Wall clock time and date at job start Tue Mar 31 2020 13:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.53007 * 109.47184 * 240.00381 * 2 1 3 5 5 C 1.53000 * 109.47333 * 120.00211 * 2 1 3 6 6 H 1.09000 * 115.54584 * 274.33104 * 5 2 1 7 7 C 1.53070 * 117.49669 * 128.59986 * 5 2 1 8 8 C 1.52996 * 117.49689 * 59.99699 * 5 2 1 9 9 H 1.09000 * 117.50396 * 359.97438 * 8 5 2 10 10 C 1.50702 * 117.49831 * 214.97838 * 8 5 2 11 11 O 1.21278 * 120.00218 * 0.09389 * 10 8 5 12 12 N 1.34776 * 120.00259 * 180.08561 * 10 8 5 13 13 C 1.46498 * 120.00489 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.55724 * 36.22780 * 13 12 10 15 15 C 1.54548 * 110.50994 * 273.55452 * 13 12 10 16 16 O 1.44637 * 105.02645 * 217.70663 * 15 13 12 17 17 C 1.43249 * 105.22540 * 39.03388 * 16 15 13 18 18 C 1.52874 * 115.85540 * 191.17729 * 17 16 15 19 19 N 1.47788 * 85.78472 * 219.39847 * 18 17 16 20 20 C 1.36939 * 134.39950 * 203.89800 * 19 18 17 21 21 H 1.08004 * 119.99679 * 173.47254 * 20 19 18 22 22 C 1.38810 * 120.00230 * 353.46646 * 20 19 18 23 23 N 1.31614 * 119.99963 * 5.09516 * 22 20 19 24 24 Si 1.86797 * 120.00033 * 185.09110 * 22 20 19 25 25 H 1.48500 * 109.47225 * 94.99148 * 24 22 20 26 26 H 1.48505 * 109.47111 * 214.99037 * 24 22 20 27 27 H 1.48506 * 109.47158 * 334.99008 * 24 22 20 28 28 C 1.47778 * 91.19614 * 23.86701 * 19 18 17 29 29 C 1.53468 * 106.25897 * 321.06250 * 17 16 15 30 30 H 1.09003 * 109.47160 * 299.99765 * 1 2 3 31 31 H 1.09000 * 109.47390 * 59.99841 * 1 2 3 32 32 H 1.08996 * 109.47528 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47546 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47368 * 300.00256 * 3 2 1 35 35 H 1.09001 * 109.47321 * 59.99856 * 3 2 1 36 36 H 1.09004 * 109.46482 * 300.00108 * 4 2 1 37 37 H 1.09000 * 109.47138 * 59.99624 * 4 2 1 38 38 H 1.08995 * 109.46811 * 180.02562 * 4 2 1 39 39 H 1.08993 * 117.51359 * 145.03639 * 7 5 2 40 40 H 1.09001 * 117.49176 * 0.02562 * 7 5 2 41 41 H 0.97006 * 119.99408 * 0.02562 * 12 10 8 42 42 H 1.08990 * 110.33144 * 98.82366 * 15 13 12 43 43 H 1.09003 * 110.32605 * 336.59418 * 15 13 12 44 44 H 1.09004 * 113.82289 * 333.60701 * 18 17 16 45 45 H 1.08997 * 113.82672 * 105.18544 * 18 17 16 46 46 H 0.97000 * 120.00023 * 179.97438 * 23 22 20 47 47 H 1.08998 * 113.82635 * 221.91581 * 28 19 18 48 48 H 1.09010 * 113.93070 * 90.36124 * 28 19 18 49 49 H 1.08996 * 110.57705 * 264.14905 * 29 17 16 50 50 H 1.08999 * 110.70096 * 141.32484 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 2.1267 -0.1060 2.1448 7 6 3.0742 -1.8322 1.0511 8 6 1.6357 -2.1852 1.4342 9 1 1.0060 -2.6344 0.6662 10 6 1.3884 -2.6664 2.8408 11 8 1.5105 -1.9012 3.7737 12 7 1.0315 -3.9471 3.0620 13 6 0.7906 -4.4147 4.4292 14 1 0.3200 -3.6320 5.0241 15 6 2.1126 -4.8730 5.0856 16 8 1.7569 -6.0303 5.8770 17 6 0.8026 -6.7482 5.0858 18 6 0.0613 -7.8791 5.7990 19 7 0.2063 -8.6262 4.5321 20 6 -0.4739 -9.6604 3.9465 21 1 -0.2267 -9.9688 2.9414 22 6 -1.4811 -10.3123 4.6446 23 7 -1.8509 -9.8737 5.8291 24 14 -2.3117 -11.8121 3.9028 25 1 -1.6519 -13.0433 4.4068 26 1 -3.7456 -11.8254 4.2889 27 1 -2.1980 -11.7598 2.4231 28 6 1.3780 -7.8110 4.1494 29 6 -0.0865 -5.6895 4.4196 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2490 39 1 3.8417 -1.9479 1.8162 40 1 3.3912 -2.0485 0.0308 41 1 0.9341 -4.5592 2.3157 42 1 2.5110 -4.0852 5.7248 43 1 2.8401 -5.1460 4.3212 44 1 0.6155 -8.3125 6.6315 45 1 -0.9711 -7.6379 6.0521 46 1 -2.5550 -10.3291 6.3168 47 1 1.3854 -7.5159 3.1002 48 1 2.3308 -8.2223 4.4830 49 1 -0.9960 -5.5330 4.9995 50 1 -0.3303 -5.9790 3.3974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053868816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:53 Heat of formation + Delta-G solvation = -8.490051 kcal Electronic energy + Delta-G solvation = -27821.137674 eV Core-core repulsion = 24043.800930 eV Total energy + Delta-G solvation = -3777.336744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62312 -39.80105 -38.32307 -36.21244 -34.49043 -34.10569 -32.10691 -30.29457 -28.17073 -27.74449 -27.59138 -25.89393 -24.97780 -24.63208 -23.16391 -22.14991 -21.11748 -20.34201 -18.82278 -18.68549 -17.61746 -16.81871 -16.42827 -15.90147 -15.39246 -15.17468 -14.91372 -14.74774 -14.50632 -14.41290 -14.06893 -13.95695 -13.32294 -13.00679 -12.98146 -12.79227 -12.66704 -12.65225 -12.22448 -12.05495 -11.95322 -11.59514 -11.49238 -11.45181 -11.34635 -11.04016 -10.99185 -10.90991 -10.80659 -10.57499 -10.51556 -10.34757 -10.25399 -10.05405 -9.84665 -9.66298 -9.10972 -8.96820 -8.81735 -6.94758 -5.84144 -3.16191 2.39762 3.00274 3.35931 3.40796 3.43282 3.57767 4.21679 4.29824 4.40183 4.48400 4.51057 4.62982 4.73357 4.81593 4.85547 4.95466 5.04662 5.11430 5.19146 5.20388 5.30081 5.34045 5.35744 5.38485 5.46075 5.46426 5.53898 5.59043 5.61192 5.68315 5.72567 5.82663 5.89729 5.92749 5.95334 6.03350 6.05961 6.10800 6.24995 6.33164 6.41286 6.57925 6.63886 6.98630 7.16688 7.44505 7.45904 7.55159 7.90064 8.16468 8.97783 9.63984 10.52186 11.33933 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002496 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.015884 B =11216.819849 C =12003.978188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.138 4.138 4 C -0.147 4.147 5 C -0.106 4.106 6 H 0.117 0.883 7 C -0.153 4.153 8 C -0.188 4.188 9 H 0.123 0.877 10 C 0.543 3.457 11 O -0.543 6.543 12 N -0.714 5.714 13 C 0.111 3.889 14 H 0.099 0.901 15 C 0.040 3.960 16 O -0.359 6.359 17 C 0.048 3.952 18 C 0.183 3.817 19 N -0.604 5.604 20 C -0.225 4.225 21 H 0.082 0.918 22 C -0.005 4.005 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.107 3.893 29 C -0.118 4.118 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.403 0.597 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.256 0.744 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.088 0.912 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 20.122 -12.576 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 C -0.196 4.196 4 C -0.204 4.204 5 C -0.125 4.125 6 H 0.135 0.865 7 C -0.190 4.190 8 C -0.209 4.209 9 H 0.140 0.860 10 C 0.330 3.670 11 O -0.420 6.420 12 N -0.366 5.366 13 C 0.006 3.994 14 H 0.117 0.883 15 C -0.039 4.039 16 O -0.276 6.276 17 C 0.008 3.992 18 C 0.058 3.942 19 N -0.333 5.333 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.563 5.563 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.020 4.020 29 C -0.156 4.156 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.238 0.762 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.107 0.893 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.603 20.355 -11.679 24.669 hybrid contribution -0.547 -1.357 -0.821 1.677 sum 7.056 18.998 -12.500 23.811 Atomic orbital electron populations 1.21858 0.94108 1.02054 1.01798 1.20111 0.95658 0.95283 0.93015 1.21832 1.01126 0.94759 1.01847 1.22039 1.01206 1.00350 0.96836 1.22455 1.01085 0.89151 0.99761 0.86499 1.23227 0.90489 1.01977 1.03287 1.22270 1.01474 1.01378 0.95793 0.85952 1.19705 0.75881 0.81711 0.89751 1.90688 1.51598 1.54946 1.44749 1.46046 1.70125 1.11250 1.09153 1.22506 0.96570 0.97495 0.82868 0.88264 1.23721 0.95776 0.89074 0.95308 1.89033 1.61272 1.36338 1.41003 1.24237 0.89386 0.91580 0.94028 1.22119 0.98195 0.84467 0.89416 1.45725 1.28851 1.39235 1.19457 1.18961 1.12288 1.06777 0.97188 0.90065 1.24842 0.99597 0.99306 0.96481 1.69825 1.31879 1.41163 1.13453 0.86115 0.78570 0.82952 0.78207 1.21539 1.21643 1.20536 1.22907 0.92266 0.90328 0.96455 1.22642 0.98411 0.91766 1.02799 0.92391 0.92623 0.92539 0.92462 0.92550 0.92443 0.92448 0.92515 0.92102 0.88385 0.87212 0.76181 0.89307 0.92426 0.94330 0.90538 0.93444 0.93913 0.94124 0.89344 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.31 37.16 0.31 -0.71 16 2 C -0.04 -0.28 0.88 -154.51 -0.14 -0.42 16 3 C -0.14 -0.87 8.46 37.16 0.31 -0.56 16 4 C -0.15 -0.86 7.07 37.16 0.26 -0.60 16 5 C -0.11 -0.91 4.66 -90.59 -0.42 -1.33 16 6 H 0.12 1.22 7.64 -51.93 -0.40 0.82 16 7 C -0.15 -1.20 9.27 -26.70 -0.25 -1.44 16 8 C -0.19 -1.70 5.04 -91.77 -0.46 -2.17 16 9 H 0.12 0.92 7.07 -51.93 -0.37 0.55 16 10 C 0.54 6.73 7.61 -10.98 -0.08 6.64 16 11 O -0.54 -8.64 15.97 5.56 0.09 -8.56 16 12 N -0.71 -8.45 5.12 -52.13 -0.27 -8.72 16 13 C 0.11 1.57 3.42 -66.20 -0.23 1.34 16 14 H 0.10 1.49 7.68 -51.93 -0.40 1.09 16 15 C 0.04 0.60 7.37 37.97 0.28 0.88 16 16 O -0.36 -6.73 11.44 -35.23 -0.40 -7.13 16 17 C 0.05 0.93 1.29 -90.66 -0.12 0.82 16 18 C 0.18 4.40 6.96 -3.40 -0.02 4.38 16 19 N -0.60 -15.31 3.70 -183.61 -0.68 -15.99 16 20 C -0.22 -6.18 10.69 -15.06 -0.16 -6.34 16 21 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.92 -26.87 11.52 55.49 0.64 -26.23 16 24 Si 0.91 21.76 29.56 -169.99 -5.02 16.73 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 C 0.11 2.20 8.42 -3.40 -0.03 2.17 16 29 C -0.12 -1.92 6.23 -25.57 -0.16 -2.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.33 7.07 -51.93 -0.37 -0.03 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.33 6.97 -51.93 -0.36 -0.03 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.11 0.68 5.85 -51.93 -0.30 0.37 16 41 H 0.40 4.00 8.31 -40.82 -0.34 3.66 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.06 0.82 8.06 -51.93 -0.42 0.41 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.96 7.30 -51.93 -0.38 1.59 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.04 0.79 8.02 -51.93 -0.42 0.38 16 48 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 49 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 50 H 0.09 1.37 7.41 -51.93 -0.38 0.98 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -31.90 394.08 -9.41 -41.31 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.70 Total: 2.28 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.00 Total: 0.36 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.31 Total: -50.94 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.31 Total: -15.69 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.90 -9.41 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053868816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.816 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds