Wall clock time and date at job start Tue Mar 31 2020 14:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47397 * 2 1 4 4 O 1.21281 * 119.99814 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63224 * 0.03065 * 5 3 2 7 7 C 1.53194 * 108.77715 * 126.36718 * 6 5 3 8 8 C 1.53099 * 109.32940 * 54.63549 * 7 6 5 9 9 C 1.53041 * 109.50576 * 298.65432 * 8 7 6 10 10 H 1.09000 * 109.49580 * 301.38785 * 9 8 7 11 11 C 1.50700 * 109.50195 * 181.31782 * 9 8 7 12 12 O 1.21276 * 119.99567 * 335.55537 * 11 9 8 13 13 N 1.34772 * 120.00002 * 155.55337 * 11 9 8 14 14 C 1.46925 * 120.62942 * 184.93009 * 13 11 9 15 15 C 1.53624 * 108.54543 * 126.37071 * 14 13 11 16 16 C 1.53038 * 109.24262 * 54.85386 * 15 14 13 17 17 C 1.50700 * 109.45762 * 178.49148 * 16 15 14 18 18 H 1.08010 * 119.99554 * 120.07001 * 17 16 15 19 19 C 1.37876 * 120.00348 * 300.06995 * 17 16 15 20 20 N 1.31511 * 119.99795 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47039 * 89.99566 * 21 19 17 23 23 H 1.48497 * 109.47193 * 209.99673 * 21 19 17 24 24 H 1.48501 * 109.47145 * 329.99871 * 21 19 17 25 25 C 1.53042 * 109.53875 * 298.51006 * 16 15 14 26 26 C 1.46929 * 120.63046 * 5.20623 * 13 11 9 27 27 C 1.46929 * 120.62706 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47464 * 59.99458 * 1 2 3 29 29 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46913 * 299.99679 * 1 2 3 31 31 H 1.09002 * 109.46913 * 240.00321 * 2 1 3 32 32 H 1.08996 * 109.47464 * 120.00542 * 2 1 3 33 33 H 1.08998 * 109.58451 * 246.15443 * 6 5 3 34 34 H 1.08997 * 109.58713 * 6.57675 * 6 5 3 35 35 H 1.09000 * 109.49291 * 174.58791 * 7 6 5 36 36 H 1.08999 * 109.49458 * 294.64919 * 7 6 5 37 37 H 1.09003 * 109.50443 * 178.63072 * 8 7 6 38 38 H 1.09000 * 109.45558 * 58.65393 * 8 7 6 39 39 H 1.09002 * 109.58248 * 246.20192 * 14 13 11 40 40 H 1.09001 * 109.58784 * 6.62329 * 14 13 11 41 41 H 1.09000 * 109.63090 * 294.86263 * 15 14 13 42 42 H 1.08996 * 109.45557 * 174.74367 * 15 14 13 43 43 H 1.08994 * 109.44934 * 58.52593 * 16 15 14 44 44 H 0.97002 * 119.99955 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.49931 * 301.42145 * 25 16 15 46 46 H 1.08998 * 109.52509 * 181.33182 * 25 16 15 47 47 H 1.08994 * 109.58777 * 353.37299 * 26 13 11 48 48 H 1.09000 * 109.58390 * 113.66075 * 26 13 11 49 49 H 1.08997 * 109.58669 * 113.84507 * 27 5 3 50 50 H 1.08993 * 109.70441 * 353.48609 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3244 0.5608 0.0004 7 6 5.2968 0.7560 -1.1671 8 6 5.9317 2.1459 -1.0709 9 6 4.8400 3.2141 -1.1669 10 1 4.3038 3.1025 -2.1093 11 6 5.4683 4.5825 -1.1047 12 8 6.5462 4.7309 -0.5692 13 7 4.8323 5.6412 -1.6442 14 6 5.4783 6.9601 -1.6875 15 6 5.4528 7.4693 -3.1367 16 6 4.0109 7.4588 -3.6496 17 6 3.9755 7.9925 -5.0586 18 1 3.6057 7.3722 -5.8618 19 6 4.4150 9.2724 -5.3223 20 7 4.8647 10.0278 -4.3442 21 14 4.3704 9.9341 -7.0686 22 1 3.0650 10.5985 -7.3130 23 1 5.4683 10.9166 -7.2539 24 1 4.5423 8.8130 -8.0272 25 6 3.4722 6.0265 -3.6333 26 6 3.4774 5.4997 -2.1947 27 6 3.8624 3.0468 0.0011 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.8771 0.5586 0.9399 34 1 3.7969 -0.3856 -0.1177 35 1 6.0768 -0.0040 -1.1218 36 1 4.7563 0.6670 -2.1095 37 1 6.6424 2.2786 -1.8866 38 1 6.4514 2.2424 -0.1176 39 1 4.9366 7.6535 -1.0441 40 1 6.5102 6.8729 -1.3474 41 1 6.0665 6.8220 -3.7631 42 1 5.8439 8.4861 -3.1712 43 1 3.3929 8.0866 -3.0079 44 1 5.1736 10.9284 -4.5297 45 1 4.1046 5.3928 -4.2550 46 1 2.4535 6.0160 -4.0208 47 1 3.1888 4.4486 -2.1895 48 1 2.7756 6.0744 -1.5904 49 1 4.3775 3.2470 0.9406 50 1 3.0313 3.7423 -0.1154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336592816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:08 Heat of formation + Delta-G solvation = -89.433021 kcal Electronic energy + Delta-G solvation = -28728.209536 eV Core-core repulsion = 24947.362841 eV Total energy + Delta-G solvation = -3780.846695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 9.99 seconds Orbital eigenvalues (eV) -40.75717 -39.59428 -37.53454 -36.64117 -33.69767 -33.41972 -32.70949 -31.70348 -30.95904 -29.91509 -26.39834 -26.19105 -24.78633 -23.51973 -22.83341 -22.37455 -21.20956 -19.59559 -19.11929 -18.30213 -17.45915 -16.96238 -16.23554 -16.14607 -15.96464 -15.33778 -15.13314 -14.56772 -14.43611 -14.06882 -14.00832 -13.69044 -13.53432 -13.13282 -13.02299 -12.88839 -12.76871 -12.58670 -12.38906 -12.20316 -12.00556 -11.77477 -11.62559 -11.45405 -11.26119 -11.12634 -11.06828 -10.94927 -10.78941 -10.64100 -10.40734 -10.08090 -10.01608 -9.58041 -9.50105 -9.13600 -8.92784 -8.86562 -8.37063 -7.99898 -6.01841 -4.08584 2.40694 2.62709 2.97857 3.28764 3.35913 3.38647 3.46132 4.20207 4.40956 4.41909 4.61116 4.63082 4.72411 4.78219 4.81642 4.87291 5.01486 5.14038 5.20514 5.27886 5.36601 5.45192 5.47040 5.49724 5.58306 5.63308 5.65823 5.75450 5.80107 5.91866 5.95850 5.98110 6.09013 6.15147 6.20489 6.27316 6.41283 6.45199 6.62476 6.83903 6.96125 7.14228 7.18786 7.33466 7.69338 7.88970 7.93734 7.96452 8.06360 8.40079 8.52707 8.94733 9.56518 11.03608 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.003084 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.573348 B = 9077.181583 C = 9928.438047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.511 3.489 4 O -0.536 6.536 5 N -0.613 5.613 6 C 0.105 3.895 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.123 4.123 10 H 0.097 0.903 11 C 0.517 3.483 12 O -0.553 6.553 13 N -0.596 5.596 14 C 0.108 3.892 15 C -0.122 4.122 16 C 0.049 3.951 17 C -0.513 4.513 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.124 4.124 26 C 0.103 3.897 27 C 0.124 3.876 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -22.042 9.428 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.300 3.700 4 O -0.412 6.412 5 N -0.347 5.347 6 C -0.018 4.018 7 C -0.173 4.173 8 C -0.139 4.139 9 C -0.145 4.145 10 H 0.115 0.885 11 C 0.303 3.697 12 O -0.432 6.432 13 N -0.328 5.328 14 C -0.013 4.013 15 C -0.160 4.160 16 C 0.030 3.970 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.162 4.162 26 C -0.019 4.019 27 C 0.001 3.999 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.428 -21.261 9.738 23.511 hybrid contribution 0.096 0.464 -1.115 1.211 sum -2.332 -20.797 8.624 22.635 Atomic orbital electron populations 1.21546 0.92932 1.01550 1.03551 1.21658 0.98677 0.93804 1.04095 1.20840 0.81483 0.92035 0.75632 1.90725 1.54646 1.46555 1.49300 1.48146 1.05728 1.07073 1.73775 1.21817 0.91119 0.89493 0.99326 1.21961 0.98851 0.97865 0.98667 1.21363 0.96558 0.92061 1.03920 1.21709 0.98019 0.93683 1.01062 0.88495 1.20237 0.85286 0.85687 0.78449 1.90642 1.22085 1.85528 1.44974 1.48286 1.16996 1.09893 1.57603 1.22001 0.97451 0.81527 1.00352 1.22085 1.00592 1.02701 0.90628 1.18632 0.92141 0.89549 0.96646 1.21184 1.41991 0.98533 0.93440 0.92734 1.24967 0.95171 0.96919 0.96936 1.69844 1.42960 1.08997 1.31109 0.86613 0.77640 0.78775 0.85076 1.20709 1.21252 1.20002 1.22011 1.00991 1.00317 0.92862 1.21943 0.82536 1.00708 0.96745 1.21473 0.97613 0.83473 0.97372 0.91819 0.92111 0.91958 0.88887 0.89014 0.90976 0.89485 0.90132 0.91252 0.91002 0.90509 0.92234 0.90647 0.94382 0.87835 0.95430 0.92944 0.92956 0.92037 0.91102 0.91583 0.90856 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.15 0.34 -0.70 16 2 C -0.14 -0.98 4.77 -27.89 -0.13 -1.12 16 3 C 0.51 5.65 7.70 -10.99 -0.08 5.57 16 4 O -0.54 -8.17 15.40 5.56 0.09 -8.09 16 5 N -0.61 -6.16 2.97 -172.75 -0.51 -6.67 16 6 C 0.11 0.70 6.34 -3.71 -0.02 0.68 16 7 C -0.14 -0.99 6.08 -26.58 -0.16 -1.15 16 8 C -0.10 -1.09 4.67 -26.66 -0.12 -1.22 16 9 C -0.12 -1.58 1.81 -91.63 -0.17 -1.75 16 10 H 0.10 1.26 6.53 -51.93 -0.34 0.92 16 11 C 0.52 8.83 6.81 -10.99 -0.07 8.76 16 12 O -0.55 -11.00 15.55 5.56 0.09 -10.91 16 13 N -0.60 -10.82 2.97 -172.50 -0.51 -11.33 16 14 C 0.11 2.19 6.45 -3.49 -0.02 2.16 16 15 C -0.12 -2.83 5.17 -26.39 -0.14 -2.96 16 16 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 17 C -0.51 -13.77 8.56 -34.44 -0.29 -14.06 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 20 N -0.89 -24.93 11.31 55.43 0.63 -24.31 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 26 C 0.10 1.75 5.87 -3.71 -0.02 1.73 16 27 C 0.12 1.52 5.52 -3.69 -0.02 1.50 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.09 0.48 7.69 -51.93 -0.40 0.08 16 32 H 0.09 0.45 7.94 -51.93 -0.41 0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.36 5.93 -51.93 -0.31 0.06 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.54 7.04 -51.93 -0.37 1.18 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.07 1.05 5.01 -51.93 -0.26 0.79 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.10 1.39 6.15 -51.93 -0.32 1.07 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -31.80 380.85 -9.44 -41.24 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.58 Total: 0.87 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.35 Total: -2.61 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.40 Total: -42.31 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.80 -9.44 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336592816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.190 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.99 seconds