Wall clock time and date at job start Tue Mar 31 2020 14:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47105 * 120.00080 * 2 1 4 4 O 1.21610 * 120.00125 * 281.27343 * 3 2 1 5 5 N 1.34781 * 119.99788 * 101.27026 * 3 2 1 6 6 C 1.47511 * 118.75766 * 355.34920 * 5 3 2 7 7 C 1.53574 * 111.02295 * 221.62431 * 6 5 3 8 8 C 1.51539 * 109.58292 * 39.97655 * 7 6 5 9 9 O 1.42147 * 108.76226 * 268.59958 * 8 7 6 10 10 C 1.38011 * 119.43739 * 87.22611 * 9 8 7 11 11 H 1.08999 * 109.47343 * 56.56880 * 10 9 8 12 12 C 1.53003 * 109.47179 * 176.56900 * 10 9 8 13 13 N 1.46500 * 109.47162 * 299.99791 * 12 10 9 14 14 C 1.36930 * 120.00027 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00170 * 359.72424 * 14 13 12 16 16 C 1.38813 * 120.00225 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99694 * 359.72716 * 16 14 13 18 18 Si 1.86794 * 120.00325 * 179.72564 * 16 14 13 19 19 H 1.48497 * 109.47102 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47118 * 120.00162 * 18 16 14 21 21 H 1.48501 * 109.47115 * 240.00141 * 18 16 14 22 22 C 1.45124 * 118.75558 * 175.34324 * 5 3 2 23 23 C 1.32993 * 119.99594 * 180.02562 * 2 1 3 24 24 C 1.51453 * 126.33567 * 179.68906 * 23 2 1 25 25 C 1.54283 * 106.84818 * 180.24326 * 24 23 2 26 26 C 1.54984 * 103.65787 * 23.48091 * 25 24 23 27 27 C 1.51842 * 126.34337 * 0.02562 * 23 2 1 28 28 H 1.08995 * 109.47236 * 95.09706 * 1 2 3 29 29 H 1.08998 * 109.47365 * 215.09995 * 1 2 3 30 30 H 1.09003 * 109.46565 * 335.09585 * 1 2 3 31 31 H 1.08989 * 109.16772 * 101.22676 * 6 5 3 32 32 H 1.08996 * 109.16728 * 342.01804 * 6 5 3 33 33 H 1.09000 * 109.45513 * 279.94251 * 7 6 5 34 34 H 1.09001 * 109.45446 * 160.01121 * 7 6 5 35 35 H 1.09001 * 109.58630 * 148.81362 * 8 7 6 36 36 H 1.08998 * 109.58792 * 28.38646 * 8 7 6 37 37 H 1.08999 * 109.47336 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47000 * 59.99770 * 12 10 9 39 39 H 0.97001 * 119.99725 * 359.97438 * 13 12 10 40 40 H 0.96995 * 120.00136 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.45970 * 330.69744 * 22 5 3 42 42 H 1.08993 * 109.45867 * 210.73470 * 22 5 3 43 43 H 1.08998 * 109.98218 * 299.72314 * 24 23 2 44 44 H 1.08996 * 109.98670 * 61.02895 * 24 23 2 45 45 H 1.09000 * 110.79212 * 264.85801 * 25 24 23 46 46 H 1.08995 * 110.55748 * 141.99168 * 25 24 23 47 47 H 1.09005 * 110.83325 * 204.49181 * 26 25 24 48 48 H 1.09001 * 110.83525 * 80.91557 * 26 25 24 49 49 H 1.09006 * 110.43971 * 274.92145 * 27 23 2 50 50 H 1.08996 * 110.44135 * 37.44670 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 2.3683 1.9035 -1.0328 5 7 2.7771 1.7435 1.1448 6 6 2.5204 1.0124 2.4000 7 6 2.2324 1.9837 3.5542 8 6 1.3674 3.1235 3.0551 9 8 2.2114 4.1815 2.6204 10 6 2.6801 4.1856 1.3224 11 1 1.8376 4.1514 0.6317 12 6 3.4897 5.4604 1.0765 13 7 2.6348 6.6307 1.2907 14 6 3.1456 7.8907 1.1278 15 1 4.1798 8.0219 0.8459 16 6 2.3355 8.9996 1.3302 17 7 1.0749 8.8398 1.6734 18 14 3.0343 10.7186 1.1156 19 1 4.4652 10.6265 0.7295 20 1 2.2801 11.4304 0.0527 21 1 2.9129 11.4654 2.3934 22 6 3.5835 2.9490 1.0958 23 6 2.1719 -1.1518 -0.0005 24 6 3.6772 -1.3190 -0.0072 25 6 3.9585 -2.8360 -0.0114 26 6 2.6646 -3.4466 -0.6072 27 6 1.5626 -2.5426 -0.0017 28 1 -0.3633 -0.0913 -1.0235 29 1 -0.3634 -0.8408 0.5909 30 1 -0.3632 0.9322 0.4328 31 1 3.3942 0.4103 2.6485 32 1 1.6616 0.3556 2.2624 33 1 3.1723 2.3819 3.9367 34 1 1.7112 1.4549 4.3522 35 1 0.7258 3.4760 3.8627 36 1 0.7543 2.7793 2.2222 37 1 3.8602 5.4635 0.0514 38 1 4.3322 5.4946 1.7672 39 1 1.7069 6.5130 1.5478 40 1 0.5087 9.6146 1.8145 41 1 4.0647 3.0247 0.1207 42 1 4.3452 2.9082 1.8743 43 1 4.0993 -0.8574 -0.8998 44 1 4.1064 -0.8650 0.8859 45 1 4.1232 -3.2018 1.0021 46 1 4.8163 -3.0644 -0.6439 47 1 2.5392 -4.4801 -0.2841 48 1 2.6683 -3.3770 -1.6949 49 1 1.3291 -2.8568 1.0157 50 1 0.6673 -2.5654 -0.6230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200248532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:29 Heat of formation + Delta-G solvation = -81.870147 kcal Electronic energy + Delta-G solvation = -28656.375771 eV Core-core repulsion = 24875.857027 eV Total energy + Delta-G solvation = -3780.518744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.83261 -39.99829 -38.82580 -36.92803 -36.25095 -34.60016 -34.18886 -32.68938 -30.48402 -29.83128 -28.53393 -27.96113 -26.85165 -25.43405 -24.10553 -22.86414 -22.31999 -21.63747 -20.94639 -19.28411 -19.11816 -17.81713 -17.76080 -17.53924 -16.85230 -16.73607 -16.45767 -16.35550 -15.81348 -15.18573 -15.12671 -14.84063 -14.63614 -14.56200 -14.30612 -14.19871 -13.93933 -13.73613 -13.41578 -13.25765 -13.22809 -13.12739 -12.81293 -12.79377 -12.66684 -12.34991 -12.18328 -12.12639 -12.02036 -11.99222 -11.88346 -11.83533 -11.51894 -11.47332 -11.00951 -10.87133 -10.59446 -9.73454 -9.66134 -9.03402 -7.95580 -5.25734 0.73987 1.44464 1.45932 1.47946 1.58156 1.94991 2.54983 2.68811 3.28411 3.37685 3.58937 3.64257 3.78526 3.82520 3.96612 4.03915 4.06044 4.12915 4.19048 4.26481 4.33073 4.37785 4.40041 4.47547 4.49339 4.63937 4.67948 4.69978 4.71522 4.78238 4.80503 4.84855 4.87777 4.93350 5.02164 5.05744 5.09215 5.10216 5.13127 5.16583 5.21178 5.38827 5.45360 5.45924 5.49434 5.69173 6.20592 6.25003 6.71316 7.02723 7.31012 8.04702 8.30639 9.28719 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.024990 B = 0.002724 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.166757 B =10275.814690 C =10455.010344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.183 4.183 3 C 0.550 3.450 4 O -0.587 6.587 5 N -0.600 5.600 6 C 0.107 3.893 7 C -0.155 4.155 8 C 0.065 3.935 9 O -0.395 6.395 10 C 0.106 3.894 11 H 0.016 0.984 12 C 0.163 3.837 13 N -0.740 5.740 14 C -0.247 4.247 15 H 0.078 0.922 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.981 3.019 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.290 1.290 22 C 0.094 3.906 23 C -0.069 4.069 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.090 4.090 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.061 0.939 49 H 0.107 0.893 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -32.228 3.073 32.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.186 4.186 3 C 0.340 3.660 4 O -0.468 6.468 5 N -0.331 5.331 6 C -0.014 4.014 7 C -0.192 4.192 8 C -0.011 4.011 9 O -0.314 6.314 10 C 0.046 3.954 11 H 0.034 0.966 12 C 0.036 3.964 13 N -0.382 5.382 14 C -0.378 4.378 15 H 0.096 0.904 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.809 3.191 19 H -0.188 1.188 20 H -0.220 1.220 21 H -0.217 1.217 22 C -0.031 4.031 23 C -0.069 4.069 24 C -0.145 4.145 25 C -0.154 4.154 26 C -0.160 4.160 27 C -0.126 4.126 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.079 0.921 49 H 0.125 0.875 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.499 -31.670 2.649 31.878 hybrid contribution -0.230 1.474 -0.584 1.603 sum 2.269 -30.195 2.064 30.351 Atomic orbital electron populations 1.20612 0.88334 1.03271 1.02987 1.20620 0.97297 0.90355 1.10285 1.19270 0.77899 0.85991 0.82877 1.90803 1.60846 1.60957 1.34151 1.48047 1.50404 1.26038 1.08622 1.22222 1.03511 0.93997 0.81658 1.22434 1.01942 0.96343 0.98530 1.22398 0.92287 0.87736 0.98698 1.86356 1.66898 1.49585 1.28519 1.21849 0.95091 0.94732 0.83727 0.96615 1.20748 0.93166 0.84803 0.97658 1.42420 1.11203 1.01304 1.83315 1.19722 0.95733 0.84495 1.37888 0.90392 1.25677 0.96322 1.02109 1.03034 1.69865 1.06767 1.29836 1.55756 0.84969 0.77924 0.79362 0.76855 1.18837 1.21956 1.21668 1.22132 0.93841 0.83342 1.03750 1.22716 0.96104 0.94298 0.93832 1.21360 0.92500 0.98964 1.01672 1.22349 0.98348 0.92376 1.02371 1.22534 0.93792 0.99659 1.00037 1.21560 0.98643 0.89290 1.03147 0.91332 0.87822 0.93198 0.89185 0.88011 0.90446 0.86036 0.88551 0.94345 0.94989 0.94716 0.79477 0.93974 0.90492 0.87628 0.92943 0.90303 0.89589 0.91172 0.88996 0.92064 0.87463 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.47 71.24 0.67 -0.97 16 2 C -0.18 -3.84 3.67 -18.70 -0.07 -3.91 16 3 C 0.55 16.29 6.36 86.57 0.55 16.84 16 4 O -0.59 -23.75 16.58 -4.06 -0.07 -23.82 16 5 N -0.60 -15.32 2.19 -822.23 -1.80 -17.12 16 6 C 0.11 1.75 5.82 86.38 0.50 2.25 16 7 C -0.15 -2.69 5.79 30.31 0.18 -2.52 16 8 C 0.06 1.75 6.37 71.50 0.46 2.20 16 9 O -0.39 -14.90 9.18 -117.82 -1.08 -15.98 16 10 C 0.11 4.15 2.73 31.21 0.09 4.24 16 11 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 12 C 0.16 7.47 5.95 86.38 0.51 7.99 16 13 N -0.74 -42.16 5.49 -343.46 -1.88 -44.05 16 14 C -0.25 -14.88 9.99 84.03 0.84 -14.04 16 15 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 17 N -0.97 -63.20 13.06 21.65 0.28 -62.91 16 18 Si 0.98 48.51 29.55 68.60 2.03 50.53 16 19 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 C 0.09 2.86 4.83 87.25 0.42 3.28 16 23 C -0.07 -1.08 5.93 -17.01 -0.10 -1.18 16 24 C -0.11 -1.66 5.90 30.52 0.18 -1.48 16 25 C -0.12 -1.14 6.88 31.71 0.22 -0.92 16 26 C -0.12 -1.04 6.94 31.91 0.22 -0.82 16 27 C -0.09 -0.82 5.72 30.85 0.18 -0.64 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.10 1.06 7.48 -2.39 -0.02 1.04 16 30 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.09 1.08 7.73 -2.39 -0.02 1.06 16 32 H 0.10 1.35 6.39 -2.39 -0.02 1.33 16 33 H 0.08 1.49 8.01 -2.39 -0.02 1.47 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.04 1.09 7.40 -2.39 -0.02 1.07 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.37 22.93 7.53 -92.71 -0.70 22.24 16 40 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.08 2.57 7.34 -2.39 -0.02 2.56 16 42 H 0.11 2.73 8.11 -2.39 -0.02 2.71 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.16 7.68 -2.39 -0.02 1.14 16 45 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.11 0.56 8.14 -2.38 -0.02 0.55 16 50 H 0.08 0.71 7.77 -2.39 -0.02 0.69 16 Total: -1.00 -80.98 392.58 3.00 -77.98 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.21 Total: 29.45 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.31 Total: 5.93 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -3.40 Total: -124.09 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.15 Total: -39.80 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Total: -80.98 3.00 -77.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200248532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.894 kcal (2) G-P(sol) polarization free energy of solvation -80.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds