Wall clock time and date at job start Tue Mar 31 2020 13:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.53007 * 109.47184 * 240.00381 * 2 1 3 5 5 C 1.53000 * 109.47333 * 120.00211 * 2 1 3 6 6 H 1.09000 * 115.54584 * 274.33104 * 5 2 1 7 7 C 1.53070 * 117.49669 * 128.59986 * 5 2 1 8 8 C 1.52996 * 117.49689 * 59.99699 * 5 2 1 9 9 H 1.09000 * 117.50396 * 359.97438 * 8 5 2 10 10 C 1.50702 * 117.49831 * 214.97838 * 8 5 2 11 11 O 1.21278 * 120.00218 * 0.09389 * 10 8 5 12 12 N 1.34776 * 120.00259 * 180.08561 * 10 8 5 13 13 C 1.46498 * 120.00489 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.55724 * 36.22780 * 13 12 10 15 15 C 1.54548 * 110.50994 * 273.55452 * 13 12 10 16 16 O 1.44637 * 105.02645 * 217.70663 * 15 13 12 17 17 C 1.43249 * 105.22540 * 39.03388 * 16 15 13 18 18 C 1.52874 * 115.85540 * 191.17729 * 17 16 15 19 19 N 1.47788 * 85.78472 * 219.39847 * 18 17 16 20 20 C 1.36939 * 134.39950 * 203.89800 * 19 18 17 21 21 H 1.08004 * 119.99679 * 173.47254 * 20 19 18 22 22 C 1.38810 * 120.00230 * 353.46646 * 20 19 18 23 23 N 1.31614 * 119.99963 * 5.09516 * 22 20 19 24 24 Si 1.86797 * 120.00033 * 185.09110 * 22 20 19 25 25 H 1.48500 * 109.47225 * 94.99148 * 24 22 20 26 26 H 1.48505 * 109.47111 * 214.99037 * 24 22 20 27 27 H 1.48506 * 109.47158 * 334.99008 * 24 22 20 28 28 C 1.47778 * 91.19614 * 23.86701 * 19 18 17 29 29 C 1.53468 * 106.25897 * 321.06250 * 17 16 15 30 30 H 1.09003 * 109.47160 * 299.99765 * 1 2 3 31 31 H 1.09000 * 109.47390 * 59.99841 * 1 2 3 32 32 H 1.08996 * 109.47528 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47546 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47368 * 300.00256 * 3 2 1 35 35 H 1.09001 * 109.47321 * 59.99856 * 3 2 1 36 36 H 1.09004 * 109.46482 * 300.00108 * 4 2 1 37 37 H 1.09000 * 109.47138 * 59.99624 * 4 2 1 38 38 H 1.08995 * 109.46811 * 180.02562 * 4 2 1 39 39 H 1.08993 * 117.51359 * 145.03639 * 7 5 2 40 40 H 1.09001 * 117.49176 * 0.02562 * 7 5 2 41 41 H 0.97006 * 119.99408 * 0.02562 * 12 10 8 42 42 H 1.08990 * 110.33144 * 98.82366 * 15 13 12 43 43 H 1.09003 * 110.32605 * 336.59418 * 15 13 12 44 44 H 1.09004 * 113.82289 * 333.60701 * 18 17 16 45 45 H 1.08997 * 113.82672 * 105.18544 * 18 17 16 46 46 H 0.97000 * 120.00023 * 179.97438 * 23 22 20 47 47 H 1.08998 * 113.82635 * 221.91581 * 28 19 18 48 48 H 1.09010 * 113.93070 * 90.36124 * 28 19 18 49 49 H 1.08996 * 110.57705 * 264.14905 * 29 17 16 50 50 H 1.08999 * 110.70096 * 141.32484 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 2.1267 -0.1060 2.1448 7 6 3.0742 -1.8322 1.0511 8 6 1.6357 -2.1852 1.4342 9 1 1.0060 -2.6344 0.6662 10 6 1.3884 -2.6664 2.8408 11 8 1.5105 -1.9012 3.7737 12 7 1.0315 -3.9471 3.0620 13 6 0.7906 -4.4147 4.4292 14 1 0.3200 -3.6320 5.0241 15 6 2.1126 -4.8730 5.0856 16 8 1.7569 -6.0303 5.8770 17 6 0.8026 -6.7482 5.0858 18 6 0.0613 -7.8791 5.7990 19 7 0.2063 -8.6262 4.5321 20 6 -0.4739 -9.6604 3.9465 21 1 -0.2267 -9.9688 2.9414 22 6 -1.4811 -10.3123 4.6446 23 7 -1.8509 -9.8737 5.8291 24 14 -2.3117 -11.8121 3.9028 25 1 -1.6519 -13.0433 4.4068 26 1 -3.7456 -11.8254 4.2889 27 1 -2.1980 -11.7598 2.4231 28 6 1.3780 -7.8110 4.1494 29 6 -0.0865 -5.6895 4.4196 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7216 -1.2490 39 1 3.8417 -1.9479 1.8162 40 1 3.3912 -2.0485 0.0308 41 1 0.9341 -4.5592 2.3157 42 1 2.5110 -4.0852 5.7248 43 1 2.8401 -5.1460 4.3212 44 1 0.6155 -8.3125 6.6315 45 1 -0.9711 -7.6379 6.0521 46 1 -2.5550 -10.3291 6.3168 47 1 1.3854 -7.5159 3.1002 48 1 2.3308 -8.2223 4.4830 49 1 -0.9960 -5.5330 4.9995 50 1 -0.3303 -5.9790 3.3974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053868816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:52 Heat of formation + Delta-G solvation = -28.486742 kcal Electronic energy + Delta-G solvation = -27822.004796 eV Core-core repulsion = 24043.800930 eV Total energy + Delta-G solvation = -3778.203866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78952 -40.96503 -39.21566 -37.81695 -35.69177 -34.75264 -34.13378 -31.57715 -29.89843 -28.23160 -28.09394 -27.54986 -26.75474 -25.52419 -23.99582 -23.77018 -22.28780 -21.32577 -20.45050 -19.28279 -18.79028 -18.48185 -17.53844 -17.20913 -16.63674 -16.55942 -16.26600 -16.02889 -15.72478 -15.58734 -14.98690 -14.79292 -14.59410 -14.32354 -14.19837 -14.05844 -13.74934 -13.48244 -13.27407 -13.15042 -12.88924 -12.83083 -12.71095 -12.58217 -12.51949 -12.44741 -12.12424 -12.04888 -11.92806 -11.89020 -11.85096 -11.63670 -11.45848 -11.18190 -10.93278 -10.89625 -10.78734 -10.58597 -10.13480 -8.98414 -7.94394 -5.28382 1.46504 1.46572 1.49015 1.57648 2.02594 2.43661 2.85717 2.94213 3.21859 3.34941 3.51569 3.59505 3.64430 3.70356 3.78343 3.85713 4.01146 4.07763 4.16477 4.19070 4.29048 4.34220 4.56903 4.62926 4.63672 4.73725 4.78047 4.79625 4.83996 4.85354 4.87230 4.95054 4.97366 4.98703 5.02708 5.11321 5.11796 5.15014 5.18709 5.22888 5.25621 5.42173 5.42749 5.46554 5.51855 5.57730 5.84692 5.99804 6.51208 6.86882 7.20654 7.56591 8.50273 9.23970 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002496 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.015884 B =11216.819849 C =12003.978188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.138 4.138 4 C -0.146 4.146 5 C -0.109 4.109 6 H 0.092 0.908 7 C -0.138 4.138 8 C -0.190 4.190 9 H 0.145 0.855 10 C 0.541 3.459 11 O -0.582 6.582 12 N -0.704 5.704 13 C 0.125 3.875 14 H 0.092 0.908 15 C 0.040 3.960 16 O -0.378 6.378 17 C 0.070 3.930 18 C 0.176 3.824 19 N -0.628 5.628 20 C -0.233 4.233 21 H 0.092 0.908 22 C -0.066 4.066 23 N -0.953 5.953 24 Si 0.980 3.020 25 H -0.291 1.291 26 H -0.295 1.295 27 H -0.261 1.261 28 C 0.111 3.889 29 C -0.110 4.110 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.416 0.584 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.012 0.988 45 H 0.051 0.949 46 H 0.250 0.750 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.080 0.920 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.560 20.655 -15.726 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 C -0.196 4.196 4 C -0.203 4.203 5 C -0.128 4.128 6 H 0.111 0.889 7 C -0.175 4.175 8 C -0.211 4.211 9 H 0.162 0.838 10 C 0.330 3.670 11 O -0.462 6.462 12 N -0.356 5.356 13 C 0.019 3.981 14 H 0.110 0.890 15 C -0.038 4.038 16 O -0.295 6.295 17 C 0.030 3.970 18 C 0.050 3.950 19 N -0.356 5.356 20 C -0.361 4.361 21 H 0.110 0.890 22 C -0.259 4.259 23 N -0.601 5.601 24 Si 0.808 3.192 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.186 1.186 28 C -0.014 4.014 29 C -0.148 4.148 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.152 0.848 41 H 0.254 0.746 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.058 0.942 49 H 0.099 0.901 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.498 20.894 -14.878 27.021 hybrid contribution -0.744 -1.452 0.212 1.645 sum 7.754 19.442 -14.666 25.558 Atomic orbital electron populations 1.21870 0.94437 1.01940 1.01642 1.20105 0.95346 0.95485 0.92789 1.21834 1.01326 0.94524 1.01881 1.22033 1.01632 1.00442 0.96186 1.22432 1.01805 0.88874 0.99704 0.88936 1.23316 0.89435 1.00545 1.04247 1.22279 1.02965 1.01784 0.94023 0.83779 1.20272 0.74770 0.81215 0.90750 1.90678 1.53294 1.55909 1.46326 1.45918 1.69751 1.11511 1.08464 1.22173 0.95497 0.96187 0.84194 0.89024 1.23889 0.96416 0.87951 0.95557 1.89009 1.61104 1.37549 1.41847 1.23783 0.89306 0.91392 0.92565 1.21968 0.97113 0.86858 0.89050 1.46016 1.30508 1.39301 1.19790 1.19405 1.12019 1.06905 0.97743 0.89009 1.25710 1.00819 1.02254 0.97136 1.70020 1.32623 1.42448 1.15029 0.85041 0.76851 0.78978 0.78351 1.21804 1.22179 1.18558 1.23026 0.90669 0.89412 0.98335 1.22535 0.97802 0.91665 1.02806 0.93768 0.91589 0.92611 0.92154 0.91564 0.93388 0.92010 0.91848 0.91432 0.89239 0.84824 0.74643 0.88589 0.90888 0.96979 0.93090 0.94122 0.90799 0.94188 0.90139 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.31 71.98 0.60 -1.21 16 2 C -0.04 -0.44 0.88 -52.18 -0.05 -0.48 16 3 C -0.14 -1.54 8.46 71.98 0.61 -0.93 16 4 C -0.15 -1.24 7.07 71.98 0.51 -0.73 16 5 C -0.11 -1.71 4.66 -10.77 -0.05 -1.76 16 6 H 0.09 1.93 7.64 -2.39 -0.02 1.92 16 7 C -0.14 -1.81 9.27 30.62 0.28 -1.52 16 8 C -0.19 -2.99 5.04 -11.54 -0.06 -3.05 16 9 H 0.14 1.66 7.07 -2.39 -0.02 1.64 16 10 C 0.54 12.53 7.61 87.66 0.67 13.19 16 11 O -0.58 -18.24 15.97 -3.02 -0.05 -18.28 16 12 N -0.70 -15.04 5.12 -437.25 -2.24 -17.28 16 13 C 0.13 3.38 3.42 46.11 0.16 3.54 16 14 H 0.09 2.68 7.68 -2.39 -0.02 2.66 16 15 C 0.04 1.13 7.37 72.51 0.53 1.67 16 16 O -0.38 -13.91 11.44 -148.98 -1.70 -15.61 16 17 C 0.07 2.69 1.29 -10.66 -0.01 2.67 16 18 C 0.18 8.72 6.96 86.09 0.60 9.32 16 19 N -0.63 -31.82 3.70 -741.09 -2.74 -34.56 16 20 C -0.23 -12.71 10.69 84.03 0.90 -11.81 16 21 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 22 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 23 N -0.95 -57.42 11.52 21.65 0.25 -57.17 16 24 Si 0.98 44.83 29.56 68.60 2.03 46.86 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 C 0.11 4.40 8.42 86.09 0.73 5.12 16 29 C -0.11 -3.46 6.23 31.34 0.20 -3.26 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.71 7.29 -2.39 -0.02 0.69 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.48 7.07 -2.38 -0.02 0.47 16 37 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 0.49 6.97 -2.39 -0.02 0.48 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.13 1.13 5.85 -2.39 -0.01 1.11 16 41 H 0.42 6.88 8.31 -92.70 -0.77 6.11 16 42 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 44 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 2.75 7.30 -2.39 -0.02 2.73 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 48 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 50 H 0.10 2.85 7.41 -2.39 -0.02 2.83 16 Total: -1.00 -70.19 394.08 1.78 -68.41 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.15 Total: 20.11 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.08 Total: 7.52 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -4.73 Total: -109.01 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.75 Total: -33.90 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.19 1.78 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053868816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.927 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds