Wall clock time and date at job start Tue Mar 31 2020 14:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 C 1.53007 * 109.46962 * 240.00329 * 2 1 3 5 5 C 1.50694 * 109.47251 * 120.00407 * 2 1 3 6 6 O 1.21289 * 119.99684 * 10.91012 * 5 2 1 7 7 N 1.34777 * 120.00152 * 190.90695 * 5 2 1 8 8 C 1.47423 * 125.64540 * 9.39734 * 7 5 2 9 9 C 1.54914 * 104.83020 * 204.16108 * 8 7 5 10 10 C 1.55162 * 101.58018 * 322.98995 * 9 8 7 11 11 C 1.47017 * 125.64909 * 189.43391 * 7 5 2 12 12 H 1.09001 * 109.88288 * 298.47790 * 11 7 5 13 13 C 1.50704 * 109.88446 * 59.49009 * 11 7 5 14 14 O 1.21280 * 119.99460 * 9.97727 * 13 11 7 15 15 N 1.34777 * 120.00062 * 189.97471 * 13 11 7 16 16 C 1.46493 * 119.99776 * 185.05058 * 15 13 11 17 17 C 1.52999 * 109.47421 * 174.65399 * 16 15 13 18 18 C 1.50701 * 115.54749 * 294.12516 * 17 16 15 19 19 H 1.07996 * 120.00122 * 114.11978 * 18 17 16 20 20 C 1.37872 * 119.99985 * 294.38580 * 18 17 16 21 21 N 1.31520 * 120.00211 * 182.86951 * 20 18 17 22 22 Si 1.86798 * 119.99928 * 2.86706 * 20 18 17 23 23 H 1.48506 * 109.47260 * 93.79403 * 22 20 18 24 24 H 1.48494 * 109.47389 * 213.79336 * 22 20 18 25 25 H 1.48500 * 109.47434 * 333.79549 * 22 20 18 26 26 C 1.53003 * 117.49692 * 79.78708 * 17 16 15 27 27 C 1.52991 * 117.50122 * 148.44852 * 17 16 15 28 28 H 1.08999 * 109.46918 * 299.99576 * 1 2 3 29 29 H 1.09003 * 109.47174 * 59.99408 * 1 2 3 30 30 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47258 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46956 * 300.00372 * 3 2 1 33 33 H 1.09000 * 109.46898 * 59.99797 * 3 2 1 34 34 H 1.09004 * 109.46752 * 306.71551 * 4 2 1 35 35 H 1.08998 * 109.46949 * 66.71357 * 4 2 1 36 36 H 1.08993 * 109.47014 * 186.71880 * 4 2 1 37 37 H 1.08996 * 110.36835 * 322.99683 * 8 7 5 38 38 H 1.09000 * 110.36447 * 85.32404 * 8 7 5 39 39 H 1.08999 * 111.00563 * 81.06249 * 9 8 7 40 40 H 1.09004 * 111.00305 * 204.91820 * 9 8 7 41 41 H 1.09005 * 110.71854 * 277.13786 * 10 9 8 42 42 H 1.09000 * 110.71836 * 153.86821 * 10 9 8 43 43 H 0.97000 * 119.99758 * 5.05379 * 15 13 11 44 44 H 1.09007 * 109.47339 * 54.65417 * 16 15 13 45 45 H 1.09001 * 109.47739 * 294.65987 * 16 15 13 46 46 H 0.96999 * 119.99667 * 179.97438 * 21 20 18 47 47 H 1.08995 * 117.49872 * 215.00763 * 26 17 16 48 48 H 1.09005 * 117.49946 * 0.03066 * 26 17 16 49 49 H 1.09004 * 117.49974 * 359.97438 * 27 17 16 50 50 H 1.09004 * 117.50218 * 144.97732 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2304 6 8 1.2621 -1.3405 1.9238 7 7 3.3376 -0.6459 1.5602 8 6 4.3406 0.2316 0.9298 9 6 5.6973 -0.4729 1.1805 10 6 5.4901 -1.0495 2.6060 11 6 3.9970 -1.4393 2.6075 12 1 3.5537 -1.2142 3.5775 13 6 3.8506 -2.9087 2.3061 14 8 3.4173 -3.2669 1.2315 15 7 4.2013 -3.8245 3.2306 16 6 4.1641 -5.2510 2.8994 17 6 4.7311 -6.0608 4.0671 18 6 6.1956 -5.8500 4.3536 19 1 6.5036 -5.3892 5.2805 20 6 7.1419 -6.2404 3.4301 21 7 8.4215 -6.1083 3.7037 22 14 6.6065 -6.9569 1.7902 23 1 6.5399 -5.8749 0.7752 24 1 7.5868 -7.9840 1.3551 25 1 5.2672 -7.5815 1.9364 26 6 3.8085 -6.3224 5.2593 27 6 4.1604 -7.4612 4.2988 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5818 -1.7083 -1.3115 35 1 1.7781 -0.1427 -2.1352 36 1 3.1233 -0.8265 -1.1913 37 1 4.1501 0.3183 -0.1399 38 1 4.3318 1.2156 1.3986 39 1 5.8628 -1.2709 0.4566 40 1 6.5185 0.2437 1.1644 41 1 5.6913 -0.2904 3.3620 42 1 6.1180 -1.9267 2.7622 43 1 4.4782 -3.5390 4.1153 44 1 4.7628 -5.4325 2.0067 45 1 3.1337 -5.5542 2.7134 46 1 9.0872 -6.3834 3.0540 47 1 4.2608 -6.3421 6.2508 48 1 2.7974 -5.9180 5.2115 49 1 3.3805 -7.8055 3.6196 50 1 4.8441 -8.2303 4.6581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:23 Heat of formation + Delta-G solvation = -40.192625 kcal Electronic energy + Delta-G solvation = -29360.513962 eV Core-core repulsion = 25581.802491 eV Total energy + Delta-G solvation = -3778.711471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86576 -38.99162 -37.42616 -36.68637 -35.68377 -33.43224 -32.19654 -31.52520 -29.91394 -27.53876 -27.30667 -26.64422 -25.21030 -24.58410 -21.97499 -21.71359 -21.50123 -19.83030 -19.37931 -18.71447 -17.30291 -16.71430 -16.37177 -15.87942 -15.34011 -15.09433 -14.99579 -14.75324 -14.17220 -13.92433 -13.87075 -13.68416 -13.47836 -13.30618 -12.94212 -12.89872 -12.57427 -12.36176 -12.32620 -12.29730 -12.07160 -11.89690 -11.85632 -11.43607 -11.30553 -11.11637 -11.07736 -11.02166 -10.68242 -10.58046 -10.55268 -10.25713 -9.68770 -9.59547 -9.46534 -9.15216 -8.74374 -8.65477 -8.45057 -8.27296 -6.19504 -4.22200 2.66539 2.94002 3.12182 3.27199 3.36785 3.43236 3.77472 4.30069 4.36689 4.42007 4.54326 4.70607 4.72847 4.84919 4.88177 5.09726 5.15121 5.16380 5.18025 5.27875 5.36201 5.42332 5.50849 5.56709 5.66205 5.67267 5.69559 5.71737 5.74481 5.80674 5.91437 5.95389 5.97141 6.08375 6.13913 6.14528 6.15536 6.23602 6.28250 6.45894 6.50586 6.71264 6.94836 7.07243 7.16889 7.53710 7.65966 8.14780 8.28920 8.39538 8.78564 8.81870 9.44230 10.91411 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.003951 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.702508 B = 7085.902501 C = 7579.888569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.166 4.166 4 C -0.137 4.137 5 C 0.549 3.451 6 O -0.531 6.531 7 N -0.600 5.600 8 C 0.095 3.905 9 C -0.136 4.136 10 C -0.124 4.124 11 C 0.119 3.881 12 H 0.097 0.903 13 C 0.504 3.496 14 O -0.543 6.543 15 N -0.700 5.700 16 C 0.157 3.843 17 C -0.018 4.018 18 C -0.486 4.486 19 H 0.078 0.922 20 C 0.084 3.916 21 N -0.894 5.894 22 Si 0.868 3.132 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.253 1.253 26 C -0.180 4.180 27 C -0.185 4.185 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.404 0.596 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.265 0.735 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 16.475 -6.556 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.083 4.083 3 C -0.223 4.223 4 C -0.195 4.195 5 C 0.338 3.662 6 O -0.406 6.406 7 N -0.335 5.335 8 C -0.027 4.027 9 C -0.174 4.174 10 C -0.162 4.162 11 C 0.012 3.988 12 H 0.114 0.886 13 C 0.288 3.712 14 O -0.420 6.420 15 N -0.350 5.350 16 C 0.033 3.967 17 C -0.019 4.019 18 C -0.523 4.523 19 H 0.096 0.904 20 C -0.119 4.119 21 N -0.530 5.530 22 Si 0.697 3.303 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.177 1.177 26 C -0.217 4.217 27 C -0.224 4.224 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.238 0.762 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.853 15.827 -7.046 19.455 hybrid contribution 0.073 -0.429 -0.485 0.651 sum -8.780 15.398 -7.531 19.259 Atomic orbital electron populations 1.21666 0.92094 1.03029 1.01623 1.20712 0.97727 0.96112 0.93756 1.22454 1.03162 0.94038 1.02624 1.21825 1.01775 1.00738 0.95124 1.20163 0.80035 0.80280 0.85692 1.90687 1.54646 1.42764 1.52469 1.48125 1.07809 1.40482 1.37076 1.22727 0.87783 0.93491 0.98737 1.22868 0.96531 1.00782 0.97266 1.22677 0.92509 1.03072 0.97964 1.21488 0.94788 0.89623 0.92930 0.88571 1.20628 0.77862 0.87941 0.84809 1.90635 1.45189 1.81581 1.24606 1.45739 1.66940 1.06639 1.15689 1.21105 0.98282 0.79283 0.98014 1.19605 0.95213 0.94104 0.92990 1.20229 0.85685 1.41038 1.05337 0.90351 1.24881 0.94576 0.94396 0.98070 1.69886 1.00133 1.47323 1.35704 0.87040 0.79494 0.79401 0.84411 1.20542 1.21933 1.17651 1.22796 0.98795 1.04507 0.95640 1.23026 1.02939 0.93321 1.03069 0.92309 0.92123 0.91662 0.90131 0.91625 0.92256 0.91730 0.91680 0.91852 0.89457 0.90810 0.90170 0.89327 0.89355 0.88397 0.76156 0.92488 0.93708 0.92493 0.89532 0.90861 0.91147 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.83 37.16 0.29 -1.13 16 2 C -0.08 -0.93 0.75 -155.66 -0.12 -1.05 16 3 C -0.17 -1.38 7.94 37.16 0.30 -1.08 16 4 C -0.14 -1.54 8.28 37.16 0.31 -1.23 16 5 C 0.55 8.63 5.62 -10.99 -0.06 8.57 16 6 O -0.53 -10.54 15.88 5.55 0.09 -10.46 16 7 N -0.60 -8.40 2.82 -164.33 -0.46 -8.86 16 8 C 0.09 0.93 4.74 -2.53 -0.01 0.92 16 9 C -0.14 -1.41 7.09 -24.58 -0.17 -1.59 16 10 C -0.12 -1.48 6.48 -24.89 -0.16 -1.64 16 11 C 0.12 1.78 3.25 -68.11 -0.22 1.55 16 12 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.50 9.81 6.50 -10.98 -0.07 9.74 16 14 O -0.54 -12.45 15.69 5.56 0.09 -12.37 16 15 N -0.70 -13.78 5.47 -60.29 -0.33 -14.11 16 16 C 0.16 3.47 4.99 -4.05 -0.02 3.45 16 17 C -0.02 -0.40 0.78 -155.66 -0.12 -0.52 16 18 C -0.49 -12.64 9.33 -34.44 -0.32 -12.96 16 19 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 20 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 21 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 22 Si 0.87 21.56 24.68 -169.99 -4.19 17.36 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.25 -6.02 5.93 56.52 0.34 -5.68 16 26 C -0.18 -3.53 9.96 -26.69 -0.27 -3.80 16 27 C -0.19 -3.87 8.59 -26.70 -0.23 -4.10 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.85 7.98 -51.93 -0.41 0.44 16 31 H 0.08 0.58 3.58 -51.93 -0.19 0.40 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.73 6.25 -51.93 -0.32 0.41 16 37 H 0.09 0.76 4.40 -51.93 -0.23 0.53 16 38 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.39 7.82 -51.93 -0.41 0.98 16 43 H 0.40 7.19 8.48 -40.82 -0.35 6.84 16 44 H 0.06 1.39 4.51 -51.92 -0.23 1.16 16 45 H 0.04 0.99 8.09 -51.93 -0.42 0.57 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 50 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -34.04 385.37 -7.71 -41.75 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.50 Total: 8.72 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.98 Total: -2.68 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.02 Total: -48.14 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.19 Total: 17.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.04 -7.71 -41.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.561 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds