Wall clock time and date at job start Tue Mar 31 2020 14:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 C 1.53010 * 109.47249 * 120.00139 * 2 1 3 5 5 H 1.09003 * 110.42822 * 307.99124 * 4 2 1 6 6 C 1.54802 * 110.48898 * 185.44699 * 4 2 1 7 7 C 1.54992 * 102.09163 * 220.44057 * 6 4 2 8 8 O 1.44376 * 103.49006 * 37.02402 * 7 6 4 9 9 C 1.43744 * 106.97545 * 319.93671 * 8 7 6 10 10 H 1.08999 * 109.88052 * 267.09046 * 9 8 7 11 11 C 1.50707 * 109.87711 * 145.93767 * 9 8 7 12 12 O 1.21274 * 120.00032 * 299.21269 * 11 9 8 13 13 N 1.34778 * 119.99662 * 119.21112 * 11 9 8 14 14 C 1.47162 * 120.70824 * 356.04043 * 13 11 9 15 15 C 1.54287 * 107.81977 * 132.71393 * 14 13 11 16 16 H 1.09003 * 112.53485 * 182.35662 * 15 14 13 17 17 C 1.54543 * 107.97395 * 306.71793 * 15 14 13 18 18 C 1.54278 * 104.84747 * 89.01884 * 17 15 14 19 19 C 1.54546 * 104.85099 * 0.02562 * 18 17 15 20 20 H 1.09003 * 112.17913 * 147.01609 * 19 18 17 21 21 C 1.47159 * 120.70774 * 176.32172 * 13 11 9 22 22 N 1.48303 * 104.35648 * 24.70301 * 19 18 17 23 23 C 1.36941 * 128.07996 * 139.08250 * 22 19 18 24 24 H 1.08000 * 119.99764 * 202.40698 * 23 22 19 25 25 C 1.38806 * 119.99800 * 22.40293 * 23 22 19 26 26 N 1.31620 * 120.00213 * 6.19003 * 25 23 22 27 27 Si 1.86795 * 119.99959 * 186.18747 * 25 23 22 28 28 H 1.48503 * 109.47274 * 59.99821 * 27 25 23 29 29 H 1.48500 * 109.47463 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47044 * 299.99924 * 27 25 23 31 31 H 1.08997 * 109.47513 * 307.73557 * 1 2 3 32 32 H 1.09007 * 109.47257 * 187.73745 * 1 2 3 33 33 H 1.08998 * 109.47284 * 67.73548 * 1 2 3 34 34 H 1.09001 * 109.47102 * 239.99662 * 2 1 3 35 35 H 1.09001 * 109.47256 * 59.99756 * 3 2 1 36 36 H 1.09006 * 109.47114 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46782 * 300.00006 * 3 2 1 38 38 H 1.09009 * 110.90755 * 338.63563 * 6 4 2 39 39 H 1.09001 * 110.90864 * 102.23932 * 6 4 2 40 40 H 1.09006 * 110.62148 * 155.52230 * 7 6 4 41 41 H 1.08999 * 110.61717 * 278.52156 * 7 6 4 42 42 H 1.08999 * 109.74755 * 252.40843 * 14 13 11 43 43 H 1.08994 * 109.75025 * 13.14581 * 14 13 11 44 44 H 1.09003 * 110.36381 * 330.17876 * 17 15 14 45 45 H 1.09000 * 110.45650 * 207.90937 * 17 15 14 46 46 H 1.09004 * 110.36393 * 241.15948 * 18 17 15 47 47 H 1.09005 * 110.45384 * 118.89541 * 18 17 15 48 48 H 1.09008 * 109.75126 * 346.85181 * 21 13 11 49 49 H 1.08996 * 109.75542 * 107.58566 * 21 13 11 50 50 H 0.97001 * 119.99989 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5740 -0.3083 2.1440 6 6 3.5816 -0.6169 1.3438 7 6 3.9741 -2.0365 1.8264 8 8 3.0452 -2.8970 1.1327 9 6 1.7694 -2.2349 1.1465 10 1 1.1887 -2.5669 2.0071 11 6 1.0218 -2.5365 -0.1268 12 8 1.4903 -2.2104 -1.1968 13 7 -0.1675 -3.1687 -0.0764 14 6 -0.7098 -3.6483 1.2048 15 6 -2.1855 -3.2060 1.2881 16 1 -2.6536 -3.4880 2.2313 17 6 -2.2409 -1.6813 1.0421 18 6 -2.3848 -1.5325 -0.4868 19 6 -2.4039 -2.9808 -1.0256 20 1 -3.0349 -3.0831 -1.9085 21 6 -0.9485 -3.3994 -1.3021 22 7 -2.8846 -3.7926 0.1186 23 6 -3.7672 -4.8395 0.0998 24 1 -4.3052 -5.1083 0.9969 25 6 -3.9704 -5.5549 -1.0722 26 7 -3.2286 -5.3079 -2.1310 27 14 -5.2967 -6.8682 -1.1466 28 1 -6.6191 -6.2526 -0.8682 29 1 -5.3106 -7.4816 -2.4990 30 1 -5.0144 -7.9149 -0.1318 31 1 -0.3634 0.6289 0.8127 32 1 -0.3634 -1.0184 0.1384 33 1 -0.3634 0.3894 -0.9510 34 1 1.8932 -0.5139 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 4.0176 -0.4035 0.3678 39 1 3.8764 0.1373 2.0734 40 1 4.9999 -2.2693 1.5403 41 1 3.8462 -2.1242 2.9053 42 1 -0.6452 -4.7356 1.2481 43 1 -0.1465 -3.2121 2.0296 44 1 -1.3205 -1.2081 1.3842 45 1 -3.1019 -1.2447 1.5483 46 1 -1.5351 -0.9862 -0.8963 47 1 -3.3166 -1.0238 -0.7340 48 1 -0.5412 -2.8003 -2.1166 49 1 -0.9133 -4.4559 -1.5679 50 1 -3.3710 -5.8077 -2.9501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029310539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:54 Heat of formation + Delta-G solvation = -25.059511 kcal Electronic energy + Delta-G solvation = -31031.504200 eV Core-core repulsion = 27253.448950 eV Total energy + Delta-G solvation = -3778.055250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46710 -40.52492 -38.77631 -36.64966 -35.45093 -34.20570 -32.45960 -32.02370 -31.12544 -30.33685 -28.34679 -27.36958 -25.68507 -25.51858 -24.06000 -22.94378 -21.82495 -21.22968 -20.67515 -20.09082 -18.78745 -18.09802 -17.58245 -17.37495 -16.83333 -16.57303 -15.89046 -15.69236 -15.59593 -15.15886 -15.02582 -14.71751 -14.57421 -14.40345 -14.13097 -13.82756 -13.58295 -13.37717 -13.16878 -13.05789 -13.00811 -12.77297 -12.67809 -12.66199 -12.51695 -12.26459 -12.04039 -11.93322 -11.91690 -11.77624 -11.53420 -11.44219 -11.24022 -11.12001 -11.03424 -10.86153 -10.65432 -10.10537 -9.56857 -8.60024 -7.86800 -5.25360 1.47800 1.48795 1.50866 1.56100 2.05940 2.50926 3.10873 3.34305 3.40885 3.46978 3.60008 3.71041 3.99351 4.09085 4.09775 4.17443 4.25703 4.29087 4.34516 4.39841 4.41337 4.47468 4.53661 4.64742 4.73722 4.77312 4.81709 4.86716 4.87430 4.95031 4.96963 5.02847 5.06937 5.08018 5.10743 5.15211 5.18511 5.25135 5.27281 5.38534 5.44992 5.54109 5.57663 5.60917 5.69098 5.85072 5.87592 6.24829 6.61347 7.06492 7.24381 7.73083 8.55288 9.25779 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.004280 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.419245 B = 6539.861603 C = 6909.897728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.122 4.122 3 C -0.136 4.136 4 C -0.095 4.095 5 H 0.117 0.883 6 C -0.140 4.140 7 C 0.037 3.963 8 O -0.391 6.391 9 C 0.059 3.941 10 H 0.107 0.893 11 C 0.514 3.486 12 O -0.569 6.569 13 N -0.591 5.591 14 C 0.093 3.907 15 C 0.127 3.873 16 H 0.095 0.905 17 C -0.120 4.120 18 C -0.150 4.150 19 C 0.173 3.827 20 H 0.063 0.937 21 C 0.129 3.871 22 N -0.602 5.602 23 C -0.237 4.237 24 H 0.079 0.921 25 C -0.051 4.051 26 N -0.936 5.936 27 Si 0.970 3.030 28 H -0.279 1.279 29 H -0.301 1.301 30 H -0.278 1.278 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.039 0.961 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 13.148 12.569 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.140 4.140 3 C -0.193 4.193 4 C -0.114 4.114 5 H 0.135 0.865 6 C -0.177 4.177 7 C -0.038 4.038 8 O -0.310 6.310 9 C -0.002 4.002 10 H 0.124 0.876 11 C 0.304 3.696 12 O -0.450 6.450 13 N -0.323 5.323 14 C -0.032 4.032 15 C 0.020 3.980 16 H 0.113 0.887 17 C -0.158 4.158 18 C -0.189 4.189 19 C 0.065 3.935 20 H 0.081 0.919 21 C 0.005 3.995 22 N -0.324 5.324 23 C -0.366 4.366 24 H 0.097 0.903 25 C -0.246 4.246 26 N -0.582 5.582 27 Si 0.799 3.201 28 H -0.205 1.205 29 H -0.227 1.227 30 H -0.204 1.204 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.261 12.898 11.782 20.784 hybrid contribution -0.952 -1.235 -1.023 1.865 sum 10.309 11.662 10.759 18.922 Atomic orbital electron populations 1.22859 0.95613 1.03919 1.01413 1.21789 0.95939 0.97451 0.98839 1.21788 1.01162 0.94548 1.01824 1.22547 0.97646 0.90935 1.00301 0.86505 1.23222 0.93470 0.98049 1.02984 1.23915 0.93835 0.88590 0.97459 1.88919 1.19112 1.44344 1.78644 1.23066 0.86687 0.95444 0.94965 0.87561 1.20702 0.80601 0.76959 0.91309 1.90489 1.67960 1.53596 1.32934 1.48259 1.19242 1.55528 1.09315 1.22801 0.97001 0.98704 0.84649 1.22349 0.89977 0.93279 0.92408 0.88661 1.22688 1.02401 0.95620 0.95131 1.23070 1.01443 0.96973 0.97405 1.21519 0.91050 0.88740 0.92197 0.91920 1.21954 0.92832 0.99356 0.85357 1.45291 1.49247 1.34800 1.03044 1.19235 1.14761 1.05441 0.97149 0.90346 1.25680 1.01323 1.00512 0.97113 1.70049 1.41485 1.44102 1.02611 0.85293 0.79335 0.79358 0.76075 1.20526 1.22739 1.20405 0.90879 0.89633 0.94117 0.90003 0.91387 0.91985 0.93669 0.91398 0.86716 0.87913 0.89366 0.93648 0.86968 0.89089 0.91134 0.89740 0.93117 0.92875 0.94236 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 5.62 71.98 0.40 -4.30 16 2 C -0.12 -3.02 1.88 -10.79 -0.02 -3.04 16 3 C -0.14 -2.57 8.87 71.98 0.64 -1.93 16 4 C -0.10 -1.94 2.62 -9.80 -0.03 -1.97 16 5 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.14 -2.31 5.62 31.89 0.18 -2.13 16 7 C 0.04 0.68 7.72 72.66 0.56 1.24 16 8 O -0.39 -11.42 11.17 -145.30 -1.62 -13.04 16 9 C 0.06 1.58 3.50 30.22 0.11 1.69 16 10 H 0.11 2.38 5.18 -2.39 -0.01 2.37 16 11 C 0.51 18.67 3.96 87.66 0.35 19.02 16 12 O -0.57 -24.48 13.18 0.67 0.01 -24.47 16 13 N -0.59 -22.64 1.69 -814.11 -1.37 -24.01 16 14 C 0.09 3.11 5.86 86.69 0.51 3.62 16 15 C 0.13 4.50 4.32 45.60 0.20 4.70 16 16 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 17 C -0.12 -3.62 5.75 31.55 0.18 -3.43 16 18 C -0.15 -5.48 5.70 31.55 0.18 -5.30 16 19 C 0.17 7.99 3.07 45.49 0.14 8.13 16 20 H 0.06 3.41 6.81 -2.39 -0.02 3.40 16 21 C 0.13 6.03 5.74 86.57 0.50 6.52 16 22 N -0.60 -28.26 2.79 -635.80 -1.77 -30.04 16 23 C -0.24 -12.41 10.35 84.03 0.87 -11.54 16 24 H 0.08 3.92 7.84 -2.91 -0.02 3.90 16 25 C -0.05 -2.79 5.43 84.86 0.46 -2.33 16 26 N -0.94 -54.28 10.23 21.65 0.22 -54.06 16 27 Si 0.97 44.56 29.56 68.60 2.03 46.58 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 30 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 31 H 0.07 1.51 7.97 -2.39 -0.02 1.49 16 32 H 0.09 2.48 0.56 -2.38 0.00 2.48 16 33 H 0.04 1.16 7.38 -2.39 -0.02 1.14 16 34 H 0.08 2.77 5.00 -7.99 -0.04 2.73 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.04 6.71 -2.38 -0.02 1.03 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.34 7.21 -2.38 -0.02 1.32 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.74 5.17 -2.39 -0.01 2.73 16 44 H 0.09 2.27 4.96 -2.39 -0.01 2.26 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 2.96 3.73 -2.38 -0.01 2.96 16 47 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.05 2.55 7.14 -2.38 -0.02 2.53 16 49 H 0.04 2.18 7.36 -2.39 -0.02 2.17 16 50 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -68.82 348.70 3.64 -65.18 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.93 Total: 24.91 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.22 Total: 8.94 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -2.92 Total: -108.10 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.61 Total: -37.52 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.82 3.64 -65.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029310539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.125 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds