Wall clock time and date at job start Tue Mar 31 2020 14:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 C 1.53010 * 109.47249 * 120.00139 * 2 1 3 5 5 H 1.09003 * 110.42822 * 307.99124 * 4 2 1 6 6 C 1.54802 * 110.48898 * 185.44699 * 4 2 1 7 7 C 1.54992 * 102.09163 * 220.44057 * 6 4 2 8 8 O 1.44376 * 103.49006 * 37.02402 * 7 6 4 9 9 C 1.43744 * 106.97545 * 319.93671 * 8 7 6 10 10 H 1.08999 * 109.88052 * 267.09046 * 9 8 7 11 11 C 1.50707 * 109.87711 * 145.93767 * 9 8 7 12 12 O 1.21274 * 120.00032 * 299.21269 * 11 9 8 13 13 N 1.34778 * 119.99662 * 119.21112 * 11 9 8 14 14 C 1.47162 * 120.70824 * 356.04043 * 13 11 9 15 15 C 1.54287 * 107.81977 * 132.71393 * 14 13 11 16 16 H 1.09003 * 112.53485 * 182.35662 * 15 14 13 17 17 C 1.54543 * 107.97395 * 306.71793 * 15 14 13 18 18 C 1.54278 * 104.84747 * 89.01884 * 17 15 14 19 19 C 1.54546 * 104.85099 * 0.02562 * 18 17 15 20 20 H 1.09003 * 112.17913 * 147.01609 * 19 18 17 21 21 C 1.47159 * 120.70774 * 176.32172 * 13 11 9 22 22 N 1.48303 * 104.35648 * 24.70301 * 19 18 17 23 23 C 1.36941 * 128.07996 * 139.08250 * 22 19 18 24 24 H 1.08000 * 119.99764 * 202.40698 * 23 22 19 25 25 C 1.38806 * 119.99800 * 22.40293 * 23 22 19 26 26 N 1.31620 * 120.00213 * 6.19003 * 25 23 22 27 27 Si 1.86795 * 119.99959 * 186.18747 * 25 23 22 28 28 H 1.48503 * 109.47274 * 59.99821 * 27 25 23 29 29 H 1.48500 * 109.47463 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47044 * 299.99924 * 27 25 23 31 31 H 1.08997 * 109.47513 * 307.73557 * 1 2 3 32 32 H 1.09007 * 109.47257 * 187.73745 * 1 2 3 33 33 H 1.08998 * 109.47284 * 67.73548 * 1 2 3 34 34 H 1.09001 * 109.47102 * 239.99662 * 2 1 3 35 35 H 1.09001 * 109.47256 * 59.99756 * 3 2 1 36 36 H 1.09006 * 109.47114 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46782 * 300.00006 * 3 2 1 38 38 H 1.09009 * 110.90755 * 338.63563 * 6 4 2 39 39 H 1.09001 * 110.90864 * 102.23932 * 6 4 2 40 40 H 1.09006 * 110.62148 * 155.52230 * 7 6 4 41 41 H 1.08999 * 110.61717 * 278.52156 * 7 6 4 42 42 H 1.08999 * 109.74755 * 252.40843 * 14 13 11 43 43 H 1.08994 * 109.75025 * 13.14581 * 14 13 11 44 44 H 1.09003 * 110.36381 * 330.17876 * 17 15 14 45 45 H 1.09000 * 110.45650 * 207.90937 * 17 15 14 46 46 H 1.09004 * 110.36393 * 241.15948 * 18 17 15 47 47 H 1.09005 * 110.45384 * 118.89541 * 18 17 15 48 48 H 1.09008 * 109.75126 * 346.85181 * 21 13 11 49 49 H 1.08996 * 109.75542 * 107.58566 * 21 13 11 50 50 H 0.97001 * 119.99989 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5740 -0.3083 2.1440 6 6 3.5816 -0.6169 1.3438 7 6 3.9741 -2.0365 1.8264 8 8 3.0452 -2.8970 1.1327 9 6 1.7694 -2.2349 1.1465 10 1 1.1887 -2.5669 2.0071 11 6 1.0218 -2.5365 -0.1268 12 8 1.4903 -2.2104 -1.1968 13 7 -0.1675 -3.1687 -0.0764 14 6 -0.7098 -3.6483 1.2048 15 6 -2.1855 -3.2060 1.2881 16 1 -2.6536 -3.4880 2.2313 17 6 -2.2409 -1.6813 1.0421 18 6 -2.3848 -1.5325 -0.4868 19 6 -2.4039 -2.9808 -1.0256 20 1 -3.0349 -3.0831 -1.9085 21 6 -0.9485 -3.3994 -1.3021 22 7 -2.8846 -3.7926 0.1186 23 6 -3.7672 -4.8395 0.0998 24 1 -4.3052 -5.1083 0.9969 25 6 -3.9704 -5.5549 -1.0722 26 7 -3.2286 -5.3079 -2.1310 27 14 -5.2967 -6.8682 -1.1466 28 1 -6.6191 -6.2526 -0.8682 29 1 -5.3106 -7.4816 -2.4990 30 1 -5.0144 -7.9149 -0.1318 31 1 -0.3634 0.6289 0.8127 32 1 -0.3634 -1.0184 0.1384 33 1 -0.3634 0.3894 -0.9510 34 1 1.8932 -0.5139 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 4.0176 -0.4035 0.3678 39 1 3.8764 0.1373 2.0734 40 1 4.9999 -2.2693 1.5403 41 1 3.8462 -2.1242 2.9053 42 1 -0.6452 -4.7356 1.2481 43 1 -0.1465 -3.2121 2.0296 44 1 -1.3205 -1.2081 1.3842 45 1 -3.1019 -1.2447 1.5483 46 1 -1.5351 -0.9862 -0.8963 47 1 -3.3166 -1.0238 -0.7340 48 1 -0.5412 -2.8003 -2.1166 49 1 -0.9133 -4.4559 -1.5679 50 1 -3.3710 -5.8077 -2.9501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029310539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:55 Heat of formation + Delta-G solvation = -8.325722 kcal Electronic energy + Delta-G solvation = -31030.778568 eV Core-core repulsion = 27253.448950 eV Total energy + Delta-G solvation = -3777.329618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15298 -39.19286 -37.35882 -35.60050 -33.77687 -32.45906 -30.99063 -30.87808 -29.60578 -29.09987 -27.06273 -26.03858 -24.23542 -23.78605 -22.79596 -22.03918 -20.53474 -19.73166 -19.28852 -18.51782 -17.42391 -16.69611 -16.23375 -16.04348 -15.54518 -14.79073 -14.58234 -14.48245 -14.12463 -14.05128 -13.65069 -13.48565 -13.01686 -12.87266 -12.73197 -12.52098 -12.29828 -12.22235 -11.95737 -11.68704 -11.64390 -11.48621 -11.33156 -11.12700 -10.99938 -10.87510 -10.79343 -10.68871 -10.49539 -10.32445 -10.19517 -9.90770 -9.87516 -9.77676 -9.60785 -9.54841 -8.81752 -8.67577 -7.94717 -6.76277 -5.87313 -3.25936 2.83766 3.35078 3.40304 3.41339 3.50154 4.17836 4.38499 4.40616 4.63643 4.69857 4.98003 5.04119 5.12865 5.22338 5.30554 5.32338 5.36407 5.38897 5.54331 5.59143 5.62419 5.70850 5.72653 5.74853 5.79150 5.85918 5.89396 5.93548 5.98476 6.01662 6.12832 6.23344 6.31537 6.33680 6.40666 6.52202 6.56274 6.62925 6.68570 6.72499 6.80762 6.87251 6.88836 7.02241 7.33020 7.50079 7.68849 8.08079 8.13900 8.69818 9.03874 9.65526 10.45571 11.26557 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.004280 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.419245 B = 6539.861603 C = 6909.897728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.123 4.123 3 C -0.142 4.142 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.146 4.146 7 C 0.045 3.955 8 O -0.355 6.355 9 C 0.055 3.945 10 H 0.088 0.912 11 C 0.518 3.482 12 O -0.537 6.537 13 N -0.588 5.588 14 C 0.089 3.911 15 C 0.133 3.867 16 H 0.078 0.922 17 C -0.134 4.134 18 C -0.160 4.160 19 C 0.174 3.826 20 H 0.106 0.894 21 C 0.111 3.889 22 N -0.581 5.581 23 C -0.233 4.233 24 H 0.073 0.927 25 C 0.004 3.996 26 N -0.909 5.909 27 Si 0.911 3.089 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.108 10.946 8.703 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.141 4.141 3 C -0.199 4.199 4 C -0.117 4.117 5 H 0.102 0.898 6 C -0.184 4.184 7 C -0.032 4.032 8 O -0.274 6.274 9 C -0.006 4.006 10 H 0.105 0.895 11 C 0.306 3.694 12 O -0.417 6.417 13 N -0.320 5.320 14 C -0.037 4.037 15 C 0.024 3.976 16 H 0.096 0.904 17 C -0.173 4.173 18 C -0.199 4.199 19 C 0.066 3.934 20 H 0.124 0.876 21 C -0.012 4.012 22 N -0.302 5.302 23 C -0.362 4.362 24 H 0.090 0.910 25 C -0.194 4.194 26 N -0.553 5.553 27 Si 0.741 3.259 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.248 10.674 7.865 16.757 hybrid contribution -0.730 -0.566 0.212 0.948 sum 9.518 10.108 8.076 16.062 Atomic orbital electron populations 1.22910 0.94943 1.04665 1.01271 1.21942 0.96481 0.95999 0.99644 1.21847 1.00530 0.96375 1.01168 1.22438 0.96029 0.93258 0.99974 0.89814 1.23217 0.95104 0.97402 1.02671 1.23593 0.94255 0.89095 0.96263 1.88947 1.18224 1.42635 1.77565 1.23010 0.86886 0.93413 0.97317 0.89486 1.19899 0.81263 0.78226 0.90025 1.90475 1.67428 1.52697 1.31059 1.48286 1.18836 1.54950 1.09974 1.22783 0.96951 0.99747 0.84170 1.22064 0.89933 0.92195 0.93416 0.90376 1.22756 1.00286 0.97201 0.97075 1.23174 1.01102 0.99961 0.95657 1.21702 0.92106 0.86207 0.93371 0.87613 1.22516 0.92021 1.02689 0.83951 1.45093 1.48857 1.34980 1.01262 1.18890 1.14682 1.05360 0.97233 0.90950 1.24976 0.99169 0.98247 0.97050 1.69841 1.39869 1.43127 1.02488 0.86235 0.81346 0.81478 0.76821 1.21114 1.21584 1.21026 0.93406 0.88068 0.92527 0.85995 0.93474 0.92976 0.92904 0.89886 0.90272 0.88870 0.92128 0.91280 0.91510 0.91867 0.92689 0.90505 0.93020 0.91485 0.89590 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 5.62 37.15 0.21 -2.37 16 2 C -0.12 -1.67 1.88 -90.62 -0.17 -1.84 16 3 C -0.14 -1.57 8.87 37.16 0.33 -1.24 16 4 C -0.10 -1.20 2.62 -89.09 -0.23 -1.43 16 5 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.15 -1.51 5.62 -24.73 -0.14 -1.65 16 7 C 0.04 0.48 7.72 38.21 0.29 0.78 16 8 O -0.36 -5.58 11.17 -39.08 -0.44 -6.02 16 9 C 0.05 0.81 3.50 -27.31 -0.10 0.72 16 10 H 0.09 1.18 5.18 -51.93 -0.27 0.91 16 11 C 0.52 9.51 3.96 -10.98 -0.04 9.47 16 12 O -0.54 -11.22 13.18 1.71 0.02 -11.20 16 13 N -0.59 -11.20 1.69 -171.25 -0.29 -11.49 16 14 C 0.09 1.56 5.86 -3.01 -0.02 1.54 16 15 C 0.13 2.47 4.32 -65.43 -0.28 2.19 16 16 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 17 C -0.13 -2.23 5.75 -25.25 -0.15 -2.37 16 18 C -0.16 -2.95 5.70 -25.25 -0.14 -3.10 16 19 C 0.17 3.85 3.07 -65.63 -0.20 3.65 16 20 H 0.11 2.68 6.81 -51.93 -0.35 2.32 16 21 C 0.11 2.43 5.74 -3.19 -0.02 2.41 16 22 N -0.58 -13.45 2.79 -152.31 -0.42 -13.88 16 23 C -0.23 -6.02 10.35 -15.06 -0.16 -6.17 16 24 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 25 C 0.00 0.10 5.43 -17.43 -0.09 0.01 16 26 N -0.91 -24.82 10.23 55.49 0.57 -24.25 16 27 Si 0.91 21.06 29.56 -169.99 -5.02 16.04 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.05 0.60 7.97 -51.93 -0.41 0.19 16 32 H 0.10 1.58 0.56 -51.92 -0.03 1.55 16 33 H 0.06 0.84 7.38 -51.93 -0.38 0.45 16 34 H 0.12 2.07 5.00 -52.28 -0.26 1.81 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.52 6.71 -51.93 -0.35 0.17 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.93 7.21 -51.92 -0.37 0.55 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 0.95 5.17 -51.93 -0.27 0.68 16 44 H 0.06 0.93 4.96 -51.93 -0.26 0.68 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.36 3.73 -51.93 -0.19 1.16 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 1.48 7.14 -51.92 -0.37 1.11 16 49 H 0.09 2.19 7.36 -51.93 -0.38 1.81 16 50 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -29.07 348.70 -8.92 -37.99 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.68 Total: 6.97 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.91 Total: 0.59 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.15 Total: -49.62 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.41 Total: -17.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.07 -8.92 -37.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029310539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.666 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds