Wall clock time and date at job start Tue Mar 31 2020 13:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.29438 * 117.95927 * 2 1 4 4 C 1.50702 * 117.96673 * 0.44869 * 3 2 1 5 5 C 1.50073 * 124.07375 * 180.47095 * 3 2 1 6 6 C 1.53017 * 110.14695 * 342.86755 * 5 3 2 7 7 H 1.09005 * 109.64724 * 289.54475 * 6 5 3 8 8 C 1.50699 * 109.64344 * 169.12249 * 6 5 3 9 9 O 1.21280 * 119.99920 * 240.00065 * 8 6 5 10 10 N 1.34773 * 120.00090 * 59.99916 * 8 6 5 11 11 C 1.46501 * 120.00052 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47035 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.51607 * 59.89988 * 12 11 10 14 14 C 1.53297 * 109.51215 * 180.02562 * 12 11 10 15 15 N 1.47157 * 108.38165 * 172.22595 * 14 12 11 16 16 C 1.36937 * 120.98019 * 129.44632 * 15 14 12 17 17 H 1.07996 * 120.00281 * 210.34104 * 16 15 14 18 18 C 1.38818 * 119.99880 * 30.33817 * 16 15 14 19 19 N 1.31617 * 120.00023 * 9.80095 * 18 16 15 20 20 Si 1.86801 * 119.99894 * 189.79418 * 18 16 15 21 21 H 1.48499 * 109.46915 * 90.00061 * 20 18 16 22 22 H 1.48499 * 109.47155 * 210.00043 * 20 18 16 23 23 H 1.48504 * 109.47036 * 330.00161 * 20 18 16 24 24 C 1.47145 * 118.03816 * 309.46347 * 15 14 12 25 25 C 1.53295 * 108.38329 * 50.53729 * 24 15 14 26 26 O 1.42961 * 109.22498 * 307.69574 * 25 24 15 27 27 C 1.53396 * 108.43664 * 49.43699 * 6 5 3 28 28 C 1.50066 * 117.96358 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46851 * 354.83675 * 1 2 3 30 30 H 1.08996 * 109.47144 * 114.83745 * 1 2 3 31 31 H 1.09002 * 109.46548 * 234.83524 * 1 2 3 32 32 H 1.08997 * 109.47299 * 184.57908 * 4 3 2 33 33 H 1.09000 * 109.46892 * 304.57756 * 4 3 2 34 34 H 1.08999 * 109.46930 * 64.57251 * 4 3 2 35 35 H 1.09002 * 109.35190 * 222.66127 * 5 3 2 36 36 H 1.08999 * 109.35924 * 103.07946 * 5 3 2 37 37 H 0.97000 * 120.00010 * 0.02562 * 10 8 6 38 38 H 1.08997 * 109.47103 * 60.00354 * 11 10 8 39 39 H 1.08997 * 109.47504 * 300.00219 * 11 10 8 40 40 H 1.09002 * 109.68203 * 52.50643 * 14 12 11 41 41 H 1.08997 * 109.68202 * 291.94631 * 14 12 11 42 42 H 0.97001 * 119.99667 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.68536 * 170.26260 * 24 15 14 44 44 H 1.09009 * 109.68144 * 290.81436 * 24 15 14 45 45 H 1.09000 * 109.51511 * 67.62579 * 25 24 15 46 46 H 1.09005 * 109.51336 * 187.77316 * 25 24 15 47 47 H 1.08994 * 109.64223 * 52.24950 * 27 6 5 48 48 H 1.09002 * 109.64098 * 172.87780 * 27 6 5 49 49 H 1.08998 * 109.35969 * 283.07953 * 28 2 1 50 50 H 1.09006 * 109.35734 * 42.79767 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2697 2.3916 0.0104 5 6 3.6061 1.3032 -0.0102 6 6 4.2794 -0.0073 0.4030 7 1 4.1087 -0.1882 1.4643 8 6 5.7600 0.0775 0.1353 9 8 6.2847 -0.7083 -0.6250 10 7 6.5010 1.0264 0.7409 11 6 7.9405 1.1085 0.4811 12 6 8.5392 2.2628 1.2872 13 1 8.3700 2.0909 2.3502 14 6 10.0454 2.3499 1.0156 15 7 10.5613 3.5736 1.6496 16 6 11.6580 3.5346 2.4687 17 1 11.7515 4.2413 3.2799 18 6 12.6495 2.5865 2.2563 19 7 12.6365 1.8543 1.1626 20 14 14.0022 2.3500 3.5226 21 1 13.5808 1.3254 4.5115 22 1 15.2437 1.9007 2.8428 23 1 14.2575 3.6358 4.2203 24 6 9.8637 4.8404 1.3777 25 6 8.3664 4.6319 1.6317 26 8 7.9187 3.4902 0.8969 27 6 3.6704 -1.1472 -0.4232 28 6 2.2108 -1.3255 0.0006 29 1 -0.3633 1.0235 0.0925 30 1 -0.3633 -0.4316 -0.9326 31 1 -0.3632 -0.5919 0.8402 32 1 1.9140 3.2667 -0.0729 33 1 0.5772 2.3688 -0.8310 34 1 0.7071 2.4419 0.9426 35 1 3.8898 2.0909 0.6877 36 1 3.9333 1.5769 -1.0133 37 1 6.0815 1.6547 1.3493 38 1 8.1086 1.2816 -0.5819 39 1 8.4170 0.1738 0.7767 40 1 10.2229 2.3905 -0.0591 41 1 10.5457 1.4786 1.4382 42 1 13.3292 1.1916 1.0145 43 1 10.2436 5.6182 2.0400 44 1 10.0229 5.1316 0.3394 45 1 8.1968 4.4692 2.6961 46 1 7.8154 5.5139 1.3052 47 1 3.7167 -0.8968 -1.4830 48 1 4.2211 -2.0693 -0.2372 49 1 2.1746 -1.7533 1.0025 50 1 1.7137 -1.9987 -0.6978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035385815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:43 Heat of formation + Delta-G solvation = -65.098418 kcal Electronic energy + Delta-G solvation = -27872.122968 eV Core-core repulsion = 24092.331501 eV Total energy + Delta-G solvation = -3779.791467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.29841 -38.78628 -38.16182 -34.81183 -34.29945 -33.75811 -32.09511 -31.32837 -30.77508 -27.95301 -27.21751 -26.70378 -25.33034 -23.37812 -23.24755 -22.29778 -21.41767 -20.14798 -19.44511 -17.42740 -17.09095 -16.79210 -15.99684 -15.80665 -15.17792 -15.12739 -15.00250 -14.68101 -14.41005 -14.22422 -13.97293 -13.92977 -13.72611 -13.24308 -13.16195 -12.83213 -12.79249 -12.73884 -12.33111 -12.23733 -12.12942 -11.88590 -11.82456 -11.53115 -11.09328 -11.06803 -10.91502 -10.87048 -10.73579 -10.46808 -10.41492 -10.26310 -10.10159 -9.69460 -9.56416 -9.05645 -8.81299 -8.71837 -8.59071 -6.72366 -5.86241 -3.36321 1.96528 2.79152 3.31627 3.35925 3.39341 3.40608 4.24390 4.39517 4.40940 4.42073 4.71472 4.83996 4.99712 5.02755 5.12850 5.20344 5.21712 5.26673 5.33636 5.34262 5.37006 5.47456 5.53798 5.55784 5.63052 5.67263 5.74100 5.75389 5.78014 5.81283 5.85753 5.92177 6.02190 6.03427 6.11837 6.16605 6.25442 6.37781 6.45178 6.50158 6.69798 6.77403 6.85315 7.06909 7.49406 7.68320 7.70787 7.83324 8.33973 8.40478 9.09688 9.70469 10.29394 11.21344 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.002527 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.824314 B =11078.866883 C =11884.321787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.071 4.071 6 C -0.106 4.106 7 H 0.097 0.903 8 C 0.513 3.487 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.132 3.868 12 C 0.055 3.945 13 H 0.055 0.945 14 C 0.154 3.846 15 N -0.595 5.595 16 C -0.258 4.258 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.904 5.904 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 C -0.098 4.098 28 C -0.081 4.081 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.096 0.904 42 H 0.257 0.743 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 -1.583 -0.303 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.132 4.132 3 C -0.125 4.125 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.127 4.127 7 H 0.115 0.885 8 C 0.299 3.701 9 O -0.421 6.421 10 N -0.370 5.370 11 C 0.008 3.992 12 C -0.005 4.005 13 H 0.073 0.927 14 C 0.027 3.973 15 N -0.318 5.318 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.017 4.017 25 C -0.028 4.028 26 O -0.309 6.309 27 C -0.136 4.136 28 C -0.118 4.118 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.966 -2.239 -1.046 23.099 hybrid contribution 0.845 0.237 1.127 1.428 sum -22.121 -2.002 0.082 22.212 Atomic orbital electron populations 1.21082 0.92789 1.02846 1.01772 1.20692 0.95575 0.94513 1.02446 1.20617 0.94862 0.94702 1.02342 1.20942 0.99192 0.95731 1.01699 1.20350 0.91749 0.96058 1.02630 1.21389 0.91438 0.97636 1.02245 0.88518 1.20563 0.88758 0.80540 0.80237 1.90696 1.73705 1.41462 1.36283 1.46013 1.09540 1.33728 1.47675 1.21414 0.79156 0.97696 1.00932 1.23168 0.97044 0.83295 0.96972 0.92745 1.21319 0.86853 0.92199 0.96927 1.43998 1.31625 1.00661 1.55561 1.19176 0.96156 1.16987 1.06372 0.91514 1.25207 0.97316 1.00262 0.96610 1.69954 1.34929 1.25303 1.24559 0.86211 0.81376 0.78072 0.80601 1.21305 1.21533 1.20366 1.21610 0.91069 0.90448 0.98615 1.23001 0.96833 0.87910 0.95044 1.87772 1.65056 1.15756 1.62365 1.21412 0.94296 0.97946 0.99924 1.20387 0.94886 0.94750 1.01760 0.91264 0.91902 0.92010 0.92080 0.91715 0.91624 0.90371 0.90291 0.76465 0.90824 0.90091 0.95072 0.88567 0.93330 0.92010 0.95562 0.93942 0.90068 0.91125 0.90595 0.90965 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.63 36.01 0.35 -0.52 16 2 C -0.13 -1.13 5.84 -100.94 -0.59 -1.72 16 3 C -0.13 -1.11 5.84 -100.94 -0.59 -1.70 16 4 C -0.12 -0.87 8.35 36.01 0.30 -0.57 16 5 C -0.07 -0.69 4.84 -28.18 -0.14 -0.82 16 6 C -0.11 -1.14 2.58 -91.56 -0.24 -1.38 16 7 H 0.10 0.92 8.13 -51.93 -0.42 0.50 16 8 C 0.51 7.46 7.14 -10.99 -0.08 7.38 16 9 O -0.54 -10.03 15.90 5.56 0.09 -9.94 16 10 N -0.72 -10.23 5.36 -60.30 -0.32 -10.56 16 11 C 0.13 2.26 5.37 -4.04 -0.02 2.23 16 12 C 0.05 1.03 2.86 -26.58 -0.08 0.95 16 13 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.15 3.62 4.67 -3.53 -0.02 3.60 16 15 N -0.59 -14.78 3.04 -171.83 -0.52 -15.30 16 16 C -0.26 -6.94 9.64 -15.06 -0.15 -7.09 16 17 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 18 C 0.01 0.14 5.09 -17.43 -0.09 0.05 16 19 N -0.90 -25.88 11.01 55.49 0.61 -25.27 16 20 Si 0.91 21.35 29.56 -169.99 -5.03 16.33 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.11 2.25 6.73 -3.54 -0.02 2.23 16 25 C 0.05 0.86 6.98 37.31 0.26 1.12 16 26 O -0.39 -7.14 10.14 -35.23 -0.36 -7.50 16 27 C -0.10 -1.04 4.70 -26.51 -0.12 -1.16 16 28 C -0.08 -0.68 5.82 -28.17 -0.16 -0.85 16 29 H 0.07 0.42 5.21 -51.93 -0.27 0.15 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 33 H 0.06 0.43 7.33 -51.93 -0.38 0.05 16 34 H 0.07 0.43 7.69 -51.93 -0.40 0.03 16 35 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 36 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.40 4.92 8.03 -40.82 -0.33 4.59 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 2.50 6.23 -51.93 -0.32 2.18 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 44 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 48 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -31.22 388.64 -9.86 -41.09 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.81 Total: 3.53 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.38 Total: 1.76 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.23 Total: -51.13 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.27 Total: -17.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.22 -9.86 -41.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035385815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.013 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds