Wall clock time and date at job start Tue Mar 31 2020 13:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.52678 * 2 1 4 4 C 1.53172 * 109.52033 * 120.13065 * 2 1 3 5 5 C 1.53186 * 109.03752 * 176.88539 * 4 2 1 6 6 C 1.53090 * 109.15806 * 303.01526 * 5 4 2 7 7 H 1.08999 * 109.48531 * 297.62538 * 6 5 4 8 8 C 1.53002 * 109.47997 * 177.59134 * 6 5 4 9 9 C 1.50693 * 109.47542 * 175.00155 * 8 6 5 10 10 O 1.21287 * 120.00011 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00322 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00293 * 180.02562 * 11 9 8 13 13 H 1.09007 * 115.51165 * 9.58147 * 12 11 9 14 14 C 1.52999 * 117.44123 * 224.24143 * 12 11 9 15 15 H 1.08997 * 119.54283 * 4.11732 * 14 12 11 16 16 C 1.57691 * 116.10904 * 161.63750 * 14 12 11 17 17 N 1.48145 * 104.67965 * 87.30670 * 16 14 12 18 18 C 1.36935 * 127.84145 * 139.77184 * 17 16 14 19 19 H 1.07997 * 119.99916 * 344.35873 * 18 17 16 20 20 C 1.38812 * 119.99813 * 164.35876 * 18 17 16 21 21 N 1.31621 * 120.00158 * 350.57506 * 20 18 17 22 22 Si 1.86802 * 119.99850 * 170.57200 * 20 18 17 23 23 H 1.48497 * 109.47004 * 89.99818 * 22 20 18 24 24 H 1.48500 * 109.47198 * 209.99792 * 22 20 18 25 25 H 1.48497 * 109.47102 * 329.99900 * 22 20 18 26 26 C 1.48153 * 104.31738 * 319.77427 * 17 16 14 27 27 C 1.52997 * 117.44669 * 154.99924 * 12 11 9 28 28 H 1.09006 * 119.53397 * 355.88064 * 27 12 11 29 29 O 1.42898 * 109.41634 * 57.61141 * 6 5 4 30 30 C 1.42907 * 114.09643 * 298.83909 * 29 6 5 31 31 H 1.08998 * 109.47302 * 299.87295 * 1 2 3 32 32 H 1.09000 * 109.47182 * 59.87282 * 1 2 3 33 33 H 1.08996 * 109.47524 * 179.87370 * 1 2 3 34 34 H 1.09001 * 109.47650 * 180.12702 * 3 2 1 35 35 H 1.08996 * 109.47313 * 300.12859 * 3 2 1 36 36 H 1.09000 * 109.47330 * 60.12358 * 3 2 1 37 37 H 1.08995 * 109.55054 * 57.01491 * 4 2 1 38 38 H 1.09006 * 109.61698 * 296.79144 * 4 2 1 39 39 H 1.08999 * 109.52108 * 62.92009 * 5 4 2 40 40 H 1.09002 * 109.51857 * 183.11214 * 5 4 2 41 41 H 1.09002 * 109.46831 * 295.00449 * 8 6 5 42 42 H 1.08998 * 109.46957 * 54.99616 * 8 6 5 43 43 H 0.97002 * 120.00063 * 359.97438 * 11 9 8 44 44 H 1.09000 * 110.92386 * 328.22408 * 16 14 12 45 45 H 1.09001 * 109.93613 * 205.88846 * 16 14 12 46 46 H 0.97002 * 119.99822 * 180.02562 * 21 20 18 47 47 H 1.08998 * 110.40963 * 280.79647 * 26 17 16 48 48 H 1.09001 * 110.50037 * 158.42128 * 26 17 16 49 49 H 1.08997 * 109.47643 * 301.17353 * 30 29 6 50 50 H 1.08998 * 109.48786 * 181.15121 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4419 0.0000 4 6 2.0418 -0.7247 1.2486 5 6 3.5716 -0.7866 1.1986 6 6 4.0042 -1.4818 -0.0949 7 1 3.6314 -2.5061 -0.0995 8 6 5.5317 -1.4943 -0.1812 9 6 5.9602 -2.2847 -1.3905 10 8 5.1260 -2.7882 -2.1127 11 7 7.2705 -2.4313 -1.6702 12 6 7.6870 -3.1993 -2.8462 13 1 6.8867 -3.4807 -3.5308 14 6 8.8433 -4.1858 -2.6708 15 1 9.2732 -4.3394 -1.6811 16 6 8.9805 -5.2984 -3.7798 17 7 9.8113 -4.6750 -4.8362 18 6 10.8122 -5.2546 -5.5692 19 1 11.2472 -6.1886 -5.2454 20 6 11.2679 -4.6416 -6.7283 21 7 10.6208 -3.6084 -7.2244 22 14 12.7996 -5.2830 -7.5839 23 1 12.4149 -6.3168 -8.5781 24 1 13.4863 -4.1625 -8.2753 25 1 13.7151 -5.8797 -6.5784 26 6 9.3133 -3.2821 -4.9197 27 6 9.0527 -2.8731 -3.4540 28 1 9.6386 -2.0487 -3.0476 29 8 3.4694 -0.7751 -1.2159 30 6 2.0415 -0.7256 -1.2472 31 1 -0.3634 0.5118 0.8911 32 1 -0.3633 0.5158 -0.8888 33 1 -0.3634 -1.0276 -0.0023 34 1 3.1313 1.4410 -0.0023 35 1 1.6766 1.9568 -0.8888 36 1 1.6803 1.9555 0.8911 37 1 1.6366 -1.7362 1.2751 38 1 1.7278 -0.1827 2.1408 39 1 3.9780 0.2245 1.2222 40 1 3.9415 -1.3491 2.0558 41 1 5.8991 -0.4716 -0.2667 42 1 5.9426 -1.9539 0.7176 43 1 7.9377 -2.0278 -1.0933 44 1 8.0039 -5.5741 -4.1776 45 1 9.4831 -6.1736 -3.3681 46 1 10.9390 -3.1803 -8.0346 47 1 8.3887 -3.2429 -5.4954 48 1 10.0666 -2.6336 -5.3671 49 1 1.6431 -1.7399 -1.2668 50 1 1.7157 -0.1899 -2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961242806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:17 Heat of formation + Delta-G solvation = -59.612656 kcal Electronic energy + Delta-G solvation = -27455.460765 eV Core-core repulsion = 23675.907178 eV Total energy + Delta-G solvation = -3779.553587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.32424 -40.64539 -39.55718 -36.31426 -35.98321 -34.39815 -34.00391 -32.19539 -30.48099 -28.81009 -28.16404 -27.65608 -26.89891 -25.38203 -23.53831 -22.56281 -21.94302 -21.26709 -20.88871 -19.80215 -18.86317 -17.91318 -17.64620 -17.43490 -16.78325 -16.52930 -15.94427 -15.88743 -15.70602 -15.37126 -15.15124 -14.94951 -14.65214 -14.51094 -14.03536 -13.74983 -13.51119 -13.34150 -13.30214 -13.03052 -12.91326 -12.88095 -12.80166 -12.75247 -12.70952 -12.42802 -12.10608 -12.00624 -11.92605 -11.87130 -11.74721 -11.66924 -11.34423 -11.09870 -10.93923 -10.80601 -10.67739 -10.18877 -9.65282 -8.94331 -7.93031 -5.30277 1.46276 1.48241 1.58016 1.65704 2.03900 2.48084 2.86178 2.91113 3.27551 3.57750 3.68600 3.72533 3.80749 3.83833 3.85610 3.97680 4.04716 4.08609 4.17855 4.26984 4.32814 4.42677 4.51570 4.57149 4.64761 4.68061 4.73129 4.80919 4.82871 4.84870 4.90885 4.93693 4.96541 4.98873 5.04764 5.09064 5.15397 5.25924 5.27293 5.32518 5.40801 5.41484 5.44889 5.56166 5.58091 5.62945 6.14664 6.39435 6.62092 6.98331 7.34541 7.65535 8.44468 9.21131 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.002037 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.148307 B =13745.586392 C =14039.387366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.100 3.900 7 H 0.044 0.956 8 C -0.124 4.124 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.687 5.687 12 C 0.114 3.886 13 H 0.097 0.903 14 C -0.163 4.163 15 H 0.143 0.857 16 C 0.148 3.852 17 N -0.617 5.617 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.265 1.265 26 C 0.189 3.811 27 C -0.182 4.182 28 H 0.126 0.874 29 O -0.391 6.391 30 C 0.070 3.930 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.418 0.582 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.250 0.750 47 H -0.009 1.009 48 H 0.058 0.942 49 H 0.038 0.962 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 9.961 24.096 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.148 4.148 5 C -0.182 4.182 6 C 0.042 3.958 7 H 0.062 0.938 8 C -0.163 4.163 9 C 0.299 3.701 10 O -0.458 6.458 11 N -0.338 5.338 12 C 0.007 3.993 13 H 0.115 0.885 14 C -0.184 4.184 15 H 0.161 0.839 16 C 0.022 3.978 17 N -0.341 5.341 18 C -0.370 4.370 19 H 0.102 0.898 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.812 3.188 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.190 1.190 26 C 0.063 3.937 27 C -0.203 4.203 28 H 0.144 0.856 29 O -0.310 6.310 30 C -0.007 4.007 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.256 0.744 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.009 0.991 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.363 9.700 23.245 30.036 hybrid contribution 0.745 -0.304 -0.987 1.273 sum -15.618 9.396 22.258 28.769 Atomic orbital electron populations 1.21779 0.93119 1.02044 1.02599 1.21196 0.96636 0.96665 0.95492 1.21778 1.01301 0.94189 1.01786 1.21668 0.95125 1.00489 0.97511 1.22239 0.96634 1.02447 0.96847 1.21894 0.92325 0.94897 0.86683 0.93816 1.21840 0.95381 1.02633 0.96478 1.21386 0.81482 0.79891 0.87352 1.90713 1.52581 1.50262 1.52200 1.45251 1.07832 1.53686 1.27049 1.21345 0.90905 0.96937 0.90150 0.88507 1.24998 1.02155 0.91622 0.99634 0.83918 1.21829 0.93422 0.94436 0.88112 1.45432 1.38762 1.07983 1.41898 1.19401 1.09241 1.06103 1.02238 0.89831 1.25821 1.03002 0.99482 0.97586 1.70116 1.41235 1.25596 1.22747 0.85008 0.78753 0.76878 0.78204 1.21228 1.21849 1.18999 1.20775 0.95613 0.86681 0.90603 1.24298 0.99113 1.00154 0.96712 0.85608 1.87946 1.20671 1.75882 1.46520 1.22651 0.80717 0.98974 0.98377 0.91168 0.92471 0.92677 0.92604 0.93247 0.91547 0.92155 0.89773 0.89903 0.88665 0.86089 0.83629 0.74422 0.96440 0.91844 0.94072 0.99061 0.92333 0.94379 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.49 71.98 0.61 -0.96 16 2 C -0.10 -1.40 0.77 -52.10 -0.04 -1.44 16 3 C -0.13 -1.77 8.08 71.98 0.58 -1.19 16 4 C -0.11 -1.29 4.81 30.71 0.15 -1.14 16 5 C -0.14 -1.65 5.06 30.69 0.16 -1.50 16 6 C 0.10 1.89 2.19 30.63 0.07 1.95 16 7 H 0.04 0.99 7.95 -2.39 -0.02 0.97 16 8 C -0.12 -1.95 5.41 29.85 0.16 -1.79 16 9 C 0.51 13.68 7.71 87.65 0.68 14.35 16 10 O -0.58 -21.91 14.99 10.68 0.16 -21.75 16 11 N -0.69 -17.08 5.56 -442.53 -2.46 -19.54 16 12 C 0.11 3.90 5.92 44.99 0.27 4.16 16 13 H 0.10 4.05 7.40 -2.38 -0.02 4.03 16 14 C -0.16 -5.59 7.34 -8.70 -0.06 -5.66 16 15 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 16 C 0.15 6.39 7.09 87.72 0.62 7.02 16 17 N -0.62 -32.88 3.38 -681.43 -2.30 -35.18 16 18 C -0.24 -13.77 10.35 84.03 0.87 -12.90 16 19 H 0.08 4.52 7.85 -2.91 -0.02 4.49 16 20 C -0.07 -3.78 5.40 84.86 0.46 -3.32 16 21 N -0.95 -58.38 10.88 21.65 0.24 -58.14 16 22 Si 0.98 45.94 29.56 68.60 2.03 47.97 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.19 9.69 5.69 86.53 0.49 10.19 16 27 C -0.18 -6.88 6.98 -9.89 -0.07 -6.95 16 28 H 0.13 4.14 8.14 -2.38 -0.02 4.12 16 29 O -0.39 -9.78 9.07 -135.25 -1.23 -11.00 16 30 C 0.07 1.43 5.54 72.01 0.40 1.83 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.84 6.15 -2.39 -0.01 0.82 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.87 6.63 -2.39 -0.02 0.85 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.42 6.99 8.83 -92.71 -0.82 6.17 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.06 3.33 6.53 -2.39 -0.02 3.32 16 49 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.12 389.65 1.86 -75.25 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.10 Total: 19.73 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.33 Total: 2.65 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -4.53 Total: -112.87 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.07 Total: -32.75 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.12 1.86 -75.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961242806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.642 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds