Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 H 1.09000 * 109.47093 * 55.00558 * 3 2 1 5 5 C 1.53006 * 109.47168 * 175.00084 * 3 2 1 6 6 N 1.46500 * 109.47635 * 295.00209 * 3 2 1 7 7 C 1.46924 * 124.37608 * 119.99472 * 6 3 2 8 8 C 1.54802 * 105.54033 * 196.71877 * 7 6 3 9 9 C 1.53208 * 101.38823 * 335.83206 * 8 7 6 10 10 C 1.53705 * 111.54126 * 145.85133 * 9 8 7 11 11 C 1.54589 * 102.78264 * 86.21096 * 10 9 8 12 12 N 1.47135 * 107.32944 * 20.88010 * 11 10 9 13 13 C 1.34777 * 125.60954 * 180.91781 * 12 11 10 14 14 O 1.21283 * 120.00387 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99735 * 0.02793 * 13 12 11 16 16 C 1.53008 * 109.46852 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46847 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00138 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99722 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 119.99815 * 21 19 17 24 24 H 1.48498 * 109.47295 * 240.00422 * 21 19 17 25 25 C 1.47707 * 108.78398 * 1.18632 * 12 11 10 26 26 C 1.34885 * 124.37679 * 299.98089 * 6 3 2 27 27 O 1.21280 * 125.22049 * 358.78607 * 26 6 3 28 28 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46583 * 299.99251 * 1 2 3 30 30 H 1.08992 * 109.46962 * 59.99772 * 1 2 3 31 31 H 1.09007 * 109.46829 * 240.00633 * 2 1 3 32 32 H 1.08993 * 109.47348 * 120.00602 * 2 1 3 33 33 H 1.08993 * 109.46887 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46584 * 300.00534 * 5 3 2 35 35 H 1.09000 * 109.46726 * 60.00249 * 5 3 2 36 36 H 1.09000 * 110.23790 * 315.73804 * 7 6 3 37 37 H 1.09001 * 110.23175 * 77.62127 * 7 6 3 38 38 H 1.08997 * 111.03963 * 217.80129 * 8 7 6 39 39 H 1.08999 * 111.04069 * 93.85915 * 8 7 6 40 40 H 1.09001 * 110.74623 * 327.88683 * 10 9 8 41 41 H 1.08997 * 110.90858 * 204.60321 * 10 9 8 42 42 H 1.09001 * 109.87111 * 261.44682 * 11 10 9 43 43 H 1.08995 * 109.87518 * 140.31648 * 11 10 9 44 44 H 1.09000 * 109.47333 * 60.00080 * 15 13 12 45 45 H 1.08994 * 109.47300 * 299.99836 * 15 13 12 46 46 H 1.08996 * 109.46961 * 60.00610 * 16 15 13 47 47 H 1.08994 * 109.47402 * 300.00224 * 16 15 13 48 48 H 0.97000 * 119.99651 * 0.02562 * 20 19 17 49 49 H 1.08999 * 110.39117 * 95.95328 * 25 12 11 50 50 H 1.09005 * 110.39079 * 218.34089 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 1.6525 2.0976 -1.2517 7 6 0.8067 3.2961 -1.3335 8 6 0.3232 3.3632 -2.8025 9 6 1.4211 2.5701 -3.5188 10 6 0.8590 1.7773 -4.7097 11 6 0.9014 2.8104 -5.8589 12 7 1.8763 3.8458 -5.4816 13 6 2.1886 4.9337 -6.2135 14 8 3.0111 5.7250 -5.8033 15 6 1.5155 5.1669 -7.5415 16 6 2.0451 6.4617 -8.1612 17 6 1.3715 6.6953 -9.4890 18 1 0.6387 5.9909 -9.8541 19 6 1.6908 7.8081 -10.2376 20 7 2.5835 8.6656 -9.7932 21 14 0.8565 8.0973 -11.8837 22 1 -0.1005 6.9944 -12.1541 23 1 0.1248 9.3891 -11.8477 24 1 1.8813 8.1385 -12.9576 25 6 2.4614 3.4937 -4.1719 26 6 2.0262 1.6785 -2.4781 27 8 2.7424 0.7260 -2.7037 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9281 2.4720 0.1262 34 1 3.8532 0.9569 1.0571 35 1 3.9995 0.9053 -0.7162 36 1 -0.0453 3.2030 -0.6601 37 1 1.3872 4.1848 -1.0855 38 1 0.2900 4.3934 -3.1569 39 1 -0.6470 2.8800 -2.9176 40 1 -0.1651 1.4599 -4.5133 41 1 1.4907 0.9191 -4.9385 42 1 -0.0832 3.2590 -5.9904 43 1 1.2158 2.3245 -6.7825 44 1 0.4387 5.2492 -7.3936 45 1 1.7279 4.3312 -8.2082 46 1 3.1218 6.3799 -8.3091 47 1 1.8324 7.2972 -7.4944 48 1 3.0175 8.5149 -8.9389 49 1 3.4071 2.9688 -4.3071 50 1 2.6060 4.3891 -3.5674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269991736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = -86.370343 kcal Electronic energy + Delta-G solvation = -28267.649613 eV Core-core repulsion = 24486.935726 eV Total energy + Delta-G solvation = -3780.713887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60871 -39.42996 -37.49304 -36.84202 -35.10862 -33.79438 -32.01528 -30.86939 -30.45090 -29.39739 -28.54874 -25.98887 -24.51461 -24.16731 -23.15139 -22.40196 -21.62178 -20.76836 -19.12435 -18.69880 -17.24893 -16.83327 -16.46183 -16.09044 -16.01707 -15.64857 -14.97864 -14.60796 -14.45145 -14.28551 -14.03786 -13.74299 -13.70394 -13.65325 -13.38542 -13.29800 -12.89367 -12.70721 -12.56816 -12.27788 -12.12658 -12.06562 -11.93164 -11.74113 -11.54387 -11.47136 -11.40056 -11.30884 -11.19096 -10.93174 -10.80110 -10.11712 -10.10273 -9.96925 -9.83465 -9.30926 -9.01393 -8.52725 -8.51433 -8.27355 -6.31371 -4.01470 2.24089 2.57153 3.09979 3.17544 3.45613 3.50576 3.62757 3.90162 3.99696 4.16083 4.35425 4.50227 4.56008 4.57619 4.63180 4.70870 4.87974 4.95640 4.97164 5.06702 5.13607 5.17813 5.23450 5.27945 5.33500 5.43549 5.46359 5.50644 5.52649 5.55236 5.60162 5.60969 5.68308 5.72828 5.74404 5.83484 5.86896 5.91662 6.09383 6.12839 6.33818 6.38561 6.73366 6.78879 7.52259 7.57354 7.72378 7.90689 8.20087 8.50805 8.61024 8.92920 9.72305 11.09728 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.002369 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.712283 B =11817.340061 C =12064.330992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.157 3.843 4 H 0.087 0.913 5 C -0.170 4.170 6 N -0.615 5.615 7 C 0.101 3.899 8 C -0.118 4.118 9 C -0.114 4.114 10 C -0.108 4.108 11 C 0.105 3.895 12 N -0.628 5.628 13 C 0.527 3.473 14 O -0.535 6.535 15 C -0.116 4.116 16 C 0.023 3.977 17 C -0.607 4.607 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 1.075 2.925 22 H -0.290 1.290 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.134 3.866 26 C 0.542 3.458 27 O -0.518 6.518 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.014 0.986 47 H 0.014 0.986 48 H 0.273 0.727 49 H 0.070 0.930 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -18.190 22.574 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.055 3.945 4 H 0.105 0.895 5 C -0.228 4.228 6 N -0.350 5.350 7 C -0.021 4.021 8 C -0.156 4.156 9 C -0.118 4.118 10 C -0.146 4.146 11 C -0.018 4.018 12 N -0.365 5.365 13 C 0.318 3.682 14 O -0.410 6.410 15 C -0.156 4.156 16 C -0.014 4.014 17 C -0.646 4.646 18 H 0.068 0.932 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.904 3.096 22 H -0.216 1.216 23 H -0.214 1.214 24 H -0.214 1.214 25 C 0.011 3.989 26 C 0.328 3.672 27 O -0.393 6.393 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.657 -17.167 21.411 28.240 hybrid contribution -0.009 -1.098 1.449 1.818 sum -6.665 -18.265 22.860 30.010 Atomic orbital electron populations 1.21723 0.95532 1.01660 1.01621 1.21956 0.96378 0.96088 1.03530 1.21010 0.95348 0.93294 0.84860 0.89471 1.22197 0.94873 1.02634 1.03089 1.48541 1.51421 1.29002 1.06021 1.22220 0.94447 0.87642 0.97835 1.22530 0.97676 1.02242 0.93147 1.21582 0.97614 0.96949 0.95633 1.22465 1.02199 0.97847 0.92120 1.22046 0.93252 0.88641 0.97875 1.48776 1.43014 1.24299 1.20423 1.21335 0.81996 0.78266 0.86571 1.90673 1.33989 1.44535 1.71828 1.21705 1.00242 1.02895 0.90750 1.19041 0.96476 0.90403 0.95495 1.22074 1.26489 1.11131 1.04867 0.93170 1.25852 0.96391 0.92850 1.03897 1.70675 1.24994 1.36966 1.22177 0.83465 0.75617 0.75606 0.74909 1.21552 1.21367 1.21353 1.21725 0.94757 0.97502 0.84947 1.19980 0.79710 0.83900 0.83588 1.90691 1.36822 1.28311 1.83448 0.92714 0.92932 0.92754 0.90275 0.90909 0.92336 0.91480 0.90867 0.90194 0.90851 0.88578 0.89394 0.89503 0.89302 0.90884 0.90832 0.90083 0.90076 0.96731 0.96731 0.91667 0.91149 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.80 37.16 0.36 -0.56 16 2 C -0.14 -1.02 5.36 -26.73 -0.14 -1.16 16 3 C 0.16 1.14 2.87 -67.93 -0.20 0.94 16 4 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 5 C -0.17 -1.35 9.20 37.16 0.34 -1.00 16 6 N -0.62 -5.15 2.30 -165.00 -0.38 -5.53 16 7 C 0.10 0.65 7.33 -2.86 -0.02 0.63 16 8 C -0.12 -0.87 6.19 -25.67 -0.16 -1.03 16 9 C -0.11 -1.13 0.68 -155.26 -0.11 -1.24 16 10 C -0.11 -1.00 5.96 -25.53 -0.15 -1.15 16 11 C 0.11 1.16 6.43 -2.86 -0.02 1.14 16 12 N -0.63 -9.36 3.34 -170.80 -0.57 -9.93 16 13 C 0.53 10.42 7.85 -10.99 -0.09 10.33 16 14 O -0.53 -12.77 16.26 5.56 0.09 -12.68 16 15 C -0.12 -2.41 4.83 -27.88 -0.13 -2.54 16 16 C 0.02 0.63 3.57 -27.88 -0.10 0.53 16 17 C -0.61 -17.51 9.11 -34.44 -0.31 -17.83 16 18 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 19 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 20 N -0.91 -28.97 13.65 55.43 0.76 -28.21 16 21 Si 1.08 25.63 29.90 -169.99 -5.08 20.55 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.13 1.78 5.77 -3.03 -0.02 1.76 16 26 C 0.54 5.93 6.27 -11.37 -0.07 5.86 16 27 O -0.52 -7.27 14.75 5.56 0.08 -7.19 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.38 7.75 -51.93 -0.40 -0.02 16 31 H 0.08 0.78 6.70 -51.92 -0.35 0.43 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.77 6.77 -51.93 -0.35 0.42 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.80 7.88 -51.93 -0.41 0.39 16 39 H 0.09 0.52 7.67 -51.93 -0.40 0.12 16 40 H 0.09 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.09 0.91 7.76 -51.93 -0.40 0.51 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.01 0.42 7.96 -51.93 -0.41 0.01 16 47 H 0.01 0.42 7.97 -51.93 -0.41 0.01 16 48 H 0.27 8.80 7.22 -40.82 -0.29 8.50 16 49 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 50 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -36.06 394.95 -9.00 -45.06 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.94 Total: -3.03 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.91 Total: -4.99 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.19 Total: -43.67 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.17 Total: -19.87 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.06 -9.00 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.314 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds