Wall clock time and date at job start Tue Mar 31 2020 16:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.55286 * 2 1 4 4 C 1.55000 * 110.61910 * 237.12555 * 2 1 3 5 5 C 1.54808 * 102.09626 * 204.31832 * 4 2 1 6 6 C 1.54099 * 104.18500 * 20.87578 * 5 4 2 7 7 H 1.09004 * 109.88473 * 242.45887 * 6 5 4 8 8 C 1.50707 * 109.87911 * 121.45893 * 6 5 4 9 9 O 1.21279 * 120.00123 * 245.00558 * 8 6 5 10 10 N 1.34779 * 120.00037 * 64.99385 * 8 6 5 11 11 C 1.46928 * 120.56255 * 0.03167 * 10 8 6 12 12 C 1.53309 * 108.70813 * 125.73870 * 11 10 8 13 13 C 1.52269 * 109.42005 * 53.50994 * 12 11 10 14 14 C 1.54518 * 110.20761 * 177.80036 * 13 12 11 15 15 C 1.55027 * 101.53021 * 276.40037 * 14 13 12 16 16 N 1.47481 * 104.90125 * 323.62160 * 15 14 13 17 17 C 1.36941 * 125.66165 * 204.03809 * 16 15 14 18 18 H 1.07999 * 120.00365 * 161.54093 * 17 16 15 19 19 C 1.38814 * 119.99561 * 341.54678 * 17 16 15 20 20 N 1.31621 * 119.99697 * 157.54936 * 19 17 16 21 21 Si 1.86791 * 120.00395 * 337.54710 * 19 17 16 22 22 H 1.48500 * 109.47198 * 84.54100 * 21 19 17 23 23 H 1.48503 * 109.47497 * 204.54059 * 21 19 17 24 24 H 1.48505 * 109.47254 * 324.54525 * 21 19 17 25 25 C 1.47173 * 108.67833 * 24.02013 * 16 15 14 26 26 C 1.52279 * 111.26809 * 300.36144 * 13 12 11 27 27 C 1.46926 * 120.56404 * 180.02562 * 10 8 6 28 28 O 1.43742 * 107.29728 * 2.03384 * 6 5 4 29 29 H 1.09004 * 109.47212 * 182.87574 * 1 2 3 30 30 H 1.08998 * 109.47222 * 302.87544 * 1 2 3 31 31 H 1.09002 * 109.47527 * 62.87719 * 1 2 3 32 32 H 1.09000 * 110.90853 * 86.11231 * 4 2 1 33 33 H 1.09005 * 110.93574 * 322.53138 * 4 2 1 34 34 H 1.09005 * 110.48763 * 262.20590 * 5 4 2 35 35 H 1.08992 * 110.60469 * 139.61250 * 5 4 2 36 36 H 1.09009 * 109.59788 * 5.97149 * 11 10 8 37 37 H 1.08996 * 109.59732 * 245.50769 * 11 10 8 38 38 H 1.09004 * 109.48486 * 293.52077 * 12 11 10 39 39 H 1.09000 * 109.48064 * 173.49073 * 12 11 10 40 40 H 1.08994 * 111.01617 * 34.46290 * 14 13 12 41 41 H 1.09000 * 111.01187 * 158.34499 * 14 13 12 42 42 H 1.08995 * 110.35193 * 204.76711 * 15 14 13 43 43 H 1.09001 * 110.44399 * 82.52570 * 15 14 13 44 44 H 0.97002 * 120.00344 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.91011 * 239.11729 * 25 16 15 46 46 H 1.09002 * 109.90787 * 117.85806 * 25 16 15 47 47 H 1.09002 * 109.48080 * 179.62877 * 26 13 12 48 48 H 1.08997 * 109.47945 * 299.66619 * 26 13 12 49 49 H 1.09001 * 109.59954 * 114.50576 * 27 10 8 50 50 H 1.09004 * 109.73368 * 354.11178 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4811 -1.2121 -0.7271 6 6 3.3875 -1.1219 0.8084 7 1 4.0897 -0.3752 1.1794 8 6 3.6963 -2.4640 1.4204 9 8 2.8366 -3.0651 2.0292 10 7 4.9276 -2.9964 1.2911 11 6 5.9785 -2.2788 0.5566 12 6 7.2064 -2.1411 1.4642 13 6 7.6058 -3.5142 1.9873 14 6 8.8757 -3.4040 2.8607 15 6 9.9936 -3.4304 1.7870 16 7 9.5077 -4.3671 0.7566 17 6 10.2928 -5.0635 -0.1231 18 1 9.8970 -5.9310 -0.6302 19 6 11.5974 -4.6545 -0.3630 20 7 12.4810 -5.5121 -0.8279 21 14 12.0991 -2.8870 -0.0261 22 1 12.4568 -2.7387 1.4075 23 1 13.2712 -2.5360 -0.8676 24 1 10.9679 -1.9810 -0.3502 25 6 8.0392 -4.4294 0.8310 26 6 6.4747 -4.1531 2.7819 27 6 5.2420 -4.3043 1.8822 28 8 2.0417 -0.7348 1.1326 29 1 -0.3634 -1.0264 0.0516 30 1 -0.3633 0.5578 0.8631 31 1 -0.3634 0.4685 -0.9146 32 1 2.1482 -0.1451 -2.0960 33 1 1.4567 -1.6599 -1.4274 34 1 4.2403 -0.5267 -1.1039 35 1 3.7032 -2.2333 -1.0364 36 1 5.6180 -1.2889 0.2766 37 1 6.2467 -2.8394 -0.3388 38 1 6.9668 -1.4880 2.3034 39 1 8.0327 -1.7143 0.8957 40 1 8.8884 -2.4658 3.4153 41 1 8.9614 -4.2561 3.5351 42 1 10.9261 -3.7928 2.2194 43 1 10.1351 -2.4374 1.3603 44 1 13.3926 -5.2263 -0.9960 45 1 7.7207 -5.4530 1.0283 46 1 7.6048 -4.0766 -0.1044 47 1 6.7887 -5.1350 3.1361 48 1 6.2273 -3.5209 3.6346 49 1 5.4532 -5.0224 1.0899 50 1 4.3967 -4.6527 2.4757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035231421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:59 Heat of formation + Delta-G solvation = -52.730310 kcal Electronic energy + Delta-G solvation = -29083.968003 eV Core-core repulsion = 25304.712857 eV Total energy + Delta-G solvation = -3779.255146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.96258 -39.67922 -38.29632 -35.97184 -33.41444 -32.60295 -32.32775 -31.14162 -30.97154 -29.23915 -27.40909 -26.42590 -24.66272 -23.43630 -22.90850 -21.88780 -21.56293 -20.87587 -19.97579 -18.14185 -17.38886 -16.89693 -16.54873 -16.53625 -15.70161 -15.33283 -15.20320 -14.69835 -14.65945 -14.30075 -14.01733 -13.81686 -13.61783 -13.22841 -13.03693 -12.95008 -12.79219 -12.61521 -12.44913 -12.09199 -12.05539 -11.93550 -11.79467 -11.68946 -11.32431 -11.24219 -11.19268 -11.17581 -11.01263 -10.67683 -10.36160 -10.30766 -10.22258 -9.96394 -9.85257 -9.51122 -9.42867 -8.71056 -8.61383 -7.04532 -5.96045 -3.25674 2.49125 2.69340 3.32348 3.44218 3.47015 3.57510 4.09650 4.24844 4.44189 4.49117 4.52973 4.69215 4.76339 4.78076 4.83084 4.92487 5.01349 5.05278 5.11114 5.14959 5.25455 5.32094 5.33057 5.37163 5.40533 5.50791 5.52715 5.58566 5.63461 5.68725 5.72000 5.76497 5.80635 5.83548 5.93966 5.99458 6.06611 6.09585 6.25323 6.42063 6.45651 6.53616 6.59507 6.63721 6.74505 6.77760 7.31407 7.70838 8.10220 8.30128 8.82615 9.67930 10.17873 11.20320 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.003141 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.924734 B = 8913.221462 C = 9414.737230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.063 3.937 7 H 0.093 0.907 8 C 0.515 3.485 9 O -0.527 6.527 10 N -0.604 5.604 11 C 0.102 3.898 12 C -0.118 4.118 13 C -0.072 4.072 14 C -0.121 4.121 15 C 0.111 3.889 16 N -0.608 5.608 17 C -0.240 4.240 18 H 0.091 0.909 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.884 3.116 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.277 1.277 25 C 0.146 3.854 26 C -0.114 4.114 27 C 0.112 3.888 28 O -0.345 6.345 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.024 0.976 44 H 0.263 0.737 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.454 12.180 2.110 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.001 3.999 7 H 0.111 0.889 8 C 0.302 3.698 9 O -0.403 6.403 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.156 4.156 13 C -0.073 4.073 14 C -0.160 4.160 15 C -0.014 4.014 16 N -0.335 5.335 17 C -0.367 4.367 18 H 0.108 0.892 19 C -0.178 4.178 20 N -0.553 5.553 21 Si 0.715 3.285 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.203 1.203 25 C 0.021 3.979 26 C -0.153 4.153 27 C -0.010 4.010 28 O -0.264 6.264 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.830 11.712 2.500 23.166 hybrid contribution 0.834 1.124 -0.127 1.405 sum -18.996 12.836 2.373 23.049 Atomic orbital electron populations 1.21761 0.92841 1.03309 1.02391 1.23213 0.95581 0.95224 0.84885 0.90968 1.23202 0.95789 1.01113 0.98594 1.23011 0.98697 1.03985 0.92961 1.22582 0.87049 0.94810 0.95442 0.88902 1.20395 0.82032 0.87028 0.80345 1.90692 1.45989 1.62191 1.41427 1.48057 1.10415 1.20812 1.54657 1.22002 0.87762 0.96908 0.95395 1.21782 0.97248 0.97075 0.99487 1.21020 0.94660 0.95110 0.96509 1.22754 0.94748 1.01215 0.97271 1.21966 0.96525 0.93548 0.89331 1.44824 1.00678 1.51186 1.36820 1.18633 0.93464 1.06037 1.18610 0.89168 1.24992 0.95777 0.97780 0.99217 1.69850 1.03129 1.33314 1.49037 0.86956 0.76959 0.87649 0.76982 1.21296 1.23174 1.20345 1.21405 0.85575 0.96277 0.94670 1.21801 0.94042 1.01660 0.97767 1.21689 0.98247 0.83644 0.97384 1.89012 1.25887 1.73173 1.38301 0.91521 0.91767 0.91002 0.89722 0.90109 0.89320 0.89654 0.90043 0.90094 0.91714 0.90008 0.91730 0.91050 0.92550 0.95867 0.92745 0.94905 0.95130 0.90236 0.91704 0.90898 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.66 37.16 0.36 -0.71 16 2 C 0.07 0.59 3.97 -25.68 -0.10 0.48 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.15 -1.12 6.59 -24.72 -0.16 -1.28 16 5 C -0.15 -1.23 5.07 -25.20 -0.13 -1.36 16 6 C 0.06 0.68 2.96 -27.31 -0.08 0.60 16 7 H 0.09 0.85 7.51 -51.93 -0.39 0.46 16 8 C 0.52 7.09 6.89 -10.98 -0.08 7.01 16 9 O -0.53 -9.34 15.93 -14.02 -0.22 -9.56 16 10 N -0.60 -7.47 2.96 -172.58 -0.51 -7.98 16 11 C 0.10 1.12 5.32 -3.65 -0.02 1.10 16 12 C -0.12 -1.49 4.78 -26.94 -0.13 -1.62 16 13 C -0.07 -1.05 0.53 -154.09 -0.08 -1.14 16 14 C -0.12 -1.93 5.99 -24.86 -0.15 -2.08 16 15 C 0.11 2.32 4.38 -2.43 -0.01 2.31 16 16 N -0.61 -14.11 3.21 -170.22 -0.55 -14.66 16 17 C -0.24 -6.67 10.57 -15.06 -0.16 -6.83 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 19 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 20 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 21 Si 0.88 22.17 24.27 -169.99 -4.13 18.04 16 22 H -0.29 -6.93 6.49 56.52 0.37 -6.56 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.28 -6.74 6.66 56.52 0.38 -6.36 16 25 C 0.15 2.67 5.43 -3.31 -0.02 2.65 16 26 C -0.11 -1.45 4.71 -26.91 -0.13 -1.57 16 27 C 0.11 1.43 6.15 -3.62 -0.02 1.40 16 28 O -0.35 -4.36 10.44 -54.81 -0.57 -4.93 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 34 H 0.09 0.55 7.71 -51.93 -0.40 0.15 16 35 H 0.08 0.77 7.50 -51.93 -0.39 0.38 16 36 H 0.08 0.70 4.80 -51.92 -0.25 0.45 16 37 H 0.08 0.94 6.53 -51.93 -0.34 0.60 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.15 7.49 -51.93 -0.39 0.76 16 40 H 0.06 0.89 8.01 -51.93 -0.42 0.47 16 41 H 0.07 1.11 8.01 -51.93 -0.42 0.70 16 42 H 0.06 1.28 6.64 -51.93 -0.34 0.94 16 43 H 0.02 0.50 5.19 -51.93 -0.27 0.23 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 46 H 0.03 0.56 6.07 -51.93 -0.32 0.24 16 47 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.92 7.47 -51.93 -0.39 0.53 16 50 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -33.97 366.51 -9.16 -43.13 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.48 Total: -2.00 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.00 Total: -0.53 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.28 Total: -49.68 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.80 Total: -14.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.97 -9.16 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035231421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.596 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds