Wall clock time and date at job start Tue Mar 31 2020 13:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.52678 * 2 1 4 4 C 1.53172 * 109.52033 * 120.13065 * 2 1 3 5 5 C 1.53186 * 109.03752 * 176.88539 * 4 2 1 6 6 C 1.53090 * 109.15806 * 303.01526 * 5 4 2 7 7 H 1.08999 * 109.48531 * 297.62538 * 6 5 4 8 8 C 1.53002 * 109.47997 * 177.59134 * 6 5 4 9 9 C 1.50693 * 109.47542 * 175.00155 * 8 6 5 10 10 O 1.21287 * 120.00011 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00322 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00293 * 180.02562 * 11 9 8 13 13 H 1.09007 * 115.51165 * 9.58147 * 12 11 9 14 14 C 1.52999 * 117.44123 * 224.24143 * 12 11 9 15 15 H 1.08997 * 119.54283 * 4.11732 * 14 12 11 16 16 C 1.57691 * 116.10904 * 161.63750 * 14 12 11 17 17 N 1.48145 * 104.67965 * 87.30670 * 16 14 12 18 18 C 1.36935 * 127.84145 * 139.77184 * 17 16 14 19 19 H 1.07997 * 119.99916 * 344.35873 * 18 17 16 20 20 C 1.38812 * 119.99813 * 164.35876 * 18 17 16 21 21 N 1.31621 * 120.00158 * 350.57506 * 20 18 17 22 22 Si 1.86802 * 119.99850 * 170.57200 * 20 18 17 23 23 H 1.48497 * 109.47004 * 89.99818 * 22 20 18 24 24 H 1.48500 * 109.47198 * 209.99792 * 22 20 18 25 25 H 1.48497 * 109.47102 * 329.99900 * 22 20 18 26 26 C 1.48153 * 104.31738 * 319.77427 * 17 16 14 27 27 C 1.52997 * 117.44669 * 154.99924 * 12 11 9 28 28 H 1.09006 * 119.53397 * 355.88064 * 27 12 11 29 29 O 1.42898 * 109.41634 * 57.61141 * 6 5 4 30 30 C 1.42907 * 114.09643 * 298.83909 * 29 6 5 31 31 H 1.08998 * 109.47302 * 299.87295 * 1 2 3 32 32 H 1.09000 * 109.47182 * 59.87282 * 1 2 3 33 33 H 1.08996 * 109.47524 * 179.87370 * 1 2 3 34 34 H 1.09001 * 109.47650 * 180.12702 * 3 2 1 35 35 H 1.08996 * 109.47313 * 300.12859 * 3 2 1 36 36 H 1.09000 * 109.47330 * 60.12358 * 3 2 1 37 37 H 1.08995 * 109.55054 * 57.01491 * 4 2 1 38 38 H 1.09006 * 109.61698 * 296.79144 * 4 2 1 39 39 H 1.08999 * 109.52108 * 62.92009 * 5 4 2 40 40 H 1.09002 * 109.51857 * 183.11214 * 5 4 2 41 41 H 1.09002 * 109.46831 * 295.00449 * 8 6 5 42 42 H 1.08998 * 109.46957 * 54.99616 * 8 6 5 43 43 H 0.97002 * 120.00063 * 359.97438 * 11 9 8 44 44 H 1.09000 * 110.92386 * 328.22408 * 16 14 12 45 45 H 1.09001 * 109.93613 * 205.88846 * 16 14 12 46 46 H 0.97002 * 119.99822 * 180.02562 * 21 20 18 47 47 H 1.08998 * 110.40963 * 280.79647 * 26 17 16 48 48 H 1.09001 * 110.50037 * 158.42128 * 26 17 16 49 49 H 1.08997 * 109.47643 * 301.17353 * 30 29 6 50 50 H 1.08998 * 109.48786 * 181.15121 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4419 0.0000 4 6 2.0418 -0.7247 1.2486 5 6 3.5716 -0.7866 1.1986 6 6 4.0042 -1.4818 -0.0949 7 1 3.6314 -2.5061 -0.0995 8 6 5.5317 -1.4943 -0.1812 9 6 5.9602 -2.2847 -1.3905 10 8 5.1260 -2.7882 -2.1127 11 7 7.2705 -2.4313 -1.6702 12 6 7.6870 -3.1993 -2.8462 13 1 6.8867 -3.4807 -3.5308 14 6 8.8433 -4.1858 -2.6708 15 1 9.2732 -4.3394 -1.6811 16 6 8.9805 -5.2984 -3.7798 17 7 9.8113 -4.6750 -4.8362 18 6 10.8122 -5.2546 -5.5692 19 1 11.2472 -6.1886 -5.2454 20 6 11.2679 -4.6416 -6.7283 21 7 10.6208 -3.6084 -7.2244 22 14 12.7996 -5.2830 -7.5839 23 1 12.4149 -6.3168 -8.5781 24 1 13.4863 -4.1625 -8.2753 25 1 13.7151 -5.8797 -6.5784 26 6 9.3133 -3.2821 -4.9197 27 6 9.0527 -2.8731 -3.4540 28 1 9.6386 -2.0487 -3.0476 29 8 3.4694 -0.7751 -1.2159 30 6 2.0415 -0.7256 -1.2472 31 1 -0.3634 0.5118 0.8911 32 1 -0.3633 0.5158 -0.8888 33 1 -0.3634 -1.0276 -0.0023 34 1 3.1313 1.4410 -0.0023 35 1 1.6766 1.9568 -0.8888 36 1 1.6803 1.9555 0.8911 37 1 1.6366 -1.7362 1.2751 38 1 1.7278 -0.1827 2.1408 39 1 3.9780 0.2245 1.2222 40 1 3.9415 -1.3491 2.0558 41 1 5.8991 -0.4716 -0.2667 42 1 5.9426 -1.9539 0.7176 43 1 7.9377 -2.0278 -1.0933 44 1 8.0039 -5.5741 -4.1776 45 1 9.4831 -6.1736 -3.3681 46 1 10.9390 -3.1803 -8.0346 47 1 8.3887 -3.2429 -5.4954 48 1 10.0666 -2.6336 -5.3671 49 1 1.6431 -1.7399 -1.2668 50 1 1.7157 -0.1899 -2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961242806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:18 Heat of formation + Delta-G solvation = -38.831312 kcal Electronic energy + Delta-G solvation = -27454.559618 eV Core-core repulsion = 23675.907178 eV Total energy + Delta-G solvation = -3778.652440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.42290 -39.46139 -38.11615 -35.54873 -34.36571 -33.41514 -32.54662 -30.50055 -29.59014 -27.61599 -26.98744 -26.30717 -25.60256 -24.52707 -22.27032 -21.43894 -20.43853 -19.98620 -19.25348 -19.15370 -16.94103 -16.75770 -16.63053 -16.33215 -15.78432 -15.29306 -14.84969 -14.75153 -14.56159 -14.44998 -13.80933 -13.66888 -13.23225 -13.12049 -12.89284 -12.71790 -12.52060 -12.30423 -12.25296 -12.16789 -12.15967 -11.83360 -11.45042 -11.40170 -11.27950 -11.12687 -10.95574 -10.81634 -10.75314 -10.42026 -10.31902 -10.16448 -10.13001 -9.72761 -9.65274 -9.44522 -9.15719 -8.71320 -8.24699 -6.84950 -5.78250 -3.12327 2.77492 3.19694 3.39533 3.44560 3.46680 3.62735 4.29494 4.37560 4.41695 4.42645 4.48520 4.53799 4.72495 4.89736 4.96507 5.06210 5.18146 5.22916 5.27243 5.28133 5.33674 5.40013 5.41498 5.43222 5.46638 5.53799 5.54569 5.59918 5.61750 5.63816 5.70784 5.77578 5.84462 5.88293 5.90231 5.98320 6.12396 6.20427 6.31723 6.55139 6.71674 6.88920 6.92162 7.16086 7.37981 7.55423 7.68291 7.73383 8.22024 8.42075 9.12337 9.75250 10.52746 11.36226 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.002037 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.148307 B =13745.586392 C =14039.387366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.153 4.153 6 C 0.107 3.893 7 H 0.065 0.935 8 C -0.135 4.135 9 C 0.515 3.485 10 O -0.527 6.527 11 N -0.702 5.702 12 C 0.096 3.904 13 H 0.130 0.870 14 C -0.187 4.187 15 H 0.105 0.895 16 C 0.158 3.842 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.186 3.814 27 C -0.181 4.181 28 H 0.100 0.900 29 O -0.361 6.361 30 C 0.075 3.925 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.397 0.603 44 H 0.030 0.970 45 H 0.049 0.951 46 H 0.255 0.745 47 H 0.026 0.974 48 H 0.090 0.910 49 H 0.049 0.951 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 9.371 20.513 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.191 4.191 6 C 0.049 3.951 7 H 0.083 0.917 8 C -0.175 4.175 9 C 0.302 3.698 10 O -0.402 6.402 11 N -0.352 5.352 12 C -0.010 4.010 13 H 0.148 0.852 14 C -0.208 4.208 15 H 0.123 0.877 16 C 0.031 3.969 17 N -0.316 5.316 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.060 3.940 27 C -0.202 4.202 28 H 0.118 0.882 29 O -0.280 6.280 30 C -0.002 4.002 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.230 0.770 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.969 9.106 19.596 27.475 hybrid contribution 1.038 -0.073 0.176 1.055 sum -15.931 9.033 19.773 26.951 Atomic orbital electron populations 1.21791 0.94042 1.01904 1.02012 1.21240 0.95933 0.96797 0.96428 1.21808 1.01891 0.94357 1.01315 1.21638 0.95124 1.00540 0.97417 1.22290 0.96555 1.02160 0.98048 1.21729 0.91881 0.95724 0.85788 0.91685 1.21734 0.95864 1.02246 0.97636 1.20430 0.82196 0.80591 0.86629 1.90720 1.51234 1.48091 1.50173 1.45428 1.07114 1.54329 1.28283 1.21852 0.92637 0.97116 0.89366 0.85216 1.25083 1.02166 0.94072 0.99519 0.87665 1.21687 0.94538 0.92721 0.87989 1.45124 1.38465 1.06996 1.41064 1.18974 1.08848 1.05807 1.01859 0.90557 1.24911 0.99828 0.98968 0.96639 1.69906 1.39580 1.24141 1.22433 0.86113 0.82494 0.77729 0.79361 1.21436 1.21562 1.20589 1.21048 0.98319 0.87201 0.87466 1.24616 0.96995 0.98467 1.00128 0.88190 1.87996 1.19569 1.75524 1.44869 1.22572 0.81386 0.99264 0.97006 0.92449 0.92374 0.92562 0.91768 0.92704 0.93033 0.91791 0.91509 0.90651 0.90874 0.88126 0.87701 0.76972 0.95229 0.93205 0.93529 0.95608 0.89196 0.93222 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.49 37.16 0.32 -0.57 16 2 C -0.10 -0.79 0.77 -154.38 -0.12 -0.91 16 3 C -0.14 -1.02 8.08 37.15 0.30 -0.72 16 4 C -0.11 -0.76 4.81 -26.55 -0.13 -0.89 16 5 C -0.15 -1.10 5.06 -26.59 -0.13 -1.24 16 6 C 0.11 1.09 2.19 -26.68 -0.06 1.03 16 7 H 0.07 0.75 7.95 -51.93 -0.41 0.33 16 8 C -0.13 -1.27 5.41 -27.89 -0.15 -1.42 16 9 C 0.52 7.29 7.71 -10.99 -0.08 7.20 16 10 O -0.53 -9.80 14.99 -8.81 -0.13 -9.93 16 11 N -0.70 -9.57 5.56 -53.81 -0.30 -9.87 16 12 C 0.10 1.68 5.92 -67.93 -0.40 1.27 16 13 H 0.13 2.61 7.40 -51.93 -0.38 2.23 16 14 C -0.19 -3.38 7.34 -87.38 -0.64 -4.03 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 16 C 0.16 3.41 7.09 -0.57 0.00 3.40 16 17 N -0.59 -15.47 3.38 -166.73 -0.56 -16.03 16 18 C -0.23 -6.38 10.35 -15.06 -0.16 -6.54 16 19 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 21 N -0.91 -27.08 10.88 55.49 0.60 -26.48 16 22 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.19 4.56 5.69 -2.41 -0.01 4.55 16 27 C -0.18 -3.48 6.98 -89.22 -0.62 -4.10 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 29 O -0.36 -4.52 9.07 -49.59 -0.45 -4.97 16 30 C 0.07 0.75 5.54 37.20 0.21 0.95 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.54 6.15 -51.93 -0.32 0.22 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.53 6.63 -51.93 -0.34 0.19 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.40 4.13 8.83 -40.82 -0.36 3.77 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 2.44 6.53 -51.93 -0.34 2.10 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -33.36 389.65 -10.68 -44.03 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.89 Total: 2.61 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.79 Total: -2.27 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.26 Total: -52.39 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.58 Total: -14.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.36 -10.68 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961242806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.200 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds