Wall clock time and date at job start Tue Mar 31 2020 13:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 N 1.46507 * 109.46810 * 119.99755 * 2 1 3 5 5 C 1.34771 * 120.00114 * 301.02179 * 4 2 1 6 6 O 1.21290 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00249 * 180.02562 * 5 4 2 8 8 N 1.46902 * 109.47311 * 177.30824 * 7 5 4 9 9 C 1.46897 * 111.00234 * 72.41999 * 8 7 5 10 10 C 1.50706 * 109.47094 * 190.00389 * 9 8 7 11 11 H 1.07993 * 120.00015 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99715 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00698 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99668 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47123 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46845 * 120.00294 * 14 12 10 17 17 H 1.48501 * 109.47276 * 239.99652 * 14 12 10 18 18 C 1.46899 * 110.99922 * 196.37553 * 8 7 5 19 19 C 1.50701 * 109.47359 * 76.10761 * 18 8 7 20 20 C 1.34509 * 125.79015 * 84.71485 * 19 18 8 21 21 C 1.41379 * 106.84045 * 179.97438 * 20 19 18 22 22 C 1.34512 * 106.84279 * 0.02562 * 21 20 19 23 23 O 1.34300 * 108.41872 * 359.73279 * 22 21 20 24 24 C 1.46504 * 119.99827 * 121.02635 * 4 2 1 25 25 C 1.52996 * 109.46993 * 304.44790 * 24 4 2 26 26 C 1.52999 * 109.47330 * 64.44961 * 24 4 2 27 27 H 1.09002 * 109.47287 * 306.74163 * 1 2 3 28 28 H 1.09000 * 109.46769 * 66.74146 * 1 2 3 29 29 H 1.08996 * 109.47270 * 186.73884 * 1 2 3 30 30 H 1.08998 * 109.47370 * 239.99547 * 2 1 3 31 31 H 1.08996 * 109.47435 * 64.55877 * 3 2 1 32 32 H 1.09005 * 109.46990 * 184.55774 * 3 2 1 33 33 H 1.09005 * 109.46739 * 304.55234 * 3 2 1 34 34 H 1.08997 * 109.47298 * 57.30456 * 7 5 4 35 35 H 1.09001 * 109.47050 * 297.30603 * 7 5 4 36 36 H 1.09001 * 109.46928 * 309.99871 * 9 8 7 37 37 H 1.08996 * 109.47131 * 69.99650 * 9 8 7 38 38 H 0.96992 * 120.00673 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47262 * 316.10490 * 18 8 7 40 40 H 1.09000 * 109.46826 * 196.11078 * 18 8 7 41 41 H 1.08000 * 126.57783 * 0.03626 * 20 19 18 42 42 H 1.08004 * 126.58211 * 179.97438 * 21 20 19 43 43 H 1.08000 * 125.79406 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46888 * 184.45135 * 24 4 2 45 45 H 1.09004 * 109.47437 * 65.36580 * 25 24 4 46 46 H 1.08999 * 109.47213 * 185.36861 * 25 24 4 47 47 H 1.09004 * 109.46911 * 305.36603 * 25 24 4 48 48 H 1.08998 * 109.47390 * 64.72844 * 26 24 4 49 49 H 1.08994 * 109.46988 * 184.73111 * 26 24 4 50 50 H 1.09003 * 109.47069 * 304.73199 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6757 -0.2423 2.4202 6 8 0.9628 0.7327 2.5313 7 6 2.1784 -0.9522 3.6507 8 7 1.7218 -0.2368 4.8498 9 6 0.2815 -0.4316 5.0625 10 6 -0.1975 0.5027 6.1437 11 1 0.4986 1.1736 6.6249 12 6 -1.5243 0.5007 6.5184 13 7 -2.3722 -0.3159 5.9321 14 14 -2.1178 1.6583 7.8591 15 1 -0.9763 2.4685 8.3546 16 1 -3.1618 2.5595 7.3085 17 1 -2.6875 0.8674 8.9795 18 6 2.4892 -0.6488 6.0327 19 6 3.8511 -0.0047 5.9975 20 6 4.1495 1.2293 6.4417 21 6 5.5317 1.4228 6.2163 22 6 5.9953 0.2956 5.6472 23 8 4.9741 -0.5677 5.5221 24 6 2.8789 -1.8685 1.0620 25 6 2.1802 -2.9140 0.1905 26 6 4.2016 -1.4620 0.4093 27 1 -0.3634 0.6148 0.8235 28 1 -0.3633 0.4058 -0.9442 29 1 -0.3633 -1.0205 0.1206 30 1 1.8933 -0.5139 -0.8899 31 1 1.7449 1.9322 0.9280 32 1 3.1270 1.4435 -0.0817 33 1 1.6116 1.9793 -0.8465 34 1 3.2680 -0.9779 3.6358 35 1 1.7912 -1.9710 3.6660 36 1 -0.2543 -0.2210 4.1369 37 1 0.0948 -1.4623 5.3639 38 1 -3.3056 -0.3170 6.1955 39 1 2.6000 -1.7332 6.0344 40 1 1.9625 -0.3361 6.9344 41 1 3.4647 1.9363 6.8863 42 1 6.1052 2.3064 6.4544 43 1 7.0165 0.1136 5.3466 44 1 3.0747 -2.2897 2.0481 45 1 2.0699 -2.5275 -0.8227 46 1 2.7767 -3.8260 0.1685 47 1 1.1961 -3.1334 0.6048 48 1 4.7386 -0.7812 1.0697 49 1 4.8078 -2.3505 0.2327 50 1 4.0007 -0.9647 -0.5397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:08 Heat of formation + Delta-G solvation = -30.450131 kcal Electronic energy + Delta-G solvation = -29274.092386 eV Core-core repulsion = 25495.803381 eV Total energy + Delta-G solvation = -3778.289005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.38072 -41.33213 -38.51317 -37.32975 -34.87983 -34.57456 -33.81313 -31.92505 -31.40707 -29.68890 -28.43458 -27.77821 -27.64797 -25.86843 -23.70207 -22.75527 -22.63153 -22.29066 -21.14285 -19.29372 -18.58151 -18.31814 -18.00113 -17.15155 -17.00281 -16.59512 -16.24432 -15.84422 -15.63437 -15.32209 -15.02978 -14.79615 -14.62292 -14.34250 -14.10984 -13.85144 -13.81241 -13.68217 -13.63202 -13.49847 -13.32717 -13.02424 -12.94242 -12.83914 -12.69630 -12.56502 -12.51013 -12.45020 -12.25921 -12.05888 -11.97806 -11.90557 -11.75465 -11.31223 -10.75989 -10.61164 -10.30386 -9.56997 -9.33624 -9.05983 -8.18648 -6.26500 0.87191 1.38284 1.40556 1.53248 1.78165 1.80044 2.02133 2.15772 2.40903 3.14772 3.31781 3.62521 3.85227 3.87490 4.07625 4.10274 4.15611 4.22094 4.24107 4.28273 4.31818 4.35429 4.40847 4.51528 4.60487 4.70553 4.74479 4.80498 4.89368 4.93546 4.95883 4.98576 5.00011 5.04382 5.11453 5.15382 5.23861 5.28500 5.31486 5.38196 5.40545 5.40983 5.63106 5.70186 5.86936 6.03788 6.23271 6.31653 6.43971 6.62862 6.86827 7.41127 7.45033 8.93193 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.005422 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.309762 B = 5163.348947 C = 7347.073075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.162 4.162 4 N -0.607 5.607 5 C 0.510 3.490 6 O -0.544 6.544 7 C 0.041 3.959 8 N -0.526 5.526 9 C 0.218 3.782 10 C -0.515 4.515 11 H 0.060 0.940 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.143 3.857 19 C -0.012 4.012 20 C -0.211 4.211 21 C -0.226 4.226 22 C -0.038 4.038 23 O -0.188 6.188 24 C 0.118 3.882 25 C -0.157 4.157 26 C -0.154 4.154 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.013 0.987 37 H -0.035 1.035 38 H 0.263 0.737 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.133 0.867 42 H 0.167 0.833 43 H 0.245 0.755 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.047 0.953 49 H 0.090 0.910 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.224 -4.889 -11.617 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 C -0.220 4.220 4 N -0.342 5.342 5 C 0.298 3.702 6 O -0.420 6.420 7 C -0.090 4.090 8 N -0.251 5.251 9 C 0.093 3.907 10 C -0.553 4.553 11 H 0.078 0.922 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.016 3.984 19 C -0.063 4.063 20 C -0.232 4.232 21 C -0.245 4.245 22 C -0.105 4.105 23 O -0.085 6.085 24 C 0.016 3.984 25 C -0.215 4.215 26 C -0.212 4.212 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.031 0.969 37 H -0.017 1.017 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.151 0.849 42 H 0.185 0.815 43 H 0.261 0.739 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.744 -4.216 -11.752 21.697 hybrid contribution -1.183 0.056 1.041 1.577 sum 16.562 -4.160 -10.711 20.157 Atomic orbital electron populations 1.22149 0.96270 1.01431 1.02341 1.20992 0.93444 0.93182 0.87741 1.22125 1.01126 0.96451 1.02276 1.48317 1.50794 1.30452 1.04664 1.20749 0.80072 0.84306 0.85113 1.90686 1.37010 1.27819 1.86511 1.22012 1.01329 0.95574 0.90096 1.61627 1.05393 1.56742 1.01292 1.19353 0.82204 0.93004 0.96176 1.21415 0.94195 1.20657 1.19045 0.92177 1.25843 0.96837 0.97483 0.99328 1.70092 1.04004 1.39483 1.43908 0.85395 0.78267 0.78665 0.78660 1.18797 1.20970 1.19873 1.20348 0.85920 0.96903 0.95269 1.22312 0.87181 0.94619 1.02143 1.21741 0.97402 0.97036 1.06981 1.22097 0.94273 1.01516 1.06588 1.24789 0.93449 0.88714 1.03549 1.83969 1.16704 1.42671 1.65150 1.21466 0.90684 0.85021 1.01275 1.22144 1.00449 0.98838 1.00022 1.22125 0.95386 1.02737 1.00916 0.94556 0.89948 0.93347 0.86557 0.94377 0.91909 0.90427 0.87450 0.92244 0.96916 1.01693 0.92859 0.93021 0.88263 0.84925 0.81510 0.73880 0.89538 0.91069 0.89160 0.93967 0.93393 0.89137 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 8.99 71.98 0.65 -4.25 16 2 C 0.15 3.81 2.36 44.99 0.11 3.91 16 3 C -0.16 -4.35 9.19 71.98 0.66 -3.69 16 4 N -0.61 -17.35 2.31 -774.03 -1.79 -19.14 16 5 C 0.51 20.06 6.78 87.66 0.59 20.65 16 6 O -0.54 -27.02 11.08 -3.06 -0.03 -27.05 16 7 C 0.04 1.55 3.60 85.56 0.31 1.86 16 8 N -0.53 -24.20 4.05 -909.94 -3.69 -27.89 16 9 C 0.22 12.24 4.34 85.56 0.37 12.61 16 10 C -0.51 -30.59 8.23 25.60 0.21 -30.38 16 11 H 0.06 3.53 7.32 -2.91 -0.02 3.51 16 12 C 0.00 0.16 5.46 84.65 0.46 0.63 16 13 N -0.93 -58.56 13.29 21.45 0.28 -58.27 16 14 Si 0.97 46.50 29.54 68.60 2.03 48.53 16 15 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 C 0.14 5.75 5.34 85.56 0.46 6.20 16 19 C -0.01 -0.44 6.16 24.83 0.15 -0.29 16 20 C -0.21 -7.34 10.81 22.19 0.24 -7.10 16 21 C -0.23 -5.99 10.91 22.19 0.24 -5.74 16 22 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 23 O -0.19 -5.61 10.25 -2.47 -0.03 -5.64 16 24 C 0.12 2.38 3.08 44.99 0.14 2.52 16 25 C -0.16 -2.55 9.02 71.98 0.65 -1.90 16 26 C -0.15 -2.30 9.31 71.98 0.67 -1.63 16 27 H 0.04 1.44 6.31 -2.39 -0.02 1.42 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 2.11 6.12 -2.39 -0.01 2.10 16 31 H 0.04 1.38 6.13 -2.39 -0.01 1.37 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.11 3.53 6.62 -2.39 -0.02 3.52 16 35 H 0.06 2.15 7.73 -2.39 -0.02 2.13 16 36 H 0.01 0.81 6.31 -2.39 -0.02 0.80 16 37 H -0.03 -2.03 8.12 -2.39 -0.02 -2.05 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.05 1.89 7.99 -2.38 -0.02 1.87 16 40 H 0.10 4.36 6.58 -2.39 -0.02 4.34 16 41 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 42 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.25 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.09 1.81 5.79 -2.39 -0.01 1.80 16 45 H 0.07 0.98 6.98 -2.38 -0.02 0.97 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.91 7.21 -2.39 -0.02 0.89 16 Total: -1.00 -78.15 394.32 4.40 -73.75 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.91 Total: 22.37 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 6.72 Total: -6.66 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.19 Total: -105.30 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.06 Total: -32.69 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -78.15 4.40 -73.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.300 kcal (2) G-P(sol) polarization free energy of solvation -78.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds