Wall clock time and date at job start Tue Mar 31 2020 14:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47397 * 2 1 4 4 O 1.21281 * 119.99814 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63224 * 0.03065 * 5 3 2 7 7 C 1.53194 * 108.77715 * 126.36718 * 6 5 3 8 8 C 1.53099 * 109.32940 * 54.63549 * 7 6 5 9 9 C 1.53041 * 109.50576 * 298.65432 * 8 7 6 10 10 H 1.09000 * 109.49580 * 301.38785 * 9 8 7 11 11 C 1.50700 * 109.50195 * 181.31782 * 9 8 7 12 12 O 1.21276 * 119.99567 * 335.55537 * 11 9 8 13 13 N 1.34772 * 120.00002 * 155.55337 * 11 9 8 14 14 C 1.46925 * 120.62942 * 184.93009 * 13 11 9 15 15 C 1.53624 * 108.54543 * 126.37071 * 14 13 11 16 16 C 1.53038 * 109.24262 * 54.85386 * 15 14 13 17 17 C 1.50700 * 109.45762 * 178.49148 * 16 15 14 18 18 H 1.08010 * 119.99554 * 120.07001 * 17 16 15 19 19 C 1.37876 * 120.00348 * 300.06995 * 17 16 15 20 20 N 1.31511 * 119.99795 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47039 * 89.99566 * 21 19 17 23 23 H 1.48497 * 109.47193 * 209.99673 * 21 19 17 24 24 H 1.48501 * 109.47145 * 329.99871 * 21 19 17 25 25 C 1.53042 * 109.53875 * 298.51006 * 16 15 14 26 26 C 1.46929 * 120.63046 * 5.20623 * 13 11 9 27 27 C 1.46929 * 120.62706 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47464 * 59.99458 * 1 2 3 29 29 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46913 * 299.99679 * 1 2 3 31 31 H 1.09002 * 109.46913 * 240.00321 * 2 1 3 32 32 H 1.08996 * 109.47464 * 120.00542 * 2 1 3 33 33 H 1.08998 * 109.58451 * 246.15443 * 6 5 3 34 34 H 1.08997 * 109.58713 * 6.57675 * 6 5 3 35 35 H 1.09000 * 109.49291 * 174.58791 * 7 6 5 36 36 H 1.08999 * 109.49458 * 294.64919 * 7 6 5 37 37 H 1.09003 * 109.50443 * 178.63072 * 8 7 6 38 38 H 1.09000 * 109.45558 * 58.65393 * 8 7 6 39 39 H 1.09002 * 109.58248 * 246.20192 * 14 13 11 40 40 H 1.09001 * 109.58784 * 6.62329 * 14 13 11 41 41 H 1.09000 * 109.63090 * 294.86263 * 15 14 13 42 42 H 1.08996 * 109.45557 * 174.74367 * 15 14 13 43 43 H 1.08994 * 109.44934 * 58.52593 * 16 15 14 44 44 H 0.97002 * 119.99955 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.49931 * 301.42145 * 25 16 15 46 46 H 1.08998 * 109.52509 * 181.33182 * 25 16 15 47 47 H 1.08994 * 109.58777 * 353.37299 * 26 13 11 48 48 H 1.09000 * 109.58390 * 113.66075 * 26 13 11 49 49 H 1.08997 * 109.58669 * 113.84507 * 27 5 3 50 50 H 1.08993 * 109.70441 * 353.48609 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3244 0.5608 0.0004 7 6 5.2968 0.7560 -1.1671 8 6 5.9317 2.1459 -1.0709 9 6 4.8400 3.2141 -1.1669 10 1 4.3038 3.1025 -2.1093 11 6 5.4683 4.5825 -1.1047 12 8 6.5462 4.7309 -0.5692 13 7 4.8323 5.6412 -1.6442 14 6 5.4783 6.9601 -1.6875 15 6 5.4528 7.4693 -3.1367 16 6 4.0109 7.4588 -3.6496 17 6 3.9755 7.9925 -5.0586 18 1 3.6057 7.3722 -5.8618 19 6 4.4150 9.2724 -5.3223 20 7 4.8647 10.0278 -4.3442 21 14 4.3704 9.9341 -7.0686 22 1 3.0650 10.5985 -7.3130 23 1 5.4683 10.9166 -7.2539 24 1 4.5423 8.8130 -8.0272 25 6 3.4722 6.0265 -3.6333 26 6 3.4774 5.4997 -2.1947 27 6 3.8624 3.0468 0.0011 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.8771 0.5586 0.9399 34 1 3.7969 -0.3856 -0.1177 35 1 6.0768 -0.0040 -1.1218 36 1 4.7563 0.6670 -2.1095 37 1 6.6424 2.2786 -1.8866 38 1 6.4514 2.2424 -0.1176 39 1 4.9366 7.6535 -1.0441 40 1 6.5102 6.8729 -1.3474 41 1 6.0665 6.8220 -3.7631 42 1 5.8439 8.4861 -3.1712 43 1 3.3929 8.0866 -3.0079 44 1 5.1736 10.9284 -4.5297 45 1 4.1046 5.3928 -4.2550 46 1 2.4535 6.0160 -4.0208 47 1 3.1888 4.4486 -2.1895 48 1 2.7756 6.0744 -1.5904 49 1 4.3775 3.2470 0.9406 50 1 3.0313 3.7423 -0.1154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336592816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:59 Heat of formation + Delta-G solvation = -108.001794 kcal Electronic energy + Delta-G solvation = -28729.014738 eV Core-core repulsion = 24947.362841 eV Total energy + Delta-G solvation = -3781.651897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 10.12 seconds Orbital eigenvalues (eV) -41.82217 -40.76637 -38.77450 -37.96179 -35.43595 -34.38266 -33.39977 -33.06764 -32.45720 -31.39354 -28.14731 -27.02314 -25.88352 -24.68366 -24.09190 -23.82376 -22.31638 -21.11675 -19.96342 -19.67827 -18.63634 -18.30709 -17.90591 -17.06137 -16.94377 -16.55488 -16.51214 -16.19428 -15.31068 -15.19042 -15.02756 -14.89956 -14.70796 -14.69012 -14.40816 -14.14543 -13.92469 -13.75259 -13.57953 -13.38999 -13.08025 -13.00581 -12.84174 -12.66205 -12.48545 -12.45850 -12.20966 -12.04330 -11.98444 -11.95758 -11.85070 -11.63432 -11.48277 -11.17349 -10.93133 -10.85530 -10.62522 -10.42900 -9.73564 -9.59297 -8.09962 -6.24302 1.40007 1.41298 1.43712 1.50836 1.66920 1.87959 2.13832 2.42089 3.16647 3.40440 3.50294 3.71425 3.81060 3.88913 4.05552 4.09793 4.20173 4.22006 4.24929 4.30184 4.31161 4.44698 4.45821 4.50900 4.59164 4.63395 4.70623 4.73148 4.80573 4.84931 4.90798 4.91870 5.02020 5.09322 5.10442 5.11635 5.14607 5.18398 5.36504 5.38392 5.41137 5.46314 5.49181 5.63582 5.93604 6.07414 6.34808 6.40656 6.45467 6.86706 7.09014 7.17926 7.44026 8.93759 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.003084 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.573348 B = 9077.181583 C = 9928.438047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.503 3.497 4 O -0.589 6.589 5 N -0.610 5.610 6 C 0.100 3.900 7 C -0.127 4.127 8 C -0.101 4.101 9 C -0.111 4.111 10 H 0.101 0.899 11 C 0.514 3.486 12 O -0.582 6.582 13 N -0.602 5.602 14 C 0.119 3.881 15 C -0.109 4.109 16 C 0.046 3.954 17 C -0.533 4.533 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 0.953 3.047 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.269 1.269 25 C -0.115 4.115 26 C 0.113 3.887 27 C 0.129 3.871 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.000 1.000 44 H 0.261 0.739 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -25.665 9.273 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.294 3.706 4 O -0.469 6.469 5 N -0.343 5.343 6 C -0.021 4.021 7 C -0.165 4.165 8 C -0.139 4.139 9 C -0.133 4.133 10 H 0.119 0.881 11 C 0.303 3.697 12 O -0.463 6.463 13 N -0.333 5.333 14 C -0.003 4.003 15 C -0.148 4.148 16 C 0.027 3.973 17 C -0.571 4.571 18 H 0.072 0.928 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.153 4.153 26 C -0.009 4.009 27 C 0.004 3.996 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.018 0.982 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.721 -24.934 9.583 26.851 hybrid contribution 0.221 1.609 -1.037 1.927 sum -2.500 -23.325 8.546 24.967 Atomic orbital electron populations 1.21557 0.93826 1.02641 1.01681 1.21744 0.97821 0.91027 1.06782 1.21708 0.81196 0.93370 0.74347 1.90706 1.55982 1.48458 1.51728 1.48260 1.06258 1.06754 1.73035 1.22149 0.90726 0.89613 0.99600 1.21948 0.99560 0.95805 0.99138 1.21399 0.95752 0.93653 1.03060 1.21685 0.98718 0.91370 1.01502 0.88104 1.21023 0.84794 0.86768 0.77123 1.90622 1.23459 1.86139 1.46057 1.48324 1.17442 1.09413 1.58158 1.21667 0.97574 0.82945 0.98151 1.21832 0.99807 1.00783 0.92378 1.18596 0.92132 0.91647 0.94897 1.21566 1.41916 0.98933 0.94693 0.92845 1.25733 0.94939 0.97326 1.00627 1.69982 1.43539 1.09158 1.32890 0.85637 0.77664 0.78154 0.80688 1.20149 1.21095 1.19352 1.21868 1.01059 0.97545 0.94859 1.21902 0.81951 1.02278 0.94744 1.21225 0.96510 0.85085 0.96743 0.93861 0.89419 0.93785 0.86046 0.86011 0.89884 0.85808 0.87394 0.90911 0.92122 0.91285 0.92311 0.91045 0.95587 0.90815 0.98157 0.93013 0.93035 0.91215 0.88296 0.91400 0.91218 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 71.98 0.66 -1.14 16 2 C -0.13 -1.33 4.77 29.84 0.14 -1.19 16 3 C 0.50 10.02 7.70 87.66 0.67 10.70 16 4 O -0.59 -17.78 15.40 -3.03 -0.05 -17.82 16 5 N -0.61 -10.65 2.97 -818.85 -2.43 -13.08 16 6 C 0.10 0.89 6.34 86.36 0.55 1.44 16 7 C -0.13 -1.34 6.08 30.69 0.19 -1.15 16 8 C -0.10 -1.98 4.67 30.64 0.14 -1.84 16 9 C -0.11 -2.73 1.81 -11.45 -0.02 -2.75 16 10 H 0.10 2.42 6.53 -2.39 -0.02 2.41 16 11 C 0.51 17.54 6.81 87.66 0.60 18.13 16 12 O -0.58 -23.33 15.55 -3.02 -0.05 -23.38 16 13 N -0.60 -22.06 2.97 -818.07 -2.43 -24.49 16 14 C 0.12 4.99 6.45 86.51 0.56 5.55 16 15 C -0.11 -5.29 5.17 30.82 0.16 -5.13 16 16 C 0.05 2.26 2.06 -11.51 -0.02 2.24 16 17 C -0.53 -29.14 8.56 25.60 0.22 -28.92 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C 0.01 0.68 5.30 84.65 0.45 1.13 16 20 N -0.92 -52.82 11.31 21.45 0.24 -52.57 16 21 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 C -0.12 -4.56 5.30 30.67 0.16 -4.40 16 26 C 0.11 3.81 5.87 86.36 0.51 4.32 16 27 C 0.13 3.02 5.52 86.38 0.48 3.49 16 28 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.12 0.58 7.69 -2.39 -0.02 0.56 16 32 H 0.12 0.53 7.94 -2.39 -0.02 0.52 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.12 0.26 5.93 -2.39 -0.01 0.25 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.07 3.03 7.04 -2.39 -0.02 3.02 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 4.02 6.03 -2.39 -0.01 4.00 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.10 2.80 5.01 -2.39 -0.01 2.79 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.08 2.19 6.15 -2.39 -0.01 2.18 16 Total: -1.00 -72.75 380.85 3.67 -69.08 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.91 Total: 16.08 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.44 Total: 0.49 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -4.62 Total: -90.14 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.09 Total: -41.20 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.75 3.67 -69.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336592816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.922 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.12 seconds