Wall clock time and date at job start Tue Mar 31 2020 13:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 C 1.50704 * 109.47564 * 179.97438 * 3 2 1 5 5 N 1.30620 * 125.41919 * 90.02427 * 4 3 2 6 6 C 1.33694 * 108.99069 * 179.97438 * 5 4 3 7 7 C 1.50705 * 126.26979 * 180.02562 * 6 5 4 8 8 C 1.36341 * 107.45519 * 359.97438 * 6 5 4 9 9 C 1.46716 * 126.64283 * 179.97438 * 8 6 5 10 10 O 1.21688 * 120.00197 * 354.20039 * 9 8 6 11 11 N 1.34780 * 120.00208 * 174.20047 * 9 8 6 12 12 C 1.46493 * 120.00134 * 183.90693 * 11 9 8 13 13 C 1.50698 * 109.47281 * 83.93778 * 12 11 9 14 14 H 1.08005 * 119.99747 * 3.32155 * 13 12 11 15 15 C 1.37880 * 120.00197 * 183.32667 * 13 12 11 16 16 N 1.31510 * 120.00187 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99773 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47062 * 90.00024 * 17 15 13 19 19 H 1.48500 * 109.46732 * 209.99739 * 17 15 13 20 20 H 1.48496 * 109.47137 * 329.99651 * 17 15 13 21 21 C 1.46500 * 119.99456 * 3.90684 * 11 9 8 22 22 C 1.53003 * 109.47359 * 58.13688 * 21 11 9 23 23 C 1.53001 * 109.46745 * 178.13440 * 21 11 9 24 24 C 1.52997 * 109.47488 * 298.13531 * 21 11 9 25 25 C 1.53004 * 109.47051 * 291.81286 * 24 21 11 26 26 O 1.33665 * 125.42298 * 269.71999 * 4 3 2 27 27 H 1.08993 * 109.46570 * 60.00183 * 1 2 3 28 28 H 1.08997 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46709 * 300.00301 * 1 2 3 30 30 H 1.08998 * 109.47175 * 239.99756 * 2 1 3 31 31 H 1.09006 * 109.47158 * 120.00013 * 2 1 3 32 32 H 1.09002 * 109.47422 * 60.00135 * 3 2 1 33 33 H 1.09001 * 109.47416 * 300.00053 * 3 2 1 34 34 H 1.08998 * 109.46810 * 89.96915 * 7 6 5 35 35 H 1.08999 * 109.46664 * 209.96974 * 7 6 5 36 36 H 1.08996 * 109.46749 * 329.97063 * 7 6 5 37 37 H 1.09006 * 109.47220 * 203.93640 * 12 11 9 38 38 H 1.09001 * 109.47455 * 323.93179 * 12 11 9 39 39 H 0.96998 * 120.00222 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47089 * 85.63363 * 22 21 11 41 41 H 1.08996 * 109.47146 * 205.63381 * 22 21 11 42 42 H 1.08998 * 109.46736 * 325.64138 * 22 21 11 43 43 H 1.08998 * 109.47253 * 60.68543 * 23 21 11 44 44 H 1.09003 * 109.47191 * 180.68894 * 23 21 11 45 45 H 1.09004 * 109.47255 * 300.68561 * 23 21 11 46 46 H 1.08999 * 109.46991 * 51.80668 * 24 21 11 47 47 H 1.09002 * 109.47279 * 171.81505 * 24 21 11 48 48 H 1.08997 * 109.47516 * 186.15547 * 25 24 21 49 49 H 1.09000 * 109.47153 * 306.15840 * 25 24 21 50 50 H 1.09001 * 109.47384 * 66.15570 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3046 1.4428 -1.0635 6 6 5.5868 1.4433 -0.6849 7 6 6.7860 1.4443 -1.5976 8 6 5.6106 1.4438 0.6783 9 6 6.8030 1.4440 1.5332 10 8 7.9084 1.3371 1.0358 11 7 6.6741 1.5625 2.8696 12 6 7.8668 1.6488 3.7158 13 6 8.3505 3.0754 3.7582 14 1 7.7921 3.8501 3.2538 15 6 9.5060 3.3916 4.4408 16 7 10.1858 2.4483 5.0553 17 14 10.1059 5.1599 4.4927 18 1 9.5176 5.8479 5.6699 19 1 11.5870 5.1772 4.5984 20 1 9.6901 5.8603 3.2511 21 6 5.3411 1.6050 3.4759 22 6 4.5719 0.3351 3.1064 23 6 5.4755 1.6953 4.9973 24 6 4.5837 2.8291 2.9573 25 6 5.2390 4.1013 3.4986 26 8 4.3214 1.4480 1.0902 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 7.0741 2.4722 -1.8177 35 1 7.6145 0.9311 -1.1095 36 1 6.5364 0.9303 -2.5258 37 1 7.6210 1.3183 4.7250 38 1 8.6502 1.0115 3.3056 39 1 10.9985 2.6708 5.5358 40 1 4.8165 -0.4568 3.8143 41 1 3.5011 0.5357 3.1414 42 1 4.8502 0.0216 2.1002 43 1 6.0129 2.6062 5.2612 44 1 4.4838 1.7146 5.4492 45 1 6.0257 0.8293 5.3655 46 1 4.6138 2.8402 1.8678 47 1 3.5473 2.7837 3.2919 48 1 4.6375 4.9666 3.2202 49 1 5.3077 4.0408 4.5847 50 1 6.2388 4.2029 3.0764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410723458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:40 Heat of formation + Delta-G solvation = 9.746351 kcal Electronic energy + Delta-G solvation = -30175.730437 eV Core-core repulsion = 26399.184482 eV Total energy + Delta-G solvation = -3776.545955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.52282 -39.49100 -37.14531 -35.57124 -34.91516 -33.24264 -31.85934 -31.44046 -29.95768 -28.73863 -28.36038 -26.53403 -26.22313 -23.34667 -23.14495 -22.33900 -21.56757 -21.07633 -20.65996 -18.38241 -17.24960 -16.86412 -16.44811 -15.73923 -15.48143 -15.21865 -14.65795 -14.45358 -14.30121 -13.97851 -13.81654 -13.39055 -13.27013 -13.18983 -12.85721 -12.55522 -12.50274 -12.31192 -12.19936 -12.07312 -11.80047 -11.75127 -11.69056 -11.37541 -11.26245 -11.09720 -11.03406 -10.96318 -10.69890 -10.58668 -10.51326 -10.40122 -10.29950 -10.03954 -9.78163 -9.40711 -9.09843 -8.55102 -8.42398 -7.67962 -6.05011 -4.08539 1.14168 2.60923 2.67723 3.28980 3.36506 3.40067 3.67374 3.80011 4.01412 4.43786 4.64075 4.67449 4.83826 4.94659 5.02792 5.08198 5.24781 5.29479 5.32829 5.34891 5.40405 5.45396 5.54715 5.70068 5.74589 5.75818 5.82780 5.89597 5.92333 5.96169 5.98388 6.05705 6.08565 6.11876 6.16603 6.23097 6.34703 6.36812 6.55116 6.58615 6.62894 6.79002 6.96314 7.04673 7.42385 7.52600 7.78716 7.94497 8.20658 8.31877 8.80914 8.99504 9.55789 11.03114 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.004368 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.704820 B = 6408.012626 C = 7073.715324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.024 4.024 4 C 0.183 3.817 5 N -0.488 5.488 6 C 0.063 3.937 7 C -0.079 4.079 8 C -0.099 4.099 9 C 0.592 3.408 10 O -0.513 6.513 11 N -0.572 5.572 12 C 0.240 3.760 13 C -0.523 4.523 14 H 0.066 0.934 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.166 3.834 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.162 4.162 26 O -0.154 6.154 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.037 0.963 49 H 0.061 0.939 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.492 -3.493 -6.407 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.062 4.062 4 C -0.023 4.023 5 N -0.219 5.219 6 C -0.061 4.061 7 C -0.136 4.136 8 C -0.154 4.154 9 C 0.377 3.623 10 O -0.391 6.391 11 N -0.302 5.302 12 C 0.122 3.878 13 C -0.561 4.561 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.081 3.919 22 C -0.214 4.214 23 C -0.207 4.207 24 C -0.179 4.179 25 C -0.219 4.219 26 O -0.041 6.041 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.968 -3.580 -7.042 19.628 hybrid contribution 0.526 1.074 0.817 1.448 sum -17.442 -2.506 -6.225 18.689 Atomic orbital electron populations 1.21749 0.94703 1.02182 1.02140 1.21529 0.96355 0.94807 1.03295 1.20175 0.81508 0.99403 1.05112 1.26474 0.96537 0.98887 0.80357 1.70255 1.01617 1.19681 1.30315 1.21974 0.93237 0.99397 0.91497 1.20349 0.92671 1.03457 0.97098 1.23319 0.82824 1.14033 0.95210 1.16313 0.84916 0.78851 0.82202 1.90818 1.23829 1.51132 1.73342 1.48311 1.08112 1.68603 1.05209 1.19491 0.80777 0.97900 0.89630 1.21540 1.08606 0.93307 1.32672 0.91602 1.24892 0.96188 0.97284 0.95503 1.69923 1.16996 1.32231 1.34118 0.86584 0.78065 0.84993 0.78347 1.20688 1.21143 1.19888 1.20393 0.82874 0.94250 0.94391 1.22551 0.99975 0.97361 1.01540 1.22173 1.01283 1.04370 0.92837 1.22506 0.98315 0.94905 1.02202 1.22112 1.02241 0.95582 1.01974 1.85552 1.16570 1.67530 1.34458 0.92382 0.92247 0.92356 0.91068 0.91290 0.88874 0.87887 0.90449 0.88394 0.91097 0.93691 0.93964 0.92774 0.92679 0.92001 0.91817 0.89567 0.92639 0.91971 0.89856 0.92172 0.94393 0.92027 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 3 C -0.02 -0.21 5.84 -27.88 -0.16 -0.38 16 4 C 0.18 2.48 7.57 -12.79 -0.10 2.38 16 5 N -0.49 -7.70 11.26 -7.07 -0.08 -7.78 16 6 C 0.06 1.09 7.16 -82.46 -0.59 0.50 16 7 C -0.08 -1.23 9.94 36.01 0.36 -0.87 16 8 C -0.10 -1.81 4.79 -36.84 -0.18 -1.99 16 9 C 0.59 12.84 6.98 -12.83 -0.09 12.75 16 10 O -0.51 -12.68 14.42 5.20 0.07 -12.60 16 11 N -0.57 -12.06 2.13 -161.69 -0.34 -12.41 16 12 C 0.24 6.00 4.50 -5.20 -0.02 5.98 16 13 C -0.52 -14.03 8.81 -34.44 -0.30 -14.33 16 14 H 0.07 1.77 4.98 -52.48 -0.26 1.50 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.17 2.82 0.74 -131.82 -0.10 2.73 16 22 C -0.16 -2.29 7.55 37.16 0.28 -2.01 16 23 C -0.15 -2.46 6.46 37.16 0.24 -2.22 16 24 C -0.14 -2.24 4.11 -26.73 -0.11 -2.35 16 25 C -0.16 -2.79 9.29 37.16 0.35 -2.45 16 26 O -0.15 -2.34 2.81 4.42 0.01 -2.33 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.68 6.36 -51.93 -0.33 1.35 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.12 5.46 -51.93 -0.28 0.83 16 38 H 0.04 1.21 7.56 -51.93 -0.39 0.81 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 41 H 0.06 0.75 7.62 -51.93 -0.40 0.36 16 42 H 0.06 1.02 4.63 -51.93 -0.24 0.78 16 43 H 0.09 1.61 5.51 -51.93 -0.29 1.32 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.06 6.97 -51.93 -0.36 0.69 16 46 H 0.08 1.41 3.85 -56.08 -0.22 1.20 16 47 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 1.04 5.93 -51.93 -0.31 0.73 16 50 H 0.08 1.64 4.91 -51.93 -0.25 1.38 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -30.94 377.25 -7.19 -38.13 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.94 Total: 2.14 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.31 Total: -2.24 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.31 Total: -45.23 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.09 Total: -14.93 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.94 -7.19 -38.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410723458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.877 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds