Wall clock time and date at job start Tue Mar 31 2020 13:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.29438 * 117.95927 * 2 1 4 4 C 1.50702 * 117.96673 * 0.44869 * 3 2 1 5 5 C 1.50073 * 124.07375 * 180.47095 * 3 2 1 6 6 C 1.53017 * 110.14695 * 342.86755 * 5 3 2 7 7 H 1.09005 * 109.64724 * 289.54475 * 6 5 3 8 8 C 1.50699 * 109.64344 * 169.12249 * 6 5 3 9 9 O 1.21280 * 119.99920 * 240.00065 * 8 6 5 10 10 N 1.34773 * 120.00090 * 59.99916 * 8 6 5 11 11 C 1.46501 * 120.00052 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47035 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.51607 * 59.89988 * 12 11 10 14 14 C 1.53297 * 109.51215 * 180.02562 * 12 11 10 15 15 N 1.47157 * 108.38165 * 172.22595 * 14 12 11 16 16 C 1.36937 * 120.98019 * 129.44632 * 15 14 12 17 17 H 1.07996 * 120.00281 * 210.34104 * 16 15 14 18 18 C 1.38818 * 119.99880 * 30.33817 * 16 15 14 19 19 N 1.31617 * 120.00023 * 9.80095 * 18 16 15 20 20 Si 1.86801 * 119.99894 * 189.79418 * 18 16 15 21 21 H 1.48499 * 109.46915 * 90.00061 * 20 18 16 22 22 H 1.48499 * 109.47155 * 210.00043 * 20 18 16 23 23 H 1.48504 * 109.47036 * 330.00161 * 20 18 16 24 24 C 1.47145 * 118.03816 * 309.46347 * 15 14 12 25 25 C 1.53295 * 108.38329 * 50.53729 * 24 15 14 26 26 O 1.42961 * 109.22498 * 307.69574 * 25 24 15 27 27 C 1.53396 * 108.43664 * 49.43699 * 6 5 3 28 28 C 1.50066 * 117.96358 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46851 * 354.83675 * 1 2 3 30 30 H 1.08996 * 109.47144 * 114.83745 * 1 2 3 31 31 H 1.09002 * 109.46548 * 234.83524 * 1 2 3 32 32 H 1.08997 * 109.47299 * 184.57908 * 4 3 2 33 33 H 1.09000 * 109.46892 * 304.57756 * 4 3 2 34 34 H 1.08999 * 109.46930 * 64.57251 * 4 3 2 35 35 H 1.09002 * 109.35190 * 222.66127 * 5 3 2 36 36 H 1.08999 * 109.35924 * 103.07946 * 5 3 2 37 37 H 0.97000 * 120.00010 * 0.02562 * 10 8 6 38 38 H 1.08997 * 109.47103 * 60.00354 * 11 10 8 39 39 H 1.08997 * 109.47504 * 300.00219 * 11 10 8 40 40 H 1.09002 * 109.68203 * 52.50643 * 14 12 11 41 41 H 1.08997 * 109.68202 * 291.94631 * 14 12 11 42 42 H 0.97001 * 119.99667 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.68536 * 170.26260 * 24 15 14 44 44 H 1.09009 * 109.68144 * 290.81436 * 24 15 14 45 45 H 1.09000 * 109.51511 * 67.62579 * 25 24 15 46 46 H 1.09005 * 109.51336 * 187.77316 * 25 24 15 47 47 H 1.08994 * 109.64223 * 52.24950 * 27 6 5 48 48 H 1.09002 * 109.64098 * 172.87780 * 27 6 5 49 49 H 1.08998 * 109.35969 * 283.07953 * 28 2 1 50 50 H 1.09006 * 109.35734 * 42.79767 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2697 2.3916 0.0104 5 6 3.6061 1.3032 -0.0102 6 6 4.2794 -0.0073 0.4030 7 1 4.1087 -0.1882 1.4643 8 6 5.7600 0.0775 0.1353 9 8 6.2847 -0.7083 -0.6250 10 7 6.5010 1.0264 0.7409 11 6 7.9405 1.1085 0.4811 12 6 8.5392 2.2628 1.2872 13 1 8.3700 2.0909 2.3502 14 6 10.0454 2.3499 1.0156 15 7 10.5613 3.5736 1.6496 16 6 11.6580 3.5346 2.4687 17 1 11.7515 4.2413 3.2799 18 6 12.6495 2.5865 2.2563 19 7 12.6365 1.8543 1.1626 20 14 14.0022 2.3500 3.5226 21 1 13.5808 1.3254 4.5115 22 1 15.2437 1.9007 2.8428 23 1 14.2575 3.6358 4.2203 24 6 9.8637 4.8404 1.3777 25 6 8.3664 4.6319 1.6317 26 8 7.9187 3.4902 0.8969 27 6 3.6704 -1.1472 -0.4232 28 6 2.2108 -1.3255 0.0006 29 1 -0.3633 1.0235 0.0925 30 1 -0.3633 -0.4316 -0.9326 31 1 -0.3632 -0.5919 0.8402 32 1 1.9140 3.2667 -0.0729 33 1 0.5772 2.3688 -0.8310 34 1 0.7071 2.4419 0.9426 35 1 3.8898 2.0909 0.6877 36 1 3.9333 1.5769 -1.0133 37 1 6.0815 1.6547 1.3493 38 1 8.1086 1.2816 -0.5819 39 1 8.4170 0.1738 0.7767 40 1 10.2229 2.3905 -0.0591 41 1 10.5457 1.4786 1.4382 42 1 13.3292 1.1916 1.0145 43 1 10.2436 5.6182 2.0400 44 1 10.0229 5.1316 0.3394 45 1 8.1968 4.4692 2.6961 46 1 7.8154 5.5139 1.3052 47 1 3.7167 -0.8968 -1.4830 48 1 4.2211 -2.0693 -0.2372 49 1 2.1746 -1.7533 1.0025 50 1 1.7137 -1.9987 -0.6978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035385815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:42 Heat of formation + Delta-G solvation = -84.160287 kcal Electronic energy + Delta-G solvation = -27872.949553 eV Core-core repulsion = 24092.331501 eV Total energy + Delta-G solvation = -3780.618052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36390 -40.17427 -39.26007 -36.47192 -35.84738 -34.56427 -33.27264 -32.92381 -32.15994 -29.21485 -28.43905 -27.51445 -26.81222 -25.06980 -24.07680 -23.53837 -22.67399 -21.61150 -20.82536 -18.93692 -18.35326 -17.84836 -17.47486 -17.13819 -16.90943 -16.10742 -16.05494 -15.82464 -15.57497 -15.50188 -15.28040 -15.04747 -14.80059 -14.72150 -14.58747 -14.38313 -13.89140 -13.60986 -13.26999 -13.19804 -13.01931 -12.94262 -12.78858 -12.71881 -12.68370 -12.53438 -12.37312 -12.18415 -12.09397 -11.93026 -11.91047 -11.65921 -11.33608 -11.21827 -10.83989 -10.66141 -10.59041 -10.12790 -9.34717 -8.71426 -7.91891 -5.46030 1.32925 1.45891 1.46193 1.55826 1.61291 2.13854 2.46318 2.78444 3.24075 3.48793 3.54873 3.68528 3.86118 4.02454 4.06271 4.14231 4.18368 4.27287 4.33727 4.42456 4.45930 4.51308 4.55050 4.56717 4.60074 4.67601 4.69302 4.81759 4.86263 4.88531 4.96458 4.96922 4.98418 5.06623 5.07133 5.08515 5.21217 5.22560 5.26134 5.27847 5.32820 5.40306 5.53908 5.58220 5.82675 6.21898 6.26688 6.33402 6.54958 7.05254 7.23375 7.72267 8.27579 9.13295 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.002527 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.824314 B =11078.866883 C =11884.321787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.136 4.136 3 C -0.137 4.137 4 C -0.117 4.117 5 C -0.067 4.067 6 C -0.096 4.096 7 H 0.118 0.882 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.707 5.707 11 C 0.143 3.857 12 C 0.077 3.923 13 H 0.064 0.936 14 C 0.160 3.840 15 N -0.615 5.615 16 C -0.266 4.266 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.101 3.899 25 C 0.057 3.943 26 O -0.389 6.389 27 C -0.097 4.097 28 C -0.077 4.077 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.415 0.585 38 H 0.055 0.945 39 H 0.073 0.927 40 H -0.002 1.002 41 H 0.066 0.934 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.014 0.986 45 H 0.055 0.945 46 H 0.122 0.878 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.917 -0.514 1.467 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.136 4.136 3 C -0.137 4.137 4 C -0.173 4.173 5 C -0.104 4.104 6 C -0.117 4.117 7 H 0.136 0.864 8 C 0.300 3.700 9 O -0.468 6.468 10 N -0.359 5.359 11 C 0.018 3.982 12 C 0.018 3.982 13 H 0.082 0.918 14 C 0.034 3.966 15 N -0.340 5.340 16 C -0.396 4.396 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.801 3.199 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.190 1.190 24 C -0.024 4.024 25 C -0.020 4.020 26 O -0.308 6.308 27 C -0.135 4.135 28 C -0.114 4.114 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.251 0.749 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.548 -1.121 0.750 25.583 hybrid contribution 1.647 -0.045 0.524 1.729 sum -23.901 -1.167 1.274 23.963 Atomic orbital electron populations 1.21101 0.91338 1.03607 1.02337 1.20888 0.96706 0.94190 1.01811 1.20691 0.94262 0.95663 1.03119 1.20941 0.99097 0.94810 1.02467 1.20321 0.92606 0.95469 1.02035 1.21391 0.88276 0.98561 1.03452 0.86423 1.21275 0.90217 0.79440 0.79074 1.90680 1.74823 1.43086 1.38182 1.45847 1.08137 1.34092 1.47816 1.21074 0.81022 0.96692 0.99455 1.22749 0.93674 0.84244 0.97557 0.91767 1.21080 0.89948 0.91079 0.94517 1.44302 1.31848 1.02389 1.55416 1.19548 0.96671 1.16694 1.06679 0.90872 1.26007 0.99741 1.00392 0.98444 1.70138 1.35638 1.26049 1.26517 0.85177 0.78166 0.78329 0.78216 1.20899 1.22269 1.19004 1.21839 0.93377 0.89017 0.98153 1.23086 0.94378 0.88699 0.95876 1.87790 1.64429 1.15762 1.62822 1.21384 0.95915 0.97266 0.98983 1.20379 0.93102 0.95318 1.02595 0.90510 0.91498 0.91183 0.92128 0.91187 0.90581 0.89156 0.91854 0.74868 0.92689 0.90927 0.98403 0.91549 0.93937 0.90909 0.96784 0.92715 0.86047 0.92818 0.91813 0.89791 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.63 71.24 0.69 -0.68 16 2 C -0.14 -2.00 5.84 -15.09 -0.09 -2.09 16 3 C -0.14 -2.13 5.84 -15.09 -0.09 -2.22 16 4 C -0.12 -1.40 8.35 71.24 0.59 -0.80 16 5 C -0.07 -1.20 4.84 29.66 0.14 -1.05 16 6 C -0.10 -1.95 2.58 -11.40 -0.03 -1.98 16 7 H 0.12 1.96 8.13 -2.38 -0.02 1.94 16 8 C 0.51 14.78 7.14 87.66 0.63 15.41 16 9 O -0.59 -22.27 15.90 -3.03 -0.05 -22.32 16 10 N -0.71 -19.62 5.36 -463.07 -2.48 -22.10 16 11 C 0.14 4.97 5.37 86.38 0.46 5.43 16 12 C 0.08 2.89 2.86 30.69 0.09 2.98 16 13 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 14 C 0.16 7.81 4.67 86.35 0.40 8.22 16 15 N -0.61 -30.79 3.04 -697.54 -2.12 -32.91 16 16 C -0.27 -14.39 9.64 84.03 0.81 -13.58 16 17 H 0.07 3.79 7.85 -2.91 -0.02 3.76 16 18 C -0.05 -2.79 5.09 84.86 0.43 -2.36 16 19 N -0.94 -55.62 11.01 21.65 0.24 -55.39 16 20 Si 0.97 44.30 29.56 68.60 2.03 46.33 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 C 0.10 4.09 6.73 86.36 0.58 4.67 16 25 C 0.06 1.79 6.98 72.08 0.50 2.30 16 26 O -0.39 -13.52 10.14 -148.98 -1.51 -15.03 16 27 C -0.10 -2.02 4.70 30.74 0.14 -1.88 16 28 C -0.08 -1.16 5.82 29.66 0.17 -0.99 16 29 H 0.08 0.71 5.21 -2.39 -0.01 0.70 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.73 7.93 -2.39 -0.02 0.71 16 33 H 0.07 0.76 7.33 -2.39 -0.02 0.75 16 34 H 0.08 0.76 7.69 -2.39 -0.02 0.74 16 35 H 0.09 1.37 7.89 -2.39 -0.02 1.35 16 36 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.41 9.29 8.03 -92.71 -0.74 8.55 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.07 3.62 6.23 -2.39 -0.01 3.60 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 44 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 47 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 48 H 0.06 1.46 7.89 -2.39 -0.02 1.44 16 49 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -69.35 388.64 1.72 -67.63 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.17 Total: 22.43 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.44 Total: 11.36 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.36 Total: -110.39 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.56 Total: -37.36 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.35 1.72 -67.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035385815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.533 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds