Wall clock time and date at job start Tue Mar 31 2020 13:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 C 1.50704 * 109.47564 * 179.97438 * 3 2 1 5 5 N 1.30620 * 125.41919 * 90.02427 * 4 3 2 6 6 C 1.33694 * 108.99069 * 179.97438 * 5 4 3 7 7 C 1.50705 * 126.26979 * 180.02562 * 6 5 4 8 8 C 1.36341 * 107.45519 * 359.97438 * 6 5 4 9 9 C 1.46716 * 126.64283 * 179.97438 * 8 6 5 10 10 O 1.21688 * 120.00197 * 354.20039 * 9 8 6 11 11 N 1.34780 * 120.00208 * 174.20047 * 9 8 6 12 12 C 1.46493 * 120.00134 * 183.90693 * 11 9 8 13 13 C 1.50698 * 109.47281 * 83.93778 * 12 11 9 14 14 H 1.08005 * 119.99747 * 3.32155 * 13 12 11 15 15 C 1.37880 * 120.00197 * 183.32667 * 13 12 11 16 16 N 1.31510 * 120.00187 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99773 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47062 * 90.00024 * 17 15 13 19 19 H 1.48500 * 109.46732 * 209.99739 * 17 15 13 20 20 H 1.48496 * 109.47137 * 329.99651 * 17 15 13 21 21 C 1.46500 * 119.99456 * 3.90684 * 11 9 8 22 22 C 1.53003 * 109.47359 * 58.13688 * 21 11 9 23 23 C 1.53001 * 109.46745 * 178.13440 * 21 11 9 24 24 C 1.52997 * 109.47488 * 298.13531 * 21 11 9 25 25 C 1.53004 * 109.47051 * 291.81286 * 24 21 11 26 26 O 1.33665 * 125.42298 * 269.71999 * 4 3 2 27 27 H 1.08993 * 109.46570 * 60.00183 * 1 2 3 28 28 H 1.08997 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46709 * 300.00301 * 1 2 3 30 30 H 1.08998 * 109.47175 * 239.99756 * 2 1 3 31 31 H 1.09006 * 109.47158 * 120.00013 * 2 1 3 32 32 H 1.09002 * 109.47422 * 60.00135 * 3 2 1 33 33 H 1.09001 * 109.47416 * 300.00053 * 3 2 1 34 34 H 1.08998 * 109.46810 * 89.96915 * 7 6 5 35 35 H 1.08999 * 109.46664 * 209.96974 * 7 6 5 36 36 H 1.08996 * 109.46749 * 329.97063 * 7 6 5 37 37 H 1.09006 * 109.47220 * 203.93640 * 12 11 9 38 38 H 1.09001 * 109.47455 * 323.93179 * 12 11 9 39 39 H 0.96998 * 120.00222 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47089 * 85.63363 * 22 21 11 41 41 H 1.08996 * 109.47146 * 205.63381 * 22 21 11 42 42 H 1.08998 * 109.46736 * 325.64138 * 22 21 11 43 43 H 1.08998 * 109.47253 * 60.68543 * 23 21 11 44 44 H 1.09003 * 109.47191 * 180.68894 * 23 21 11 45 45 H 1.09004 * 109.47255 * 300.68561 * 23 21 11 46 46 H 1.08999 * 109.46991 * 51.80668 * 24 21 11 47 47 H 1.09002 * 109.47279 * 171.81505 * 24 21 11 48 48 H 1.08997 * 109.47516 * 186.15547 * 25 24 21 49 49 H 1.09000 * 109.47153 * 306.15840 * 25 24 21 50 50 H 1.09001 * 109.47384 * 66.15570 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3046 1.4428 -1.0635 6 6 5.5868 1.4433 -0.6849 7 6 6.7860 1.4443 -1.5976 8 6 5.6106 1.4438 0.6783 9 6 6.8030 1.4440 1.5332 10 8 7.9084 1.3371 1.0358 11 7 6.6741 1.5625 2.8696 12 6 7.8668 1.6488 3.7158 13 6 8.3505 3.0754 3.7582 14 1 7.7921 3.8501 3.2538 15 6 9.5060 3.3916 4.4408 16 7 10.1858 2.4483 5.0553 17 14 10.1059 5.1599 4.4927 18 1 9.5176 5.8479 5.6699 19 1 11.5870 5.1772 4.5984 20 1 9.6901 5.8603 3.2511 21 6 5.3411 1.6050 3.4759 22 6 4.5719 0.3351 3.1064 23 6 5.4755 1.6953 4.9973 24 6 4.5837 2.8291 2.9573 25 6 5.2390 4.1013 3.4986 26 8 4.3214 1.4480 1.0902 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 7.0741 2.4722 -1.8177 35 1 7.6145 0.9311 -1.1095 36 1 6.5364 0.9303 -2.5258 37 1 7.6210 1.3183 4.7250 38 1 8.6502 1.0115 3.3056 39 1 10.9985 2.6708 5.5358 40 1 4.8165 -0.4568 3.8143 41 1 3.5011 0.5357 3.1414 42 1 4.8502 0.0216 2.1002 43 1 6.0129 2.6062 5.2612 44 1 4.4838 1.7146 5.4492 45 1 6.0257 0.8293 5.3655 46 1 4.6138 2.8402 1.8678 47 1 3.5473 2.7837 3.2919 48 1 4.6375 4.9666 3.2202 49 1 5.3077 4.0408 4.5847 50 1 6.2388 4.2029 3.0764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410723458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:39 Heat of formation + Delta-G solvation = -9.770205 kcal Electronic energy + Delta-G solvation = -30176.576738 eV Core-core repulsion = 26399.184482 eV Total energy + Delta-G solvation = -3777.392256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.76170 -41.05393 -38.69311 -36.41356 -36.05711 -35.19660 -33.57740 -32.61649 -31.33233 -30.33443 -29.27865 -27.92431 -27.72064 -24.92336 -24.56982 -23.40714 -22.96303 -22.15800 -21.85929 -19.84747 -18.77224 -18.51094 -17.95594 -17.22470 -16.83002 -16.32312 -16.20192 -15.87396 -15.62694 -15.29384 -15.14817 -14.71225 -14.44872 -14.36117 -14.21906 -14.13003 -13.81221 -13.61437 -13.30507 -13.22714 -13.04912 -12.93151 -12.91543 -12.81229 -12.62209 -12.49974 -12.28507 -12.16072 -12.09513 -12.01871 -11.87040 -11.77766 -11.65656 -11.54303 -11.26215 -11.13578 -10.69896 -10.56195 -9.90817 -9.38549 -8.17380 -6.27879 -0.17473 1.35400 1.37894 1.38693 1.41110 1.48160 2.09285 2.29049 2.42902 2.88318 3.13251 3.54629 3.68488 3.77447 4.02456 4.06030 4.09022 4.10812 4.16664 4.39793 4.47810 4.55719 4.64420 4.66094 4.68545 4.72617 4.75026 4.79117 4.80231 4.85940 4.88152 4.95964 4.98785 5.05095 5.08969 5.16819 5.21385 5.23895 5.27448 5.31293 5.34538 5.38843 5.41441 5.49756 5.59206 5.76240 5.88197 6.12915 6.49377 6.69225 6.81828 7.18866 7.42050 8.90121 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.004368 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.704820 B = 6408.012626 C = 7073.715324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.025 4.025 4 C 0.208 3.792 5 N -0.507 5.507 6 C 0.066 3.934 7 C -0.078 4.078 8 C -0.124 4.124 9 C 0.585 3.415 10 O -0.562 6.562 11 N -0.575 5.575 12 C 0.258 3.742 13 C -0.526 4.526 14 H 0.065 0.935 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.276 1.276 21 C 0.156 3.844 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.159 4.159 26 O -0.147 6.147 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.044 0.956 38 H -0.006 1.006 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.100 0.900 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.565 -2.589 -6.535 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.063 4.063 4 C 0.003 3.997 5 N -0.237 5.237 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.178 4.178 9 C 0.373 3.627 10 O -0.444 6.444 11 N -0.304 5.304 12 C 0.138 3.862 13 C -0.564 4.564 14 H 0.082 0.918 15 C -0.187 4.187 16 N -0.568 5.568 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.201 1.201 21 C 0.072 3.928 22 C -0.206 4.206 23 C -0.202 4.202 24 C -0.172 4.172 25 C -0.216 4.216 26 O -0.034 6.034 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.012 0.988 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.119 0.881 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.091 -2.674 -7.163 23.377 hybrid contribution 1.652 0.745 0.801 1.981 sum -20.439 -1.929 -6.363 21.493 Atomic orbital electron populations 1.21721 0.92851 1.02715 1.03048 1.21501 0.97811 0.93725 1.02594 1.20595 0.77773 1.00625 1.07288 1.27621 0.98092 0.94654 0.79336 1.70337 1.00863 1.21408 1.31114 1.22247 0.94359 0.97822 0.91371 1.20340 0.91749 1.03713 0.97685 1.22446 0.83009 1.17703 0.94683 1.16691 0.85668 0.77887 0.82464 1.90774 1.26076 1.53268 1.74295 1.48294 1.08767 1.68354 1.05024 1.18968 0.81423 0.96148 0.89683 1.21800 1.08633 0.94062 1.31917 0.91756 1.25691 0.96469 1.01159 0.95351 1.70042 1.17498 1.34159 1.35130 0.85619 0.77458 0.80397 0.78603 1.19004 1.21002 1.20076 1.20804 0.81060 0.96399 0.94489 1.22484 1.01604 0.95954 1.00581 1.22122 1.03012 1.02331 0.92706 1.22491 0.99954 0.93173 1.01630 1.22031 1.00328 0.97478 1.01738 1.85517 1.15333 1.67798 1.34788 0.91716 0.91988 0.91221 0.92337 0.91595 0.86113 0.86285 0.90037 0.90558 0.88707 0.93820 0.98783 0.92702 0.92432 0.88379 0.93333 0.92215 0.88624 0.93341 0.90645 0.88115 0.92234 0.92029 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 3 C -0.03 -0.33 5.84 29.85 0.17 -0.16 16 4 C 0.21 5.03 7.57 88.29 0.67 5.69 16 5 N -0.51 -15.07 11.26 -291.05 -3.28 -18.34 16 6 C 0.07 2.26 7.16 41.83 0.30 2.56 16 7 C -0.08 -2.48 9.94 71.24 0.71 -1.77 16 8 C -0.12 -4.54 4.79 24.04 0.12 -4.42 16 9 C 0.59 26.57 6.98 86.46 0.60 27.17 16 10 O -0.56 -29.84 14.42 -4.31 -0.06 -29.90 16 11 N -0.57 -25.14 2.13 -783.69 -1.67 -26.80 16 12 C 0.26 13.67 4.50 85.63 0.39 14.05 16 13 C -0.53 -29.45 8.81 25.60 0.23 -29.22 16 14 H 0.06 3.59 4.98 -2.91 -0.01 3.57 16 15 C 0.01 0.68 5.46 84.66 0.46 1.14 16 16 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 17 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 C 0.16 5.13 0.74 3.60 0.00 5.13 16 22 C -0.15 -4.00 7.55 71.98 0.54 -3.46 16 23 C -0.14 -4.60 6.46 71.98 0.46 -4.13 16 24 C -0.14 -3.92 4.11 30.59 0.13 -3.80 16 25 C -0.16 -5.25 9.29 71.98 0.67 -4.58 16 26 O -0.15 -4.13 2.81 -7.09 -0.02 -4.15 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.08 2.78 6.36 -2.39 -0.02 2.77 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.04 2.30 5.46 -2.38 -0.01 2.29 16 38 H -0.01 -0.37 7.56 -2.39 -0.02 -0.38 16 39 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.06 1.51 7.89 -2.39 -0.02 1.49 16 41 H 0.10 1.91 7.62 -2.39 -0.02 1.89 16 42 H 0.05 1.49 4.63 -2.39 -0.01 1.48 16 43 H 0.06 2.22 5.51 -2.39 -0.01 2.21 16 44 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.05 1.65 6.97 -2.39 -0.02 1.63 16 46 H 0.08 2.39 3.85 -68.05 -0.26 2.13 16 47 H 0.10 2.13 7.93 -2.39 -0.02 2.11 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 2.01 5.93 -2.39 -0.01 1.99 16 50 H 0.04 1.50 4.91 -2.39 -0.01 1.49 16 Total: -1.00 -72.19 377.25 4.32 -67.87 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.69 Total: 16.97 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.34 Total: 2.57 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -4.66 Total: -100.45 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.08 Total: -34.05 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.19 4.32 -67.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410723458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.097 kcal (2) G-P(sol) polarization free energy of solvation -72.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds