Wall clock time and date at job start Tue Mar 31 2020 13:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 N 1.46507 * 109.46810 * 119.99755 * 2 1 3 5 5 C 1.34771 * 120.00114 * 301.02179 * 4 2 1 6 6 O 1.21290 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00249 * 180.02562 * 5 4 2 8 8 N 1.46902 * 109.47311 * 177.30824 * 7 5 4 9 9 C 1.46897 * 111.00234 * 72.41999 * 8 7 5 10 10 C 1.50706 * 109.47094 * 190.00389 * 9 8 7 11 11 H 1.07993 * 120.00015 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99715 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00698 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99668 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47123 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46845 * 120.00294 * 14 12 10 17 17 H 1.48501 * 109.47276 * 239.99652 * 14 12 10 18 18 C 1.46899 * 110.99922 * 196.37553 * 8 7 5 19 19 C 1.50701 * 109.47359 * 76.10761 * 18 8 7 20 20 C 1.34509 * 125.79015 * 84.71485 * 19 18 8 21 21 C 1.41379 * 106.84045 * 179.97438 * 20 19 18 22 22 C 1.34512 * 106.84279 * 0.02562 * 21 20 19 23 23 O 1.34300 * 108.41872 * 359.73279 * 22 21 20 24 24 C 1.46504 * 119.99827 * 121.02635 * 4 2 1 25 25 C 1.52996 * 109.46993 * 304.44790 * 24 4 2 26 26 C 1.52999 * 109.47330 * 64.44961 * 24 4 2 27 27 H 1.09002 * 109.47287 * 306.74163 * 1 2 3 28 28 H 1.09000 * 109.46769 * 66.74146 * 1 2 3 29 29 H 1.08996 * 109.47270 * 186.73884 * 1 2 3 30 30 H 1.08998 * 109.47370 * 239.99547 * 2 1 3 31 31 H 1.08996 * 109.47435 * 64.55877 * 3 2 1 32 32 H 1.09005 * 109.46990 * 184.55774 * 3 2 1 33 33 H 1.09005 * 109.46739 * 304.55234 * 3 2 1 34 34 H 1.08997 * 109.47298 * 57.30456 * 7 5 4 35 35 H 1.09001 * 109.47050 * 297.30603 * 7 5 4 36 36 H 1.09001 * 109.46928 * 309.99871 * 9 8 7 37 37 H 1.08996 * 109.47131 * 69.99650 * 9 8 7 38 38 H 0.96992 * 120.00673 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47262 * 316.10490 * 18 8 7 40 40 H 1.09000 * 109.46826 * 196.11078 * 18 8 7 41 41 H 1.08000 * 126.57783 * 0.03626 * 20 19 18 42 42 H 1.08004 * 126.58211 * 179.97438 * 21 20 19 43 43 H 1.08000 * 125.79406 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46888 * 184.45135 * 24 4 2 45 45 H 1.09004 * 109.47437 * 65.36580 * 25 24 4 46 46 H 1.08999 * 109.47213 * 185.36861 * 25 24 4 47 47 H 1.09004 * 109.46911 * 305.36603 * 25 24 4 48 48 H 1.08998 * 109.47390 * 64.72844 * 26 24 4 49 49 H 1.08994 * 109.46988 * 184.73111 * 26 24 4 50 50 H 1.09003 * 109.47069 * 304.73199 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6757 -0.2423 2.4202 6 8 0.9628 0.7327 2.5313 7 6 2.1784 -0.9522 3.6507 8 7 1.7218 -0.2368 4.8498 9 6 0.2815 -0.4316 5.0625 10 6 -0.1975 0.5027 6.1437 11 1 0.4986 1.1736 6.6249 12 6 -1.5243 0.5007 6.5184 13 7 -2.3722 -0.3159 5.9321 14 14 -2.1178 1.6583 7.8591 15 1 -0.9763 2.4685 8.3546 16 1 -3.1618 2.5595 7.3085 17 1 -2.6875 0.8674 8.9795 18 6 2.4892 -0.6488 6.0327 19 6 3.8511 -0.0047 5.9975 20 6 4.1495 1.2293 6.4417 21 6 5.5317 1.4228 6.2163 22 6 5.9953 0.2956 5.6472 23 8 4.9741 -0.5677 5.5221 24 6 2.8789 -1.8685 1.0620 25 6 2.1802 -2.9140 0.1905 26 6 4.2016 -1.4620 0.4093 27 1 -0.3634 0.6148 0.8235 28 1 -0.3633 0.4058 -0.9442 29 1 -0.3633 -1.0205 0.1206 30 1 1.8933 -0.5139 -0.8899 31 1 1.7449 1.9322 0.9280 32 1 3.1270 1.4435 -0.0817 33 1 1.6116 1.9793 -0.8465 34 1 3.2680 -0.9779 3.6358 35 1 1.7912 -1.9710 3.6660 36 1 -0.2543 -0.2210 4.1369 37 1 0.0948 -1.4623 5.3639 38 1 -3.3056 -0.3170 6.1955 39 1 2.6000 -1.7332 6.0344 40 1 1.9625 -0.3361 6.9344 41 1 3.4647 1.9363 6.8863 42 1 6.1052 2.3064 6.4544 43 1 7.0165 0.1136 5.3466 44 1 3.0747 -2.2897 2.0481 45 1 2.0699 -2.5275 -0.8227 46 1 2.7767 -3.8260 0.1685 47 1 1.1961 -3.1334 0.6048 48 1 4.7386 -0.7812 1.0697 49 1 4.8078 -2.3505 0.2327 50 1 4.0007 -0.9647 -0.5397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:10 Heat of formation + Delta-G solvation = -9.795443 kcal Electronic energy + Delta-G solvation = -29273.196732 eV Core-core repulsion = 25495.803381 eV Total energy + Delta-G solvation = -3777.393350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15229 -40.01106 -37.01532 -35.87399 -33.67181 -32.63755 -32.47612 -30.68745 -30.01960 -27.88146 -27.52315 -26.66571 -26.22217 -24.10025 -22.15270 -21.75834 -21.34118 -20.82371 -19.79401 -17.95526 -17.11745 -16.84354 -16.47248 -15.73775 -15.63004 -15.07832 -14.60561 -14.51601 -14.11348 -13.93605 -13.82744 -13.53047 -13.44804 -12.92968 -12.90423 -12.70101 -12.48981 -12.32772 -12.24058 -12.17940 -11.93815 -11.88767 -11.61887 -11.53807 -11.31221 -11.19696 -11.01420 -10.89565 -10.87749 -10.83155 -10.57689 -10.48814 -9.90061 -9.53137 -9.24061 -8.80651 -8.40411 -8.32465 -8.05932 -7.32210 -5.96326 -3.96196 2.10036 3.01630 3.21186 3.24053 3.35559 3.38045 3.43450 3.48095 4.47714 4.65222 4.79947 4.98663 5.00008 5.11722 5.14923 5.35295 5.36424 5.38945 5.40454 5.42883 5.43294 5.46548 5.52743 5.66932 5.72132 5.72765 5.81050 5.85287 5.93180 5.95430 6.03630 6.08351 6.14869 6.16794 6.17963 6.28081 6.40433 6.51713 6.54868 6.62378 6.91243 6.98324 7.20832 7.28572 7.57199 7.73767 7.86143 8.13278 8.17168 8.52557 8.84917 9.09744 9.66649 11.14918 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.005422 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.309762 B = 5163.348947 C = 7347.073075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.617 5.617 5 C 0.518 3.482 6 O -0.491 6.491 7 C 0.036 3.964 8 N -0.512 5.512 9 C 0.194 3.806 10 C -0.501 4.501 11 H 0.064 0.936 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.138 3.862 19 C 0.010 3.990 20 C -0.197 4.197 21 C -0.211 4.211 22 C -0.062 4.062 23 O -0.185 6.185 24 C 0.129 3.871 25 C -0.162 4.162 26 C -0.161 4.161 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.051 0.949 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.039 0.961 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.194 0.806 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.096 -4.360 -10.341 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.048 3.952 3 C -0.226 4.226 4 N -0.354 5.354 5 C 0.305 3.695 6 O -0.362 6.362 7 C -0.095 4.095 8 N -0.237 5.237 9 C 0.070 3.930 10 C -0.540 4.540 11 H 0.082 0.918 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.212 1.212 18 C 0.010 3.990 19 C -0.040 4.040 20 C -0.217 4.217 21 C -0.231 4.231 22 C -0.130 4.130 23 O -0.081 6.081 24 C 0.025 3.975 25 C -0.220 4.220 26 C -0.220 4.220 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.005 0.995 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.211 0.789 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.567 -3.650 -10.452 18.297 hybrid contribution -0.331 -0.075 0.720 0.796 sum 14.237 -3.725 -9.732 17.643 Atomic orbital electron populations 1.22215 0.94922 1.02599 1.02924 1.20806 0.94473 0.92875 0.87072 1.22208 1.00206 0.96437 1.03777 1.48257 1.51449 1.29967 1.05738 1.20596 0.80460 0.84819 0.83649 1.90696 1.34555 1.25429 1.85537 1.21987 1.00287 0.95797 0.91452 1.61805 1.07577 1.55219 0.99127 1.19877 0.79429 0.94877 0.98785 1.21123 0.93813 1.20485 1.18594 0.91832 1.24941 0.96714 0.95861 0.96917 1.69963 1.03623 1.37851 1.42311 0.86481 0.78834 0.80827 0.81512 1.19650 1.21081 1.21227 1.20577 0.85123 0.96071 0.97246 1.22838 0.87195 0.94251 0.99734 1.21576 0.95622 0.97362 1.07128 1.21802 0.95693 0.99743 1.05837 1.23797 0.92551 0.90133 1.06521 1.83983 1.16764 1.42143 1.65240 1.21122 0.89937 0.85952 1.00519 1.22180 1.01342 0.98385 1.00113 1.22184 0.96806 1.01748 1.01232 0.89842 0.92596 0.92919 0.90517 0.89998 0.93305 0.92404 0.89622 0.92915 0.93081 0.99453 0.93091 0.94316 0.86056 0.83481 0.84114 0.78916 0.89132 0.92332 0.91674 0.91921 0.92250 0.91757 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.99 37.15 0.33 -2.13 16 2 C 0.15 2.01 2.36 -67.93 -0.16 1.85 16 3 C -0.17 -2.31 9.19 37.16 0.34 -1.97 16 4 N -0.62 -8.90 2.31 -158.59 -0.37 -9.27 16 5 C 0.52 9.73 6.78 -10.99 -0.07 9.66 16 6 O -0.49 -11.30 11.08 5.55 0.06 -11.24 16 7 C 0.04 0.67 3.60 -4.98 -0.02 0.65 16 8 N -0.51 -11.17 4.05 -238.96 -0.97 -12.14 16 9 C 0.19 5.09 4.34 -4.97 -0.02 5.07 16 10 C -0.50 -14.15 8.23 -34.44 -0.28 -14.43 16 11 H 0.06 1.77 7.32 -52.49 -0.38 1.39 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 14 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 C 0.14 2.65 5.34 -4.98 -0.03 2.63 16 19 C 0.01 0.18 6.16 -35.63 -0.22 -0.04 16 20 C -0.20 -3.41 10.81 -39.71 -0.43 -3.84 16 21 C -0.21 -3.04 10.91 -39.70 -0.43 -3.48 16 22 C -0.06 -0.83 12.09 29.42 0.36 -0.47 16 23 O -0.18 -2.94 10.25 5.71 0.06 -2.88 16 24 C 0.13 1.43 3.08 -67.93 -0.21 1.22 16 25 C -0.16 -1.53 9.02 37.16 0.33 -1.20 16 26 C -0.16 -1.50 9.31 37.16 0.35 -1.15 16 27 H 0.08 1.55 6.31 -51.93 -0.33 1.22 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.83 6.12 -51.93 -0.32 0.51 16 31 H 0.08 1.43 6.13 -51.93 -0.32 1.11 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.42 6.62 -51.93 -0.34 1.08 16 35 H 0.05 0.92 7.73 -51.93 -0.40 0.52 16 36 H 0.05 1.50 6.31 -51.93 -0.33 1.17 16 37 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 39 H 0.04 0.69 7.99 -51.93 -0.42 0.27 16 40 H 0.12 2.49 6.58 -51.93 -0.34 2.15 16 41 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 42 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.09 1.02 5.79 -51.93 -0.30 0.72 16 45 H 0.06 0.51 6.98 -51.93 -0.36 0.15 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.52 7.21 -51.93 -0.37 0.15 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -32.95 394.32 -8.24 -41.19 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.42 Total: 3.78 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.26 Total: -6.11 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.60 Total: -47.67 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.12 Total: -14.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.95 -8.24 -41.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.393 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds