Wall clock time and date at job start Tue Mar 31 2020 14:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47105 * 120.00080 * 2 1 4 4 O 1.21610 * 120.00125 * 281.27343 * 3 2 1 5 5 N 1.34781 * 119.99788 * 101.27026 * 3 2 1 6 6 C 1.47511 * 118.75766 * 355.34920 * 5 3 2 7 7 C 1.53574 * 111.02295 * 221.62431 * 6 5 3 8 8 C 1.51539 * 109.58292 * 39.97655 * 7 6 5 9 9 O 1.42147 * 108.76226 * 268.59958 * 8 7 6 10 10 C 1.38011 * 119.43739 * 87.22611 * 9 8 7 11 11 H 1.08999 * 109.47343 * 56.56880 * 10 9 8 12 12 C 1.53003 * 109.47179 * 176.56900 * 10 9 8 13 13 N 1.46500 * 109.47162 * 299.99791 * 12 10 9 14 14 C 1.36930 * 120.00027 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00170 * 359.72424 * 14 13 12 16 16 C 1.38813 * 120.00225 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99694 * 359.72716 * 16 14 13 18 18 Si 1.86794 * 120.00325 * 179.72564 * 16 14 13 19 19 H 1.48497 * 109.47102 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47118 * 120.00162 * 18 16 14 21 21 H 1.48501 * 109.47115 * 240.00141 * 18 16 14 22 22 C 1.45124 * 118.75558 * 175.34324 * 5 3 2 23 23 C 1.32993 * 119.99594 * 180.02562 * 2 1 3 24 24 C 1.51453 * 126.33567 * 179.68906 * 23 2 1 25 25 C 1.54283 * 106.84818 * 180.24326 * 24 23 2 26 26 C 1.54984 * 103.65787 * 23.48091 * 25 24 23 27 27 C 1.51842 * 126.34337 * 0.02562 * 23 2 1 28 28 H 1.08995 * 109.47236 * 95.09706 * 1 2 3 29 29 H 1.08998 * 109.47365 * 215.09995 * 1 2 3 30 30 H 1.09003 * 109.46565 * 335.09585 * 1 2 3 31 31 H 1.08989 * 109.16772 * 101.22676 * 6 5 3 32 32 H 1.08996 * 109.16728 * 342.01804 * 6 5 3 33 33 H 1.09000 * 109.45513 * 279.94251 * 7 6 5 34 34 H 1.09001 * 109.45446 * 160.01121 * 7 6 5 35 35 H 1.09001 * 109.58630 * 148.81362 * 8 7 6 36 36 H 1.08998 * 109.58792 * 28.38646 * 8 7 6 37 37 H 1.08999 * 109.47336 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47000 * 59.99770 * 12 10 9 39 39 H 0.97001 * 119.99725 * 359.97438 * 13 12 10 40 40 H 0.96995 * 120.00136 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.45970 * 330.69744 * 22 5 3 42 42 H 1.08993 * 109.45867 * 210.73470 * 22 5 3 43 43 H 1.08998 * 109.98218 * 299.72314 * 24 23 2 44 44 H 1.08996 * 109.98670 * 61.02895 * 24 23 2 45 45 H 1.09000 * 110.79212 * 264.85801 * 25 24 23 46 46 H 1.08995 * 110.55748 * 141.99168 * 25 24 23 47 47 H 1.09005 * 110.83325 * 204.49181 * 26 25 24 48 48 H 1.09001 * 110.83525 * 80.91557 * 26 25 24 49 49 H 1.09006 * 110.43971 * 274.92145 * 27 23 2 50 50 H 1.08996 * 110.44135 * 37.44670 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 2.3683 1.9035 -1.0328 5 7 2.7771 1.7435 1.1448 6 6 2.5204 1.0124 2.4000 7 6 2.2324 1.9837 3.5542 8 6 1.3674 3.1235 3.0551 9 8 2.2114 4.1815 2.6204 10 6 2.6801 4.1856 1.3224 11 1 1.8376 4.1514 0.6317 12 6 3.4897 5.4604 1.0765 13 7 2.6348 6.6307 1.2907 14 6 3.1456 7.8907 1.1278 15 1 4.1798 8.0219 0.8459 16 6 2.3355 8.9996 1.3302 17 7 1.0749 8.8398 1.6734 18 14 3.0343 10.7186 1.1156 19 1 4.4652 10.6265 0.7295 20 1 2.2801 11.4304 0.0527 21 1 2.9129 11.4654 2.3934 22 6 3.5835 2.9490 1.0958 23 6 2.1719 -1.1518 -0.0005 24 6 3.6772 -1.3190 -0.0072 25 6 3.9585 -2.8360 -0.0114 26 6 2.6646 -3.4466 -0.6072 27 6 1.5626 -2.5426 -0.0017 28 1 -0.3633 -0.0913 -1.0235 29 1 -0.3634 -0.8408 0.5909 30 1 -0.3632 0.9322 0.4328 31 1 3.3942 0.4103 2.6485 32 1 1.6616 0.3556 2.2624 33 1 3.1723 2.3819 3.9367 34 1 1.7112 1.4549 4.3522 35 1 0.7258 3.4760 3.8627 36 1 0.7543 2.7793 2.2222 37 1 3.8602 5.4635 0.0514 38 1 4.3322 5.4946 1.7672 39 1 1.7069 6.5130 1.5478 40 1 0.5087 9.6146 1.8145 41 1 4.0647 3.0247 0.1207 42 1 4.3452 2.9082 1.8743 43 1 4.0993 -0.8574 -0.8998 44 1 4.1064 -0.8650 0.8859 45 1 4.1232 -3.2018 1.0021 46 1 4.8163 -3.0644 -0.6439 47 1 2.5392 -4.4801 -0.2841 48 1 2.6683 -3.3770 -1.6949 49 1 1.3291 -2.8568 1.0157 50 1 0.6673 -2.5654 -0.6230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200248532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:30 Heat of formation + Delta-G solvation = -59.439604 kcal Electronic energy + Delta-G solvation = -28655.403110 eV Core-core repulsion = 24875.857027 eV Total energy + Delta-G solvation = -3779.546083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72707 -38.90518 -37.94705 -35.57242 -34.53203 -33.73288 -32.77272 -30.85598 -29.51599 -28.72721 -27.93264 -26.68868 -25.51059 -24.07213 -22.58573 -21.68060 -21.08355 -20.89117 -20.06440 -18.13825 -17.13616 -16.81842 -16.54331 -16.37048 -16.02229 -15.63783 -15.41429 -14.69773 -14.30885 -14.22204 -13.75284 -13.66140 -13.60167 -13.45784 -13.11768 -12.99548 -12.82166 -12.65176 -12.46764 -12.25240 -12.08417 -11.93512 -11.64751 -11.53337 -11.46154 -11.38116 -11.31545 -11.02276 -10.92400 -10.76772 -10.74355 -10.21942 -9.97152 -9.75819 -9.62089 -9.34459 -8.93626 -8.79072 -8.51314 -6.79670 -5.65197 -2.93027 1.50366 2.54252 2.96134 3.50469 3.55383 3.58111 3.99095 4.02494 4.28942 4.43291 4.61120 4.63855 4.69638 4.75780 4.77981 4.96920 5.01311 5.03172 5.20369 5.28091 5.28585 5.34852 5.38939 5.41836 5.44186 5.47874 5.50132 5.54248 5.57138 5.64025 5.65343 5.68124 5.69646 5.74101 5.87952 5.89092 6.01578 6.04073 6.08700 6.15023 6.38846 6.40367 6.56130 6.71618 6.83938 7.24290 7.79134 8.06090 8.12069 8.53263 9.64739 10.23720 10.59963 11.57931 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.024990 B = 0.002724 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.166757 B =10275.814690 C =10455.010344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.156 4.156 3 C 0.554 3.446 4 O -0.528 6.528 5 N -0.604 5.604 6 C 0.110 3.890 7 C -0.166 4.166 8 C 0.074 3.926 9 O -0.367 6.367 10 C 0.089 3.911 11 H 0.052 0.948 12 C 0.166 3.834 13 N -0.725 5.725 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.081 3.919 23 C -0.088 4.088 24 C -0.101 4.101 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.092 4.092 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.026 0.974 39 H 0.387 0.613 40 H 0.253 0.747 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -29.393 1.520 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.159 4.159 3 C 0.342 3.658 4 O -0.404 6.404 5 N -0.337 5.337 6 C -0.012 4.012 7 C -0.205 4.205 8 C -0.003 4.003 9 O -0.285 6.285 10 C 0.029 3.971 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.370 5.370 14 C -0.366 4.366 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.042 4.042 23 C -0.089 4.089 24 C -0.138 4.138 25 C -0.159 4.159 26 C -0.161 4.161 27 C -0.129 4.129 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.710 -28.779 1.066 28.849 hybrid contribution -0.012 0.672 -0.122 0.683 sum 1.698 -28.107 0.944 28.174 Atomic orbital electron populations 1.20609 0.89527 1.02764 1.02831 1.20742 0.96683 0.91683 1.06834 1.18571 0.78587 0.85159 0.83516 1.90844 1.58618 1.58912 1.31983 1.47941 1.51378 1.26950 1.07402 1.21921 1.01485 0.94131 0.83668 1.22513 1.02681 0.97659 0.97613 1.22102 0.91965 0.87394 0.98820 1.86435 1.65898 1.46909 1.29249 1.22255 0.96099 0.94679 0.84045 0.93043 1.20612 0.93075 0.84749 0.97750 1.42218 1.11238 1.00222 1.83274 1.19282 0.95326 0.83373 1.38628 0.91157 1.24738 0.95913 0.97789 1.02751 1.69691 1.05329 1.28826 1.54302 0.86110 0.77942 0.84952 0.77169 1.20586 1.21961 1.21947 1.22431 0.94130 0.83832 1.03843 1.22415 0.95755 0.93608 0.97132 1.21271 0.92736 0.97127 1.02693 1.22344 0.97952 0.94390 1.01248 1.22508 0.94441 0.98642 1.00537 1.21444 0.98465 0.91386 1.01564 0.90729 0.91038 0.91605 0.91809 0.89873 0.89971 0.89765 0.89298 0.93582 0.94832 0.95634 0.77868 0.93698 0.89048 0.89856 0.90531 0.90614 0.91260 0.91291 0.91085 0.91159 0.89885 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.47 36.01 0.34 -0.57 16 2 C -0.16 -1.71 3.67 -102.84 -0.38 -2.08 16 3 C 0.55 7.99 6.36 -12.66 -0.08 7.91 16 4 O -0.53 -9.99 16.58 5.27 0.09 -9.90 16 5 N -0.60 -7.79 2.19 -173.86 -0.38 -8.17 16 6 C 0.11 1.05 5.82 -3.19 -0.02 1.03 16 7 C -0.17 -1.67 5.79 -27.17 -0.16 -1.83 16 8 C 0.07 1.01 6.37 36.42 0.23 1.25 16 9 O -0.37 -6.76 9.18 -26.52 -0.24 -7.00 16 10 C 0.09 1.67 2.73 -25.78 -0.07 1.59 16 11 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 12 C 0.17 3.66 5.95 -4.04 -0.02 3.64 16 13 N -0.73 -19.90 5.49 -59.91 -0.33 -20.23 16 14 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 15 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 16 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 17 N -0.93 -29.55 13.06 55.49 0.72 -28.82 16 18 Si 0.91 23.30 29.55 -169.99 -5.02 18.27 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 C 0.08 1.21 4.83 -3.83 -0.02 1.20 16 23 C -0.09 -0.79 5.93 -100.23 -0.59 -1.38 16 24 C -0.10 -0.86 5.90 -26.84 -0.16 -1.02 16 25 C -0.12 -0.77 6.88 -25.01 -0.17 -0.94 16 26 C -0.12 -0.72 6.94 -24.70 -0.17 -0.90 16 27 C -0.09 -0.59 5.72 -26.34 -0.15 -0.74 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.47 7.48 -51.93 -0.39 0.08 16 30 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.06 0.51 7.73 -51.94 -0.40 0.11 16 32 H 0.08 0.69 6.39 -51.93 -0.33 0.36 16 33 H 0.08 0.90 8.01 -51.93 -0.42 0.49 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.39 11.31 7.53 -40.82 -0.31 11.00 16 40 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.09 1.45 7.34 -51.93 -0.38 1.07 16 42 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.64 7.68 -51.93 -0.40 0.24 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.46 7.77 -51.93 -0.40 0.06 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -35.38 392.58 -9.79 -45.17 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.87 Total: 5.29 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.67 Total: -0.52 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.01 Total: -57.23 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.16 Total: -16.90 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.38 -9.79 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200248532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.275 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds