Wall clock time and date at job start Tue Mar 31 2020 13:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.68473 * 2 1 4 4 C 1.54485 * 110.93667 * 236.61069 * 2 1 3 5 5 N 1.47397 * 107.15570 * 218.86024 * 4 2 1 6 6 C 1.34781 * 126.02020 * 178.54608 * 5 4 2 7 7 O 1.21351 * 119.99994 * 179.97438 * 6 5 4 8 8 C 1.49443 * 119.99986 * 359.97073 * 6 5 4 9 9 O 1.21353 * 120.00468 * 0.02562 * 8 6 5 10 10 N 1.34781 * 119.99986 * 180.02562 * 8 6 5 11 11 C 1.46504 * 120.00049 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.46790 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46763 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47187 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99610 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00297 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99947 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47243 * 59.99961 * 18 16 14 20 20 H 1.48506 * 109.47379 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47450 * 300.00133 * 18 16 14 22 22 C 1.46520 * 107.95733 * 358.52175 * 5 4 2 23 23 H 1.08997 * 108.48447 * 269.66982 * 22 5 4 24 24 C 1.51177 * 113.00897 * 149.82366 * 22 5 4 25 25 C 1.52869 * 111.24182 * 293.62999 * 24 22 5 26 26 C 1.53252 * 108.42013 * 300.78594 * 25 24 22 27 27 C 1.52681 * 108.67363 * 63.18519 * 26 25 24 28 28 C 1.53016 * 110.69564 * 298.03946 * 27 26 25 29 29 H 1.09003 * 112.98322 * 287.55403 * 28 27 26 30 30 H 1.09002 * 109.47169 * 296.71848 * 1 2 3 31 31 H 1.08998 * 109.47495 * 56.72430 * 1 2 3 32 32 H 1.09001 * 109.46761 * 176.71920 * 1 2 3 33 33 H 1.09006 * 109.90084 * 338.24283 * 4 2 1 34 34 H 1.09005 * 109.90277 * 99.47426 * 4 2 1 35 35 H 0.97002 * 119.99811 * 0.02562 * 10 8 6 36 36 H 1.09000 * 109.47068 * 300.00326 * 11 10 8 37 37 H 1.08999 * 109.46719 * 60.00489 * 11 10 8 38 38 H 1.08993 * 109.46962 * 299.99922 * 12 11 10 39 39 H 1.08999 * 109.47338 * 60.00564 * 12 11 10 40 40 H 1.09000 * 109.47125 * 300.00041 * 13 12 11 41 41 H 1.08999 * 109.46689 * 60.00220 * 13 12 11 42 42 H 0.96996 * 119.99382 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.12532 * 54.08022 * 24 22 5 44 44 H 1.09001 * 109.12659 * 173.17484 * 24 22 5 45 45 H 1.09001 * 109.67704 * 181.05840 * 25 24 22 46 46 H 1.08996 * 109.67937 * 60.51979 * 25 24 22 47 47 H 1.08993 * 109.60303 * 303.43245 * 26 25 24 48 48 H 1.08998 * 109.73530 * 183.01645 * 26 25 24 49 49 H 1.09008 * 109.23111 * 177.72884 * 27 26 25 50 50 H 1.09000 * 109.20292 * 58.33598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0821 -0.7940 -1.2047 5 7 3.2617 -1.5397 -0.7303 6 6 4.0181 -2.3780 -1.4661 7 8 4.9700 -2.9371 -0.9621 8 6 3.6846 -2.6192 -2.9028 9 8 2.7330 -2.0599 -3.4070 10 7 4.4407 -3.4580 -3.6385 11 6 4.1134 -3.6949 -5.0468 12 6 5.1197 -4.6798 -5.6454 13 6 4.7775 -4.9276 -7.1160 14 6 5.7689 -5.8972 -7.7059 15 1 6.5633 -6.2970 -7.0931 16 6 5.6618 -6.2739 -9.0278 17 7 4.6946 -5.7867 -9.7742 18 14 6.8903 -7.4763 -9.7589 19 1 6.8301 -8.7597 -9.0141 20 1 6.5590 -7.7159 -11.1866 21 1 8.2588 -6.9089 -9.6573 22 6 3.4675 -1.2084 0.6821 23 1 4.1297 -0.3447 0.7416 24 6 4.0957 -2.3366 1.4682 25 6 3.1526 -3.5357 1.5661 26 6 1.8609 -3.0810 2.2543 27 6 1.1850 -2.0285 1.3788 28 6 2.0832 -0.8001 1.2190 29 1 2.1462 -0.1981 2.1255 30 1 -0.3633 0.4620 0.9179 31 1 -0.3634 0.5638 -0.8591 32 1 -0.3633 -1.0260 -0.0588 33 1 1.3256 -1.4892 -1.5690 34 1 2.3722 -0.1075 -2.0001 35 1 5.2012 -3.9054 -3.2354 36 1 3.1091 -4.1118 -5.1212 37 1 4.1573 -2.7528 -5.5933 38 1 6.1241 -4.2632 -5.5710 39 1 5.0754 -5.6217 -5.0988 40 1 3.7730 -5.3444 -7.1900 41 1 4.8214 -3.9858 -7.6629 42 1 4.6192 -6.0520 -10.7041 43 1 5.0169 -2.6462 0.9745 44 1 4.3309 -1.9844 2.4725 45 1 3.6224 -4.3253 2.1525 46 1 2.9250 -3.9062 0.5666 47 1 2.0971 -2.6504 3.2273 48 1 1.1932 -3.9328 2.3835 49 1 0.2443 -1.7279 1.8404 50 1 0.9825 -2.4555 0.3966 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343152958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:39 Heat of formation + Delta-G solvation = -92.364976 kcal Electronic energy + Delta-G solvation = -28032.842338 eV Core-core repulsion = 24251.868504 eV Total energy + Delta-G solvation = -3780.973834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49962 -39.69142 -38.03444 -35.85970 -35.34326 -33.87184 -33.25611 -31.23436 -30.44884 -29.41435 -27.33402 -26.77343 -24.73707 -23.45172 -23.07763 -22.05162 -20.84283 -20.63620 -19.81196 -18.99419 -17.48166 -16.89005 -16.60480 -16.31579 -15.73762 -15.61023 -15.24994 -14.90909 -14.73721 -14.45307 -14.20837 -13.94033 -13.59948 -13.45113 -13.19473 -12.95221 -12.76900 -12.69344 -12.51508 -12.30185 -11.88914 -11.86213 -11.79059 -11.71223 -11.41817 -11.34787 -11.07571 -10.89203 -10.76450 -10.72894 -10.62907 -10.32700 -10.27750 -9.89613 -9.61102 -9.24657 -9.11014 -9.01444 -8.83658 -8.37728 -6.02669 -4.05760 1.47462 2.27595 3.25961 3.32473 3.36966 3.39102 3.47621 4.00553 4.15312 4.28901 4.43585 4.50147 4.65826 4.72678 4.81023 4.90176 4.99907 5.10109 5.13484 5.21284 5.23049 5.30851 5.33211 5.43786 5.48563 5.58298 5.60466 5.65492 5.69682 5.70907 5.76093 5.83098 5.86573 5.89020 5.98444 6.00790 6.08458 6.15262 6.29504 6.32049 6.54517 6.72251 6.95427 7.07037 7.34854 7.61394 7.73393 7.76427 7.95659 8.10345 8.36958 9.00541 9.58573 11.08613 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.002253 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.190623 B =12422.419463 C =13019.031960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.084 0.916 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.524 3.476 7 O -0.518 6.518 8 C 0.500 3.500 9 O -0.523 6.523 10 N -0.692 5.692 11 C 0.115 3.885 12 C -0.122 4.122 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.144 3.856 23 H 0.068 0.932 24 C -0.137 4.137 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.092 4.092 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.410 0.590 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 12.228 26.644 30.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.102 0.898 4 C -0.010 4.010 5 N -0.319 5.319 6 C 0.307 3.693 7 O -0.395 6.395 8 C 0.280 3.720 9 O -0.399 6.399 10 N -0.344 5.344 11 C -0.007 4.007 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.041 3.959 23 H 0.086 0.914 24 C -0.175 4.175 25 C -0.150 4.150 26 C -0.159 4.159 27 C -0.149 4.149 28 C -0.111 4.111 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.943 12.262 26.268 30.058 hybrid contribution 0.983 -0.789 -0.427 1.331 sum -6.961 11.473 25.842 29.118 Atomic orbital electron populations 1.21820 0.93570 1.02661 1.02078 1.22574 0.96724 0.99223 0.94162 0.89779 1.22364 0.87127 0.95298 0.96237 1.48035 1.29469 1.43372 1.10977 1.19984 0.82726 0.79341 0.87213 1.90678 1.28059 1.48521 1.72208 1.19995 0.83912 0.81173 0.86927 1.90741 1.28002 1.48630 1.72562 1.46057 1.31413 1.44246 1.12717 1.21822 1.00447 1.00617 0.77811 1.21924 0.97084 0.96758 1.00278 1.19024 0.97242 0.97166 0.87829 1.21165 1.12982 1.26327 0.95672 0.92629 1.25023 0.95684 0.96475 0.97248 1.69955 1.31755 1.44076 1.07560 0.86634 0.81595 0.81561 0.78058 1.20214 1.21272 1.20220 1.21177 0.96660 0.97915 0.80141 0.91395 1.21573 1.01096 0.94904 0.99898 1.21445 0.95380 0.97390 1.00745 1.21575 0.97122 0.98483 0.98727 1.21588 0.97972 0.94775 1.00613 1.22486 0.93806 0.96925 0.97899 0.88191 0.92119 0.92186 0.91769 0.90092 0.90333 0.75385 0.91194 0.91174 0.92453 0.92462 0.96222 0.96221 0.92859 0.88290 0.91342 0.91916 0.92277 0.91974 0.92052 0.91587 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.29 37.16 0.31 -0.52 16 2 C -0.11 -0.73 3.35 -88.26 -0.30 -1.03 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.11 1.11 4.34 -2.77 -0.01 1.10 16 5 N -0.58 -6.54 2.99 -165.43 -0.50 -7.04 16 6 C 0.52 7.21 7.18 -11.59 -0.08 7.13 16 7 O -0.52 -7.72 13.97 5.50 0.08 -7.64 16 8 C 0.50 7.68 7.86 -11.59 -0.09 7.59 16 9 O -0.52 -8.85 14.19 5.49 0.08 -8.77 16 10 N -0.69 -10.60 5.55 -60.73 -0.34 -10.94 16 11 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 12 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 13 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.14 1.29 2.85 -68.32 -0.19 1.10 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 C -0.14 -1.28 4.82 -27.72 -0.13 -1.41 16 25 C -0.11 -1.04 5.86 -26.67 -0.16 -1.20 16 26 C -0.12 -0.89 5.93 -26.76 -0.16 -1.05 16 27 C -0.11 -0.79 3.67 -26.89 -0.10 -0.89 16 28 C -0.09 -0.61 3.50 -88.52 -0.31 -0.92 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.40 6.22 -51.93 -0.32 0.08 16 33 H 0.08 0.89 6.90 -51.93 -0.36 0.53 16 34 H 0.08 0.85 7.74 -51.93 -0.40 0.44 16 35 H 0.41 5.77 7.94 -40.82 -0.32 5.45 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 1.17 5.65 -51.93 -0.29 0.88 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.38 7.42 -51.92 -0.39 0.00 16 50 H 0.07 0.58 6.26 -51.93 -0.33 0.26 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -31.01 382.79 -9.82 -40.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.68 Total: 0.87 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.94 Total: -3.58 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.10 Total: -44.01 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.15 Total: -16.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.01 -9.82 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343152958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.537 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds