Wall clock time and date at job start Tue Mar 31 2020 14:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.34518 * 125.78983 * 89.71495 * 6 5 4 8 8 C 1.41378 * 106.84364 * 179.89403 * 7 6 5 9 9 C 1.34522 * 106.83917 * 0.37066 * 8 7 6 10 10 O 1.34302 * 108.41941 * 359.77436 * 9 8 7 11 11 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 12 12 C 1.34775 * 119.99962 * 85.00055 * 11 2 1 13 13 O 1.21587 * 119.99912 * 0.02562 * 12 11 2 14 14 N 1.34780 * 119.99894 * 179.97438 * 12 11 2 15 15 C 1.46502 * 119.99520 * 179.97438 * 14 12 11 16 16 C 1.53009 * 109.46657 * 180.02562 * 15 14 12 17 17 C 1.52993 * 109.47129 * 300.00529 * 16 15 14 18 18 C 1.53005 * 109.46620 * 60.00325 * 16 15 14 19 19 C 1.53000 * 109.46867 * 180.02562 * 16 15 14 20 20 C 1.50703 * 109.46924 * 180.02562 * 19 16 15 21 21 H 1.08003 * 119.99575 * 0.02562 * 20 19 16 22 22 C 1.37873 * 120.00014 * 180.02562 * 20 19 16 23 23 N 1.31519 * 120.00032 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47055 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47052 * 119.99765 * 24 22 20 27 27 H 1.48497 * 109.46862 * 240.00030 * 24 22 20 28 28 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 29 29 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 30 30 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 32 32 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 35 35 H 1.08002 * 126.57753 * 0.02827 * 7 6 5 36 36 H 1.07997 * 126.58088 * 180.16594 * 8 7 6 37 37 H 1.07992 * 125.79127 * 179.79596 * 9 8 7 38 38 H 0.96998 * 119.99659 * 264.99982 * 11 2 1 39 39 H 0.96998 * 119.99727 * 0.02562 * 14 12 11 40 40 H 1.08993 * 109.47669 * 300.00256 * 15 14 12 41 41 H 1.09000 * 109.47236 * 60.00947 * 15 14 12 42 42 H 1.08998 * 109.47610 * 59.99789 * 17 16 15 43 43 H 1.09008 * 109.46928 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47183 * 299.99579 * 17 16 15 45 45 H 1.08993 * 109.47376 * 60.00215 * 18 16 15 46 46 H 1.09008 * 109.46813 * 179.97438 * 18 16 15 47 47 H 1.08998 * 109.47123 * 299.99602 * 18 16 15 48 48 H 1.08996 * 109.47192 * 300.00426 * 19 16 15 49 49 H 1.09000 * 109.47160 * 60.00596 * 19 16 15 50 50 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 6 4.4141 -2.6217 2.6162 8 6 4.8266 -2.8620 3.9469 9 6 4.6994 -1.6988 4.6104 10 8 4.2390 -0.7708 3.7557 11 7 2.0184 -0.6906 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8584 1.1615 -2.4116 14 7 2.5969 -0.6536 -3.4574 15 6 2.7362 0.0772 -4.7195 16 6 3.2607 -0.8691 -5.8014 17 6 4.6233 -1.4217 -5.3787 18 6 2.2768 -2.0259 -5.9878 19 6 3.4069 -0.1059 -7.1193 20 6 3.9229 -1.0381 -8.1851 21 1 4.1259 -2.0716 -7.9463 22 6 4.1359 -0.5715 -9.4649 23 7 3.8883 0.6870 -9.7557 24 14 4.7749 -1.7271 -10.7861 25 1 4.9715 -3.0804 -10.2072 26 1 3.7917 -1.8013 -11.8966 27 1 6.0699 -1.2182 -11.3048 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -0.2616 2.1370 32 1 1.7517 -1.7715 1.2057 33 1 3.9995 -1.0727 0.4261 34 1 3.8532 0.4370 1.3574 35 1 4.3852 -3.3413 1.8113 36 1 5.1738 -3.8003 4.3536 37 1 4.9289 -1.5383 5.6534 38 1 2.2491 -1.6318 -1.1525 39 1 2.8275 -1.5947 -3.4138 40 1 1.7654 0.4704 -5.0208 41 1 3.4369 0.9015 -4.5866 42 1 4.5196 -1.9653 -4.4397 43 1 4.9968 -2.0962 -6.1493 44 1 5.3243 -0.5976 -5.2459 45 1 1.3060 -1.6323 -6.2889 46 1 2.6502 -2.6999 -6.7589 47 1 2.1731 -2.5696 -5.0487 48 1 2.4363 0.2881 -7.4206 49 1 4.1081 0.7180 -6.9862 50 1 4.0378 1.0152 -10.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558369301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:05 Heat of formation + Delta-G solvation = -66.535406 kcal Electronic energy + Delta-G solvation = -26997.562304 eV Core-core repulsion = 23217.708524 eV Total energy + Delta-G solvation = -3779.853780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.43057 -41.18257 -38.97249 -37.51429 -35.19668 -34.39107 -33.93370 -33.41541 -31.48629 -29.03047 -28.85727 -27.92689 -27.43280 -25.16120 -24.67886 -22.62791 -22.35465 -21.61097 -21.20342 -20.16172 -19.01241 -18.35241 -18.18915 -17.40400 -16.90045 -16.56205 -16.46650 -15.90401 -15.63120 -15.40604 -15.26923 -14.86497 -14.65649 -14.56196 -14.29103 -13.94119 -13.91628 -13.70266 -13.68635 -13.40238 -13.12407 -12.89625 -12.87736 -12.68209 -12.57951 -12.43431 -12.31592 -12.20659 -12.11014 -11.92151 -11.70018 -11.50611 -11.31581 -10.94619 -10.81853 -10.80262 -10.50796 -10.30488 -9.70892 -9.30228 -8.12592 -6.20231 0.85236 1.42695 1.43623 1.55387 1.75426 1.79094 2.16660 2.25100 2.45410 3.21873 3.40527 3.62104 3.97462 4.01727 4.04056 4.13245 4.15171 4.21015 4.26375 4.36685 4.46153 4.60004 4.68878 4.72380 4.77592 4.80135 4.83636 4.88482 4.99984 5.00527 5.04916 5.12901 5.14981 5.15651 5.20484 5.31322 5.35821 5.44311 5.52633 5.53138 5.57386 5.63208 5.65793 5.68246 5.83678 5.92138 6.10284 6.26942 6.33013 6.95287 7.21086 7.47407 7.68942 9.00104 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.002116 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.606809 B =13230.319734 C =14132.656769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.106 4.106 5 C -0.039 4.039 6 C -0.023 4.023 7 C -0.222 4.222 8 C -0.228 4.228 9 C -0.051 4.051 10 O -0.197 6.197 11 N -0.726 5.726 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.725 5.725 15 C 0.163 3.837 16 C -0.063 4.063 17 C -0.120 4.120 18 C -0.120 4.120 19 C 0.039 3.961 20 C -0.510 4.510 21 H 0.074 0.926 22 C -0.008 4.008 23 N -0.939 5.939 24 Si 0.959 3.041 25 H -0.256 1.256 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.231 0.769 38 H 0.411 0.589 39 H 0.410 0.590 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.055 0.945 47 H 0.071 0.929 48 H -0.015 1.015 49 H -0.015 1.015 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -10.631 29.589 31.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.076 4.076 6 C -0.073 4.073 7 C -0.241 4.241 8 C -0.247 4.247 9 C -0.118 4.118 10 O -0.094 6.094 11 N -0.383 5.383 12 C 0.398 3.602 13 O -0.523 6.523 14 N -0.381 5.381 15 C 0.038 3.962 16 C -0.064 4.064 17 C -0.177 4.177 18 C -0.178 4.178 19 C 0.001 3.999 20 C -0.549 4.549 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.580 5.580 24 Si 0.785 3.215 25 H -0.179 1.179 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.247 0.753 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.004 0.996 49 H 0.004 0.996 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.006 -9.163 29.481 30.937 hybrid contribution 0.579 -0.716 -1.249 1.552 sum -1.427 -9.879 28.232 29.944 Atomic orbital electron populations 1.22153 0.94946 1.02803 1.01948 1.20813 0.94106 0.96542 0.82832 0.91500 1.21804 0.93415 1.02523 0.96670 1.20167 0.96201 1.00514 0.90698 1.22721 1.05001 0.93521 0.86059 1.21922 1.06908 0.96172 0.99085 1.22188 1.07491 1.00510 0.94537 1.24717 1.02808 0.87167 0.97089 1.84019 1.65885 1.40167 1.19286 1.45063 1.71272 1.14138 1.07815 1.16179 0.78110 0.84660 0.81243 1.90894 1.59122 1.16820 1.85420 1.45008 1.70436 1.14328 1.08355 1.21007 0.99148 0.93968 0.82113 1.20701 0.96482 0.95564 0.93641 1.21680 0.95086 1.00291 1.00681 1.21684 0.97483 0.97203 1.01392 1.18983 0.94480 0.94535 0.91895 1.21628 1.41842 0.96997 0.94384 0.90823 1.25978 0.96483 0.96514 1.01511 1.70137 1.50891 1.16305 1.20695 0.85475 0.77542 0.79599 0.78884 1.17933 1.21150 1.21142 0.90238 0.94773 0.91015 0.89278 0.89073 0.88082 0.90793 0.82213 0.81858 0.75259 0.75225 0.75283 0.94154 0.94068 0.91025 0.92649 0.94559 0.94586 0.92627 0.91047 0.99648 0.99632 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.16 2.69 2.57 44.99 0.12 2.81 16 3 H 0.07 1.48 7.58 -2.39 -0.02 1.46 16 4 C -0.11 -1.16 4.74 30.59 0.14 -1.02 16 5 C -0.04 -0.51 5.63 29.85 0.17 -0.35 16 6 C -0.02 -0.37 6.58 24.83 0.16 -0.21 16 7 C -0.22 -3.24 10.81 22.19 0.24 -3.00 16 8 C -0.23 -3.02 10.91 22.19 0.24 -2.77 16 9 C -0.05 -0.65 12.09 66.97 0.81 0.16 16 10 O -0.20 -3.47 10.65 -2.49 -0.03 -3.50 16 11 N -0.73 -12.96 4.53 -457.80 -2.08 -15.03 16 12 C 0.70 19.78 8.53 179.05 1.53 21.31 16 13 O -0.64 -24.88 16.01 -3.99 -0.06 -24.95 16 14 N -0.72 -19.34 4.96 -478.52 -2.37 -21.72 16 15 C 0.16 5.83 4.56 86.38 0.39 6.22 16 16 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 17 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 18 C -0.12 -3.95 8.05 71.98 0.58 -3.38 16 19 C 0.04 1.97 4.04 29.85 0.12 2.09 16 20 C -0.51 -27.26 7.65 25.60 0.20 -27.06 16 21 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 22 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 23 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 24 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.10 1.21 7.75 -2.39 -0.02 1.20 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.23 1.10 8.06 -2.91 -0.02 1.07 16 38 H 0.41 4.48 8.62 -92.71 -0.80 3.68 16 39 H 0.41 8.09 6.18 -92.71 -0.57 7.51 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 43 H 0.05 1.95 6.62 -2.38 -0.02 1.93 16 44 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.96 6.62 -2.38 -0.02 1.94 16 47 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 48 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 49 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 50 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -75.00 402.93 3.73 -71.28 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.44 Total: 18.23 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 6.40 Total: -12.89 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.17 Total: -93.79 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.09 Total: -28.44 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.00 3.73 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558369301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.744 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds