Wall clock time and date at job start Tue Mar 31 2020 14:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 C 1.53007 * 109.46962 * 240.00329 * 2 1 3 5 5 C 1.50694 * 109.47251 * 120.00407 * 2 1 3 6 6 O 1.21289 * 119.99684 * 10.91012 * 5 2 1 7 7 N 1.34777 * 120.00152 * 190.90695 * 5 2 1 8 8 C 1.47423 * 125.64540 * 9.39734 * 7 5 2 9 9 C 1.54914 * 104.83020 * 204.16108 * 8 7 5 10 10 C 1.55162 * 101.58018 * 322.98995 * 9 8 7 11 11 C 1.47017 * 125.64909 * 189.43391 * 7 5 2 12 12 H 1.09001 * 109.88288 * 298.47790 * 11 7 5 13 13 C 1.50704 * 109.88446 * 59.49009 * 11 7 5 14 14 O 1.21280 * 119.99460 * 9.97727 * 13 11 7 15 15 N 1.34777 * 120.00062 * 189.97471 * 13 11 7 16 16 C 1.46493 * 119.99776 * 185.05058 * 15 13 11 17 17 C 1.52999 * 109.47421 * 174.65399 * 16 15 13 18 18 C 1.50701 * 115.54749 * 294.12516 * 17 16 15 19 19 H 1.07996 * 120.00122 * 114.11978 * 18 17 16 20 20 C 1.37872 * 119.99985 * 294.38580 * 18 17 16 21 21 N 1.31520 * 120.00211 * 182.86951 * 20 18 17 22 22 Si 1.86798 * 119.99928 * 2.86706 * 20 18 17 23 23 H 1.48506 * 109.47260 * 93.79403 * 22 20 18 24 24 H 1.48494 * 109.47389 * 213.79336 * 22 20 18 25 25 H 1.48500 * 109.47434 * 333.79549 * 22 20 18 26 26 C 1.53003 * 117.49692 * 79.78708 * 17 16 15 27 27 C 1.52991 * 117.50122 * 148.44852 * 17 16 15 28 28 H 1.08999 * 109.46918 * 299.99576 * 1 2 3 29 29 H 1.09003 * 109.47174 * 59.99408 * 1 2 3 30 30 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47258 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46956 * 300.00372 * 3 2 1 33 33 H 1.09000 * 109.46898 * 59.99797 * 3 2 1 34 34 H 1.09004 * 109.46752 * 306.71551 * 4 2 1 35 35 H 1.08998 * 109.46949 * 66.71357 * 4 2 1 36 36 H 1.08993 * 109.47014 * 186.71880 * 4 2 1 37 37 H 1.08996 * 110.36835 * 322.99683 * 8 7 5 38 38 H 1.09000 * 110.36447 * 85.32404 * 8 7 5 39 39 H 1.08999 * 111.00563 * 81.06249 * 9 8 7 40 40 H 1.09004 * 111.00305 * 204.91820 * 9 8 7 41 41 H 1.09005 * 110.71854 * 277.13786 * 10 9 8 42 42 H 1.09000 * 110.71836 * 153.86821 * 10 9 8 43 43 H 0.97000 * 119.99758 * 5.05379 * 15 13 11 44 44 H 1.09007 * 109.47339 * 54.65417 * 16 15 13 45 45 H 1.09001 * 109.47739 * 294.65987 * 16 15 13 46 46 H 0.96999 * 119.99667 * 179.97438 * 21 20 18 47 47 H 1.08995 * 117.49872 * 215.00763 * 26 17 16 48 48 H 1.09005 * 117.49946 * 0.03066 * 26 17 16 49 49 H 1.09004 * 117.49974 * 359.97438 * 27 17 16 50 50 H 1.09004 * 117.50218 * 144.97732 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2304 6 8 1.2621 -1.3405 1.9238 7 7 3.3376 -0.6459 1.5602 8 6 4.3406 0.2316 0.9298 9 6 5.6973 -0.4729 1.1805 10 6 5.4901 -1.0495 2.6060 11 6 3.9970 -1.4393 2.6075 12 1 3.5537 -1.2142 3.5775 13 6 3.8506 -2.9087 2.3061 14 8 3.4173 -3.2669 1.2315 15 7 4.2013 -3.8245 3.2306 16 6 4.1641 -5.2510 2.8994 17 6 4.7311 -6.0608 4.0671 18 6 6.1956 -5.8500 4.3536 19 1 6.5036 -5.3892 5.2805 20 6 7.1419 -6.2404 3.4301 21 7 8.4215 -6.1083 3.7037 22 14 6.6065 -6.9569 1.7902 23 1 6.5399 -5.8749 0.7752 24 1 7.5868 -7.9840 1.3551 25 1 5.2672 -7.5815 1.9364 26 6 3.8085 -6.3224 5.2593 27 6 4.1604 -7.4612 4.2988 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5818 -1.7083 -1.3115 35 1 1.7781 -0.1427 -2.1352 36 1 3.1233 -0.8265 -1.1913 37 1 4.1501 0.3183 -0.1399 38 1 4.3318 1.2156 1.3986 39 1 5.8628 -1.2709 0.4566 40 1 6.5185 0.2437 1.1644 41 1 5.6913 -0.2904 3.3620 42 1 6.1180 -1.9267 2.7622 43 1 4.4782 -3.5390 4.1153 44 1 4.7628 -5.4325 2.0067 45 1 3.1337 -5.5542 2.7134 46 1 9.0872 -6.3834 3.0540 47 1 4.2608 -6.3421 6.2508 48 1 2.7974 -5.9180 5.2115 49 1 3.3805 -7.8055 3.6196 50 1 4.8441 -8.2303 4.6581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:22 Heat of formation + Delta-G solvation = -63.943381 kcal Electronic energy + Delta-G solvation = -29361.543873 eV Core-core repulsion = 25581.802491 eV Total energy + Delta-G solvation = -3779.741381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02513 -40.43022 -38.90319 -38.09775 -36.70730 -35.08876 -34.29605 -32.56190 -31.02142 -28.64906 -28.28636 -27.96978 -26.98666 -25.71149 -23.42827 -22.96485 -22.58384 -21.33054 -20.93379 -19.98922 -18.80993 -18.16517 -17.73065 -17.24394 -17.00945 -16.41081 -16.33993 -16.09726 -15.54177 -15.33510 -14.93855 -14.87695 -14.79837 -14.65345 -14.42906 -14.19720 -14.01808 -13.81290 -13.58108 -13.22809 -13.11574 -13.04448 -12.85761 -12.73660 -12.67745 -12.32870 -12.32049 -12.24992 -12.12838 -12.02375 -11.92463 -11.58021 -11.35354 -11.06336 -10.96662 -10.75148 -10.71004 -10.42914 -9.98638 -9.69347 -8.34364 -6.37249 1.24945 1.32208 1.41510 1.49217 1.60165 1.90771 2.28736 2.31702 2.96816 3.26391 3.36010 3.52900 3.60931 3.76573 3.84149 3.91448 3.96598 4.02000 4.19265 4.23218 4.28694 4.39998 4.42181 4.44912 4.57079 4.65432 4.68341 4.69917 4.78180 4.78927 4.85880 4.86794 4.90074 4.92135 5.00484 5.01225 5.04155 5.15282 5.18816 5.20842 5.24477 5.32017 5.38038 5.44132 5.51362 5.65618 6.27000 6.46126 6.61013 6.70151 7.12121 7.25221 7.31067 8.79907 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.003951 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.702508 B = 7085.902501 C = 7579.888569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.159 4.159 4 C -0.133 4.133 5 C 0.536 3.464 6 O -0.586 6.586 7 N -0.602 5.602 8 C 0.091 3.909 9 C -0.133 4.133 10 C -0.119 4.119 11 C 0.118 3.882 12 H 0.105 0.895 13 C 0.496 3.504 14 O -0.583 6.583 15 N -0.700 5.700 16 C 0.164 3.836 17 C -0.041 4.041 18 C -0.471 4.471 19 H 0.052 0.948 20 C 0.042 3.958 21 N -0.934 5.934 22 Si 0.914 3.086 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.238 1.238 26 C -0.154 4.154 27 C -0.183 4.183 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.050 0.950 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.412 0.588 44 H 0.032 0.968 45 H 0.045 0.955 46 H 0.266 0.734 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 19.010 -7.191 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.216 4.216 4 C -0.191 4.191 5 C 0.326 3.674 6 O -0.466 6.466 7 N -0.335 5.335 8 C -0.030 4.030 9 C -0.171 4.171 10 C -0.157 4.157 11 C 0.010 3.990 12 H 0.123 0.877 13 C 0.282 3.718 14 O -0.463 6.463 15 N -0.350 5.350 16 C 0.040 3.960 17 C -0.042 4.042 18 C -0.508 4.508 19 H 0.070 0.930 20 C -0.157 4.157 21 N -0.574 5.574 22 Si 0.742 3.258 23 H -0.220 1.220 24 H -0.219 1.219 25 H -0.161 1.161 26 C -0.191 4.191 27 C -0.222 4.222 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.088 0.912 43 H 0.248 0.752 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.456 18.382 -7.671 22.049 hybrid contribution 0.250 -1.219 -0.230 1.265 sum -9.206 17.163 -7.900 21.018 Atomic orbital electron populations 1.21665 0.92143 1.01482 1.02911 1.20813 0.97760 0.97997 0.91607 1.22445 1.03979 0.91206 1.03964 1.21819 1.01133 0.99664 0.96455 1.21069 0.80191 0.79783 0.86324 1.90645 1.56239 1.45265 1.54432 1.48331 1.08067 1.40327 1.36795 1.23103 0.85938 0.94088 0.99854 1.22911 0.98306 1.00759 0.95146 1.22717 0.89538 1.03039 1.00372 1.21590 0.97112 0.86492 0.93764 0.87684 1.21560 0.76401 0.89896 0.83946 1.90605 1.46888 1.82625 1.26224 1.45742 1.66977 1.05970 1.16305 1.20864 0.97592 0.80738 0.96832 1.19451 0.93754 0.95935 0.95059 1.20326 0.87649 1.39098 1.03738 0.93002 1.25406 0.94570 0.95264 1.00440 1.69975 1.01088 1.49534 1.36790 0.86313 0.79794 0.78424 0.81315 1.22028 1.21940 1.16060 1.22832 0.98982 1.02543 0.94754 1.23073 1.02986 0.92489 1.03614 0.92766 0.88963 0.94672 0.88795 0.89115 0.92127 0.94928 0.88205 0.92295 0.88037 0.86990 0.93085 0.85593 0.85639 0.91151 0.75200 0.95028 0.93670 0.92522 0.89029 0.88738 0.89488 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 7.83 71.98 0.56 -2.14 16 2 C -0.08 -1.72 0.75 -52.93 -0.04 -1.75 16 3 C -0.16 -2.03 7.94 71.98 0.57 -1.46 16 4 C -0.13 -2.83 8.28 71.98 0.60 -2.23 16 5 C 0.54 16.70 5.62 87.66 0.49 17.19 16 6 O -0.59 -24.07 15.88 -3.06 -0.05 -24.12 16 7 N -0.60 -16.12 2.82 -792.19 -2.23 -18.35 16 8 C 0.09 1.48 4.74 86.86 0.41 1.90 16 9 C -0.13 -2.44 7.09 31.99 0.23 -2.22 16 10 C -0.12 -2.65 6.48 31.78 0.21 -2.44 16 11 C 0.12 3.46 3.25 44.60 0.15 3.60 16 12 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 13 C 0.50 19.71 6.50 87.66 0.57 20.28 16 14 O -0.58 -27.72 15.69 -3.03 -0.05 -27.77 16 15 N -0.70 -27.94 5.47 -463.06 -2.53 -30.47 16 16 C 0.16 7.31 4.99 86.38 0.43 7.74 16 17 C -0.04 -1.81 0.78 -52.93 -0.04 -1.85 16 18 C -0.47 -24.77 9.33 25.60 0.24 -24.53 16 19 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 20 C 0.04 2.36 5.47 84.65 0.46 2.82 16 21 N -0.93 -55.48 13.96 21.45 0.30 -55.19 16 22 Si 0.91 45.28 24.68 68.60 1.69 46.97 16 23 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 24 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.24 -11.04 5.93 99.48 0.59 -10.45 16 26 C -0.15 -5.76 9.96 30.62 0.30 -5.45 16 27 C -0.18 -7.36 8.59 30.62 0.26 -7.10 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.03 0.95 7.98 -2.39 -0.02 0.93 16 31 H 0.09 0.93 3.58 -2.39 -0.01 0.92 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.28 6.25 -2.39 -0.01 1.27 16 37 H 0.10 1.41 4.40 -2.39 -0.01 1.40 16 38 H 0.11 1.08 7.67 -2.39 -0.02 1.06 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.13 1.88 8.14 -2.38 -0.02 1.87 16 42 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 43 H 0.41 14.80 8.48 -92.71 -0.79 14.01 16 44 H 0.03 1.57 4.51 -2.38 -0.01 1.56 16 45 H 0.05 1.99 8.09 -2.39 -0.02 1.98 16 46 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 47 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 48 H 0.09 3.16 8.14 -2.38 -0.02 3.15 16 49 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 50 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -78.54 385.37 2.57 -75.97 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.03 Total: 30.56 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.40 Total: 2.39 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.46 Total: -104.00 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.10 Total: -51.89 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.69 Total: 46.97 kcal Total: -78.54 2.57 -75.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.023 kcal (2) G-P(sol) polarization free energy of solvation -78.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds