 1.2608 10 6 9.6591 -0.2150 1.2972 11 6 10.0445 0.4611 2.6144 12 1 9.4705 1.3801 2.7326 13 8 9.7616 -0.4205 3.7029 14 6 11.5384 0.7911 2.6004 15 7 11.9013 1.4722 3.8503 16 6 13.3568 1.4680 4.0489 17 6 11.3703 2.8417 3.8769 18 6 11.5456 3.4218 5.2566 19 1 12.0051 2.8320 6.0360 20 6 11.1185 4.7050 5.5243 21 7 10.5585 5.4231 4.5753 22 14 11.3365 5.4244 7.2344 23 1 11.9889 4.4213 8.1138 24 1 12.1850 6.6405 7.1555 25 1 10.0083 5.7830 7.7935 26 6 3.5786 -1.2007 0.0058 27 6 2.1971 -1.1980 0.0059 28 1 -0.3633 0.0046 1.0277 29 1 -0.3634 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6558 2.1327 0.0004 32 1 4.1172 2.1368 -0.0096 33 1 5.9877 -1.8266 0.8988 34 1 5.9889 -1.8338 -0.8812 35 1 8.2924 -2.0405 -0.0778 36 1 8.0818 -0.4440 -0.8364 37 1 7.8965 -0.9554 2.0606 38 1 10.1661 -1.1769 1.2210 39 1 9.9562 0.4195 0.4621 40 1 10.2390 -1.2605 3.6630 41 1 12.1132 -0.1306 2.5088 42 1 11.7588 1.4422 1.7545 43 1 13.8314 2.0655 3.2706 44 1 13.5914 1.8909 5.0257 45 1 13.7275 0.4441 3.9977 46 1 11.9091 3.4543 3.1539 47 1 10.3108 2.8256 3.6214 48 1 10.2583 6.3260 4.7635 49 1 4.1172 -2.1368 0.0108 50 1 1.6558 -2.1326 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578498751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:40 Heat of formation + Delta-G solvation = -87.934843 kcal Electronic energy + Delta-G solvation = -26443.805267 eV Core-core repulsion = 22663.023538 eV Total energy + Delta-G solvation = -3780.781729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.06844 -39.62775 -38.73226 -37.43788 -36.09918 -34.61053 -32.99783 -32.00562 -31.69308 -29.87121 -29.18366 -27.16311 -26.60674 -25.22403 -24.14736 -22.84498 -22.79048 -21.94793 -21.60701 -19.24705 -18.63380 -17.68921 -17.26996 -17.00365 -16.75509 -16.56916 -16.27858 -16.13901 -15.77475 -15.51803 -15.28272 -15.05842 -14.85095 -14.46180 -14.39374 -14.34459 -14.10489 -13.93910 -13.71831 -13.15324 -13.10510 -12.89432 -12.82845 -12.71891 -12.58130 -12.54737 -12.40711 -12.35061 -12.29937 -12.16237 -11.65730 -11.60505 -11.50426 -11.30617 -10.75395 -10.61497 -9.95082 -9.32689 -8.95895 -8.94768 -8.20581 -6.30401 0.39768 0.48634 1.38616 1.40572 1.53917 2.31975 2.39926 2.81077 2.93316 3.11872 3.42942 3.70801 3.81183 3.95470 3.98469 4.00870 4.09827 4.11863 4.19133 4.32095 4.35154 4.40999 4.45851 4.47149 4.51726 4.59417 4.62278 4.73055 4.77631 4.79957 4.84828 4.84919 4.89122 5.07486 5.11702 5.12438 5.18913 5.25715 5.31358 5.39902 5.42386 5.64591 5.70122 5.91136 6.02498 6.07419 6.34696 6.42405 6.57724 6.64896 6.86062 7.06794 7.38999 8.90996 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.002275 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.961579 B =12305.927537 C =14131.251667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.175 4.175 5 C 0.107 3.893 6 O -0.325 6.325 7 C 0.060 3.940 8 C 0.062 3.938 9 N -0.702 5.702 10 C 0.046 3.954 11 C 0.123 3.877 12 H 0.058 0.942 13 O -0.559 6.559 14 C 0.027 3.973 15 N -0.542 5.542 16 C 0.041 3.959 17 C 0.209 3.791 18 C -0.522 4.522 19 H 0.062 0.938 20 C -0.003 4.003 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.280 1.280 26 C -0.212 4.212 27 C -0.086 4.086 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.347 0.653 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.380 0.620 41 H 0.101 0.899 42 H 0.025 0.975 43 H 0.007 0.993 44 H 0.054 0.946 45 H 0.085 0.915 46 H -0.043 1.043 47 H 0.002 0.998 48 H 0.264 0.736 49 H 0.145 0.855 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 -19.532 -13.482 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C -0.106 4.106 4 C -0.194 4.194 5 C 0.061 3.939 6 O -0.239 6.239 7 C -0.015 4.015 8 C -0.066 4.066 9 N -0.335 5.335 10 C -0.083 4.083 11 C 0.063 3.937 12 H 0.076 0.924 13 O -0.365 6.365 14 C -0.102 4.102 15 N -0.266 5.266 16 C -0.107 4.107 17 C 0.083 3.917 18 C -0.560 4.560 19 H 0.080 0.920 20 C -0.201 4.201 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.205 1.205 26 C -0.231 4.231 27 C -0.104 4.104 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.119 0.881 42 H 0.044 0.956 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.103 0.897 46 H -0.025 1.025 47 H 0.020 0.980 48 H 0.072 0.928 49 H 0.162 0.838 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.284 -18.355 -13.184 26.735 hybrid contribution 1.205 0.133 -0.020 1.213 sum -13.079 -18.223 -13.204 26.028 Atomic orbital electron populations 1.20750 0.89161 1.03585 1.02795 1.20200 0.97723 0.92795 1.03083 1.21112 0.92446 0.99107 0.97926 1.20663 0.94831 0.96583 1.07333 1.19328 0.82852 0.94908 0.96801 1.86199 1.16178 1.33150 1.88337 1.23035 0.92371 0.83652 1.02450 1.22068 0.92592 0.99025 0.92955 1.60228 1.13150 1.55187 1.04944 1.22451 0.88333 1.00224 0.97333 1.21706 0.93663 0.92525 0.85819 0.92398 1.86662 1.70267 1.31435 1.48121 1.22790 0.97159 0.99439 0.90788 1.61944 1.12295 1.18398 1.33939 1.22223 0.87150 1.00971 1.00337 1.19377 0.93275 0.83770 0.95279 1.21516 1.38978 0.98549 0.96963 0.91989 1.25973 0.94869 0.97547 1.01687 1.70108 1.42040 1.10693 1.34841 0.85311 0.77936 0.78222 0.79015 1.18618 1.20135 1.20529 1.21473 0.95959 0.96984 1.08676 1.21175 0.93144 0.98712 0.97335 0.90895 0.90981 0.90456 0.83982 0.86222 0.91397 0.89388 0.90214 0.90643 0.83348 0.91931 0.90685 0.77234 0.88105 0.95643 0.97408 0.92743 0.89684 1.02514 0.98018 0.92753 0.83773 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 2 C -0.14 -2.42 5.88 -19.85 -0.12 -2.54 16 3 C -0.09 -1.80 9.69 22.25 0.22 -1.58 16 4 C -0.18 -4.44 9.99 22.36 0.22 -4.21 16 5 C 0.11 2.68 6.69 22.50 0.15 2.83 16 6 O -0.32 -8.70 10.08 -92.49 -0.93 -9.63 16 7 C 0.06 1.08 5.02 71.98 0.36 1.44 16 8 C 0.06 1.13 6.07 86.30 0.52 1.65 16 9 N -0.70 -17.59 6.45 -513.86 -3.32 -20.91 16 10 C 0.05 1.13 5.36 86.30 0.46 1.60 16 11 C 0.12 4.15 3.23 30.59 0.10 4.24 16 12 H 0.06 2.61 6.55 -2.39 -0.02 2.60 16 13 O -0.56 -18.36 12.75 -148.98 -1.90 -20.26 16 14 C 0.03 0.94 4.63 86.30 0.40 1.34 16 15 N -0.54 -23.99 4.60 -927.05 -4.27 -28.25 16 16 C 0.04 1.59 9.32 127.69 1.19 2.78 16 17 C 0.21 11.77 4.57 85.55 0.39 12.17 16 18 C -0.52 -31.19 8.53 25.60 0.22 -30.97 16 19 H 0.06 3.64 7.10 -2.91 -0.02 3.62 16 20 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 21 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 22 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 C -0.21 -4.14 9.04 22.37 0.20 -3.93 16 27 C -0.09 -1.45 9.69 22.25 0.22 -1.24 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 30 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 34 H 0.09 1.13 7.66 -2.39 -0.02 1.11 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.35 8.55 8.29 -89.69 -0.74 7.81 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.38 8.48 9.05 -74.06 -0.67 7.81 16 41 H 0.10 2.62 7.88 -2.38 -0.02 2.60 16 42 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 43 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 44 H 0.05 2.28 6.90 -2.39 -0.02 2.27 16 45 H 0.08 2.53 7.97 -2.38 -0.02 2.52 16 46 H -0.04 -2.60 8.11 -2.38 -0.02 -2.62 16 47 H 0.00 0.11 6.38 -2.39 -0.02 0.09 16 48 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 49 H 0.14 2.09 6.30 -2.91 -0.02 2.08 16 50 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -77.48 406.61 -2.88 -80.36 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.49 Total: 25.79 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 5.71 Total: -16.65 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -7.30 Total: -108.00 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.83 Total: -29.89 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.48 -2.88 -80.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578498751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.572 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds