Wall clock time and date at job start Tue Mar 31 2020 16:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.87156 * 2 1 4 4 O 1.43740 * 109.87730 * 121.16681 * 2 1 3 5 5 C 1.44382 * 106.97657 * 145.93916 * 4 2 1 6 6 C 1.54995 * 103.48684 * 319.93453 * 5 4 2 7 7 C 1.54100 * 109.87511 * 238.99547 * 2 1 3 8 8 C 1.53004 * 110.49008 * 357.35280 * 7 2 1 9 9 C 1.50700 * 110.48770 * 119.87128 * 7 2 1 10 10 O 1.21276 * 120.00133 * 359.97438 * 9 7 2 11 11 N 1.34785 * 119.99971 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99568 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46969 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47372 * 179.97438 * 13 12 11 15 15 C 1.29445 * 117.69253 * 95.01979 * 14 13 12 16 16 C 1.50326 * 123.64782 * 180.81371 * 15 14 13 17 17 N 1.46992 * 109.20582 * 349.10192 * 16 15 14 18 18 C 1.36934 * 121.35969 * 222.92604 * 17 16 15 19 19 H 1.08001 * 120.00233 * 155.27032 * 18 17 16 20 20 C 1.38823 * 120.00320 * 335.26607 * 18 17 16 21 21 N 1.31610 * 120.00071 * 159.87198 * 20 18 17 22 22 Si 1.86795 * 119.99626 * 339.87683 * 20 18 17 23 23 H 1.48502 * 109.47397 * 88.34352 * 22 20 18 24 24 H 1.48505 * 109.47026 * 208.34112 * 22 20 18 25 25 H 1.48498 * 109.47405 * 328.33693 * 22 20 18 26 26 C 1.47333 * 117.26473 * 42.81884 * 17 16 15 27 27 C 1.49971 * 117.69014 * 274.99918 * 14 13 12 28 28 H 1.08998 * 109.47328 * 181.00780 * 1 2 3 29 29 H 1.09001 * 109.47109 * 301.00752 * 1 2 3 30 30 H 1.08998 * 109.47514 * 61.00331 * 1 2 3 31 31 H 1.09001 * 110.62094 * 78.43116 * 5 4 2 32 32 H 1.08996 * 110.61932 * 201.28266 * 5 4 2 33 33 H 1.09006 * 110.91098 * 278.82941 * 6 5 4 34 34 H 1.09005 * 110.90879 * 155.22642 * 6 5 4 35 35 H 1.09002 * 109.46925 * 181.84535 * 8 7 2 36 36 H 1.08993 * 109.47022 * 301.84426 * 8 7 2 37 37 H 1.08999 * 109.46884 * 61.84946 * 8 7 2 38 38 H 0.96993 * 120.00119 * 359.97438 * 11 9 7 39 39 H 1.08995 * 109.47453 * 60.00132 * 12 11 9 40 40 H 1.09001 * 109.46967 * 299.99583 * 12 11 9 41 41 H 1.09003 * 109.47154 * 59.99457 * 13 12 11 42 42 H 1.08996 * 109.46855 * 300.00274 * 13 12 11 43 43 H 1.07999 * 118.17839 * 0.83383 * 15 14 13 44 44 H 1.09004 * 109.52142 * 108.95648 * 16 15 14 45 45 H 1.09000 * 109.51969 * 229.07401 * 16 15 14 46 46 H 0.97000 * 120.00149 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.78253 * 178.70176 * 26 17 16 48 48 H 1.08995 * 109.78517 * 57.94374 * 26 17 16 49 49 H 1.08997 * 109.31957 * 40.74420 * 27 14 13 50 50 H 1.08998 * 109.31530 * 281.31156 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0187 -0.6996 1.1567 5 6 3.2379 -1.3652 0.7628 6 6 2.9194 -1.8906 -0.6602 7 6 2.0539 -0.7465 -1.2422 8 6 0.8895 -1.3134 -2.0570 9 6 2.8944 0.1703 -2.0930 10 8 3.0700 1.3213 -1.7534 11 7 3.4511 -0.2888 -3.2314 12 6 4.2686 0.6024 -4.0582 13 6 4.7759 -0.1611 -5.2832 14 6 5.6164 0.7558 -6.1341 15 6 6.8986 0.7330 -5.9575 16 6 7.8598 1.6024 -6.7191 17 7 7.1493 2.2499 -7.8312 18 6 7.7096 2.3424 -9.0772 19 1 7.0776 2.4387 -9.9477 20 6 9.0900 2.3123 -9.2216 21 7 9.6234 2.0044 -10.3847 22 14 10.1902 2.7089 -7.7651 23 1 10.4575 1.4681 -6.9943 24 1 11.4736 3.2743 -8.2536 25 1 9.5143 3.6997 -6.8895 26 6 5.8088 2.7931 -7.5506 27 6 4.9084 1.6298 -7.1260 28 1 -0.3634 -1.0275 0.0181 29 1 -0.3633 0.5294 0.8808 30 1 -0.3634 0.4981 -0.8988 31 1 4.0685 -0.6599 0.7346 32 1 3.4599 -2.1911 1.4386 33 1 2.3538 -2.8212 -0.6138 34 1 3.8331 -2.0208 -1.2403 35 1 1.2794 -1.8651 -2.9125 36 1 0.3000 -1.9831 -1.4309 37 1 0.2599 -0.4959 -2.4082 38 1 3.3110 -1.2094 -3.5029 39 1 5.1174 0.9612 -3.4761 40 1 3.6663 1.4508 -4.3831 41 1 3.9269 -0.5196 -5.8652 42 1 5.3780 -1.0097 -4.9587 43 1 7.3002 0.0513 -5.2224 44 1 8.2661 2.3651 -6.0546 45 1 8.6723 0.9906 -7.1110 46 1 10.5879 1.9838 -10.4857 47 1 5.4059 3.2627 -8.4479 48 1 5.8686 3.5259 -6.7460 49 1 3.9986 2.0246 -6.6738 50 1 4.6446 1.0392 -8.0033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160761105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:36 Heat of formation + Delta-G solvation = -70.605968 kcal Electronic energy + Delta-G solvation = -27729.873545 eV Core-core repulsion = 23949.843253 eV Total energy + Delta-G solvation = -3780.030293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96000 -39.92693 -39.40338 -36.86269 -35.41372 -34.85931 -33.48542 -32.51365 -31.93070 -30.42683 -28.59671 -27.21451 -26.37736 -25.12261 -24.15260 -23.49907 -22.66924 -22.41751 -20.30803 -19.62393 -18.59039 -17.82315 -17.41061 -17.15802 -16.96517 -16.47533 -16.31826 -16.07374 -15.99852 -15.54596 -15.34085 -15.12671 -15.01471 -14.80246 -14.33634 -14.25702 -13.90923 -13.74574 -13.55175 -13.47167 -13.18629 -13.05605 -12.81594 -12.66553 -12.58456 -12.45660 -12.34032 -12.14946 -12.14393 -12.00216 -11.90133 -11.73663 -11.52031 -11.38002 -10.92870 -10.73750 -10.58471 -10.16833 -9.66467 -8.99760 -8.18288 -5.49043 1.25772 1.30343 1.38712 1.47158 1.50597 2.09170 2.39157 2.82826 3.03664 3.30470 3.33552 3.60605 3.65352 3.85922 3.89845 4.01554 4.08820 4.11951 4.22802 4.24952 4.39283 4.40948 4.48131 4.56072 4.57855 4.61279 4.63376 4.66723 4.67441 4.78089 4.82378 4.83683 4.92105 4.97173 4.98783 5.00172 5.04623 5.10407 5.13052 5.15069 5.31104 5.36662 5.38499 5.71294 5.82341 5.87676 6.05270 6.17369 6.47466 6.86189 7.16006 7.58468 8.01932 9.01696 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.002297 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.720335 B =12185.291969 C =12540.592237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 H 0.058 0.942 4 O -0.390 6.390 5 C 0.036 3.964 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.136 4.136 9 C 0.521 3.479 10 O -0.583 6.583 11 N -0.709 5.709 12 C 0.131 3.869 13 C -0.080 4.080 14 C -0.108 4.108 15 C -0.175 4.175 16 C 0.141 3.859 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.056 0.944 20 C -0.037 4.037 21 N -0.957 5.957 22 Si 0.947 3.053 23 H -0.269 1.269 24 H -0.310 1.310 25 H -0.270 1.270 26 C 0.137 3.863 27 C -0.092 4.092 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.031 0.969 45 H 0.058 0.942 46 H 0.262 0.738 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.092 0.908 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 -13.066 21.731 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.075 0.925 4 O -0.310 6.310 5 C -0.040 4.040 6 C -0.172 4.172 7 C -0.111 4.111 8 C -0.193 4.193 9 C 0.308 3.692 10 O -0.463 6.463 11 N -0.361 5.361 12 C 0.007 3.993 13 C -0.118 4.118 14 C -0.109 4.109 15 C -0.194 4.194 16 C 0.017 3.983 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.074 0.926 20 C -0.232 4.232 21 N -0.604 5.604 22 Si 0.776 3.224 23 H -0.195 1.195 24 H -0.239 1.239 25 H -0.195 1.195 26 C 0.012 3.988 27 C -0.130 4.130 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.255 0.745 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.819 -12.259 22.060 32.089 hybrid contribution 1.432 0.470 -0.213 1.523 sum -18.387 -11.789 21.847 30.892 Atomic orbital electron populations 1.22023 0.91782 1.03844 1.02702 1.22793 0.96535 0.95522 0.83354 0.92460 1.88860 1.40276 1.67974 1.33879 1.23716 0.86917 0.96713 0.96652 1.23318 1.00569 0.97832 0.95514 1.22135 0.97370 0.95677 0.95877 1.22002 0.95585 1.01694 0.99999 1.20764 0.79299 0.87786 0.81367 1.90698 1.62358 1.20967 1.72271 1.45847 1.51241 1.16074 1.22942 1.21206 0.94118 0.93053 0.90943 1.20826 1.00093 0.96882 0.93950 1.20626 0.94206 0.98575 0.97489 1.22490 0.95359 1.00758 1.00795 1.20254 0.94958 0.94012 0.89076 1.44585 1.17307 1.65858 1.07125 1.18862 0.90334 1.44004 0.84116 0.92575 1.25830 0.98056 1.00680 0.98621 1.69947 1.11426 1.52722 1.26286 0.85984 0.77571 0.78883 0.79996 1.19537 1.23864 1.19493 1.21213 0.84246 0.94465 0.98873 1.20752 0.98143 0.96516 0.97634 0.89861 0.92449 0.90269 0.93781 0.86450 0.86511 0.88745 0.89944 0.88986 0.91705 0.74489 0.93031 0.92205 0.88687 0.89319 0.85674 0.95140 0.92421 0.92921 0.92072 0.94634 0.88937 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.40 71.98 0.60 -1.33 16 2 C 0.08 1.40 3.67 30.97 0.11 1.51 16 3 H 0.06 1.46 6.43 -2.39 -0.02 1.44 16 4 O -0.39 -7.74 11.19 -148.98 -1.67 -9.41 16 5 C 0.04 0.52 7.72 72.66 0.56 1.08 16 6 C -0.13 -1.26 6.25 31.90 0.20 -1.06 16 7 C -0.11 -1.43 0.82 -51.94 -0.04 -1.47 16 8 C -0.14 -0.97 7.17 71.98 0.52 -0.46 16 9 C 0.52 10.26 6.45 87.66 0.57 10.83 16 10 O -0.58 -17.52 15.25 -3.02 -0.05 -17.57 16 11 N -0.71 -10.43 5.30 -463.06 -2.45 -12.88 16 12 C 0.13 2.54 5.66 86.38 0.49 3.03 16 13 C -0.08 -1.43 5.32 29.85 0.16 -1.27 16 14 C -0.11 -3.03 5.11 -15.13 -0.08 -3.11 16 15 C -0.17 -5.76 9.47 27.12 0.26 -5.51 16 16 C 0.14 6.12 4.38 85.42 0.37 6.50 16 17 N -0.62 -29.97 2.81 -703.42 -1.97 -31.95 16 18 C -0.24 -14.05 10.14 84.04 0.85 -13.20 16 19 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 20 C -0.04 -2.22 5.26 84.87 0.45 -1.77 16 21 N -0.96 -60.75 13.97 21.65 0.30 -60.44 16 22 Si 0.95 47.47 24.17 68.60 1.66 49.13 16 23 H -0.27 -12.56 6.48 99.48 0.64 -11.92 16 24 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 25 H -0.27 -13.21 6.59 99.48 0.66 -12.56 16 26 C 0.14 5.27 6.58 86.26 0.57 5.84 16 27 C -0.09 -2.74 5.95 29.66 0.18 -2.57 16 28 H 0.08 0.80 6.67 -2.39 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.92 6.87 -2.39 -0.02 0.90 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 0.54 7.87 -2.38 -0.02 0.52 16 34 H 0.09 0.72 7.74 -2.38 -0.02 0.70 16 35 H 0.08 0.29 7.49 -2.39 -0.02 0.27 16 36 H 0.09 0.41 6.72 -2.39 -0.02 0.40 16 37 H 0.06 0.55 6.84 -2.39 -0.02 0.54 16 38 H 0.42 3.20 7.80 -92.71 -0.72 2.47 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 42 H 0.09 1.34 7.78 -2.39 -0.02 1.32 16 43 H 0.13 3.39 7.73 -2.91 -0.02 3.37 16 44 H 0.03 1.35 6.38 -2.38 -0.02 1.34 16 45 H 0.06 2.74 5.06 -2.39 -0.01 2.73 16 46 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 48 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -77.62 380.05 1.67 -75.94 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.09 Total: 10.15 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.76 Total: -2.97 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.13 Total: -105.27 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.71 Total: -26.98 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.66 Total: 49.13 kcal Total: -77.62 1.67 -75.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160761105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.337 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds