Wall clock time and date at job start Tue Mar 31 2020 14:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47006 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99080 * 2 1 3 5 5 C 1.50702 * 109.47120 * 185.00090 * 4 2 1 6 6 C 1.38270 * 119.94570 * 269.73210 * 5 4 2 7 7 C 1.38139 * 120.05557 * 179.72595 * 6 5 4 8 8 C 1.38736 * 119.94312 * 0.56638 * 7 6 5 9 9 O 1.35897 * 120.05385 * 179.67891 * 8 7 6 10 10 C 1.38729 * 119.88737 * 359.70761 * 8 7 6 11 11 C 1.38149 * 119.94760 * 359.97438 * 10 8 7 12 12 N 1.46898 * 109.47299 * 239.99840 * 2 1 3 13 13 C 1.46894 * 111.00382 * 84.99752 * 12 2 1 14 14 C 1.52994 * 109.47465 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.47063 * 59.99995 * 14 13 12 16 16 O 1.42906 * 109.47160 * 300.00285 * 14 13 12 17 17 C 1.52998 * 109.47318 * 179.97438 * 14 13 12 18 18 N 1.46907 * 109.47286 * 180.46237 * 17 14 13 19 19 C 1.46895 * 111.00149 * 199.84985 * 18 17 14 20 20 C 1.46905 * 110.99897 * 75.89459 * 18 17 14 21 21 C 1.50697 * 109.47101 * 190.00086 * 20 18 17 22 22 H 1.07998 * 119.99687 * 0.02562 * 21 20 18 23 23 C 1.37877 * 119.99894 * 180.02562 * 21 20 18 24 24 N 1.31514 * 120.00051 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00056 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46926 * 59.99829 * 25 23 21 27 27 H 1.48499 * 109.47238 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46714 * 299.99921 * 25 23 21 29 29 H 1.09001 * 109.47153 * 60.00673 * 1 2 3 30 30 H 1.09003 * 109.47317 * 300.00364 * 1 2 3 31 31 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47235 * 305.00178 * 4 2 1 33 33 H 1.09000 * 109.46722 * 65.00558 * 4 2 1 34 34 H 1.08002 * 119.96848 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.02633 * 180.25090 * 7 6 5 36 36 H 0.96693 * 114.00298 * 270.02408 * 9 8 7 37 37 H 1.08001 * 120.03118 * 179.97438 * 10 8 7 38 38 H 1.07991 * 119.97199 * 180.02562 * 11 10 8 39 39 H 1.00897 * 110.99752 * 208.95263 * 12 2 1 40 40 H 1.08998 * 109.47313 * 300.00331 * 13 12 2 41 41 H 1.09000 * 109.46984 * 59.99953 * 13 12 2 42 42 H 0.96701 * 113.99437 * 299.99817 * 16 14 13 43 43 H 1.08998 * 109.47189 * 300.46007 * 17 14 13 44 44 H 1.08996 * 109.47334 * 60.46346 * 17 14 13 45 45 H 1.09001 * 109.46618 * 64.82117 * 19 18 17 46 46 H 1.08998 * 109.46722 * 184.82161 * 19 18 17 47 47 H 1.09001 * 109.47273 * 304.82505 * 19 18 17 48 48 H 1.08998 * 109.47000 * 310.00446 * 20 18 17 49 49 H 1.09002 * 109.46947 * 70.00260 * 20 18 17 50 50 H 0.96999 * 120.00054 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6147 1.3128 6 6 4.3283 -1.5852 0.7199 7 6 5.7052 -1.4870 0.7718 8 6 6.2990 -0.4196 1.4297 9 8 7.6534 -0.3242 1.4878 10 6 5.5078 0.5499 2.0287 11 6 4.1312 0.4506 1.9683 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2224 -2.3469 14 6 2.5950 -0.5334 -3.5744 15 1 1.9183 -1.3568 -3.8028 16 8 3.9000 -1.0500 -3.3051 17 6 2.6598 0.4195 -4.7697 18 7 3.1415 -0.3089 -5.9511 19 6 3.6612 0.6179 -6.9653 20 6 2.0848 -1.1627 -6.5102 21 6 2.6749 -2.0714 -7.5575 22 1 3.7294 -2.0202 -7.7848 23 6 1.8684 -2.9682 -8.2256 24 7 0.5841 -3.0302 -7.9492 25 14 2.5999 -4.0952 -9.5234 26 1 3.6482 -4.9465 -8.9057 27 1 1.5317 -4.9582 -10.0887 28 1 3.2014 -3.2772 -10.6071 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2615 2.1370 33 1 1.7517 -1.7713 1.2058 34 1 3.8655 -2.4187 0.2123 35 1 6.3189 -2.2432 0.3051 36 1 8.0458 -0.7605 2.2562 37 1 5.9676 1.3816 2.5418 38 1 3.5149 1.2052 2.4341 39 1 2.9173 -1.1205 -1.0286 40 1 1.0871 0.6161 -2.5526 41 1 2.7588 1.0461 -2.1183 42 1 4.5556 -0.3714 -3.0935 43 1 1.6658 0.8194 -4.9698 44 1 3.3426 1.2388 -4.5447 45 1 4.5420 1.1274 -6.5745 46 1 3.9316 0.0606 -7.8621 47 1 2.8954 1.3535 -7.2117 48 1 1.6440 -1.7633 -5.7145 49 1 1.3148 -0.5381 -6.9631 50 1 0.0168 -3.6614 -8.4190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565300569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:59 Heat of formation + Delta-G solvation = -72.017644 kcal Electronic energy + Delta-G solvation = -27538.099189 eV Core-core repulsion = 23758.007681 eV Total energy + Delta-G solvation = -3780.091507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16958 -38.47643 -37.53444 -36.22563 -35.24126 -32.45411 -32.25318 -31.26245 -30.32950 -28.92877 -27.22088 -26.34170 -25.26696 -23.37112 -23.07368 -21.95369 -21.32407 -20.52627 -19.89530 -18.67640 -16.61899 -16.33495 -16.24292 -16.07986 -15.84090 -15.51709 -15.16680 -14.71582 -14.60510 -14.36667 -14.05370 -13.70854 -13.68743 -13.31539 -13.06168 -12.72701 -12.62745 -12.44051 -12.41839 -12.12179 -11.91805 -11.84964 -11.61790 -11.38471 -11.21900 -11.08072 -10.89288 -10.83789 -10.70563 -10.64884 -10.57272 -10.28573 -9.70131 -9.54350 -9.24817 -9.08442 -8.71138 -8.37737 -8.35383 -7.14273 -5.96041 -3.96439 0.94153 1.09163 3.33427 3.38505 3.42005 3.45791 3.94533 4.04956 4.48645 4.48987 4.59061 4.73011 4.77635 4.85760 4.99106 5.08179 5.15401 5.20851 5.31021 5.34483 5.39549 5.47892 5.50667 5.58546 5.59301 5.69720 5.74008 5.77489 5.79995 5.89235 5.92249 6.04624 6.09227 6.18097 6.18296 6.21960 6.34876 6.36704 6.55992 6.61120 6.76996 7.06902 7.35028 7.37710 7.38029 7.49045 7.86030 8.12260 8.18124 8.27937 8.62243 9.10468 9.67004 11.15039 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.002721 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.026805 B =10286.232278 C =11085.228344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.041 0.959 4 C -0.085 4.085 5 C -0.095 4.095 6 C -0.098 4.098 7 C -0.136 4.136 8 C 0.098 3.902 9 O -0.500 6.500 10 C -0.145 4.145 11 C -0.103 4.103 12 N -0.680 5.680 13 C 0.030 3.970 14 C 0.117 3.883 15 H 0.110 0.890 16 O -0.540 6.540 17 C 0.027 3.973 18 N -0.530 5.530 19 C 0.038 3.962 20 C 0.193 3.807 21 C -0.504 4.504 22 H 0.062 0.938 23 C 0.054 3.946 24 N -0.900 5.900 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.388 0.612 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.349 0.651 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.358 0.642 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.007 0.993 48 H 0.032 0.968 49 H -0.012 1.012 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 8.428 23.867 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 H 0.059 0.941 4 C -0.122 4.122 5 C -0.096 4.096 6 C -0.116 4.116 7 C -0.154 4.154 8 C 0.054 3.946 9 O -0.310 6.310 10 C -0.164 4.164 11 C -0.121 4.121 12 N -0.316 5.316 13 C -0.100 4.100 14 C 0.057 3.943 15 H 0.128 0.872 16 O -0.342 6.342 17 C -0.103 4.103 18 N -0.254 5.254 19 C -0.111 4.111 20 C 0.068 3.932 21 C -0.543 4.543 22 H 0.080 0.920 23 C -0.146 4.146 24 N -0.540 5.540 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.214 1.214 28 H -0.204 1.204 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.244 0.756 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.171 0.829 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.203 0.797 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.025 0.975 48 H 0.050 0.950 49 H 0.005 0.995 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.072 7.513 23.143 24.855 hybrid contribution 0.704 0.854 -0.279 1.142 sum 5.776 8.367 22.864 25.023 Atomic orbital electron populations 1.21808 0.94255 1.02659 1.01166 1.21494 0.95866 0.95652 0.89208 0.94095 1.20847 0.90487 1.02740 0.98160 1.19998 0.96024 0.95141 0.98392 1.21100 0.92999 0.99044 0.98468 1.21493 0.95367 0.98062 1.00516 1.18511 0.82883 0.94622 0.98609 1.84847 1.16719 1.79216 1.50192 1.21394 0.93947 0.99880 1.01162 1.20915 0.94086 0.97761 0.99327 1.60506 1.34734 1.32710 1.03629 1.22703 1.01149 0.93939 0.92242 1.21962 0.85026 0.97159 0.90161 0.87197 1.86685 1.19172 1.36461 1.91905 1.22660 0.98395 0.95613 0.93664 1.62027 1.37828 1.20028 1.05542 1.22224 0.97302 0.94763 0.96804 1.19765 0.87754 0.91109 0.94606 1.21119 0.95184 1.18725 1.19250 0.91959 1.24980 0.94818 0.97390 0.97455 1.69949 1.04321 1.37185 1.42518 0.86567 0.78622 0.80644 0.81607 1.20126 1.21407 1.20373 0.92502 0.92826 0.91692 0.90275 0.89744 0.84818 0.85097 0.75615 0.85638 0.85814 0.82857 0.90429 0.95611 0.79723 0.94964 0.92460 0.93844 0.90470 0.97469 0.95009 0.99458 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.41 37.16 0.35 -1.01 16 2 C 0.09 0.89 2.64 -67.71 -0.18 0.71 16 3 H 0.04 0.43 7.80 -51.93 -0.40 0.02 16 4 C -0.08 -0.73 4.98 -27.88 -0.14 -0.87 16 5 C -0.10 -0.89 4.84 -104.60 -0.51 -1.39 16 6 C -0.10 -0.98 8.03 -39.61 -0.32 -1.29 16 7 C -0.14 -1.36 9.99 -39.43 -0.39 -1.75 16 8 C 0.10 0.96 6.70 -39.22 -0.26 0.69 16 9 O -0.50 -4.46 13.50 -19.42 -0.26 -4.72 16 10 C -0.15 -1.30 9.99 -39.43 -0.39 -1.69 16 11 C -0.10 -0.89 9.69 -39.60 -0.38 -1.27 16 12 N -0.68 -8.66 6.31 -106.73 -0.67 -9.34 16 13 C 0.03 0.40 5.19 -3.83 -0.02 0.38 16 14 C 0.12 1.98 3.30 -26.74 -0.09 1.90 16 15 H 0.11 2.25 6.78 -51.93 -0.35 1.90 16 16 O -0.54 -9.33 12.55 -35.23 -0.44 -9.77 16 17 C 0.03 0.48 4.66 -3.82 -0.02 0.46 16 18 N -0.53 -11.80 4.56 -244.37 -1.11 -12.91 16 19 C 0.04 0.76 9.37 60.06 0.56 1.32 16 20 C 0.19 5.17 4.55 -4.97 -0.02 5.14 16 21 C -0.50 -14.61 8.39 -34.44 -0.29 -14.90 16 22 H 0.06 1.79 7.17 -52.49 -0.38 1.42 16 23 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 24 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 25 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.13 1.32 7.55 -52.49 -0.40 0.93 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.39 1.51 9.06 45.56 0.41 1.92 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.35 4.49 4.91 -39.29 -0.19 4.29 16 40 H 0.08 1.04 7.44 -51.93 -0.39 0.65 16 41 H 0.03 0.32 8.06 -51.93 -0.42 -0.09 16 42 H 0.36 4.98 9.05 45.56 0.41 5.40 16 43 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 44 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.67 6.66 -51.93 -0.35 1.33 16 47 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 48 H 0.03 0.91 6.63 -51.93 -0.34 0.57 16 49 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 402.06 15.07 6.06 6.06 Total: -1.00 -33.58 402.06 -9.88 -43.45 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.96 Total: 8.68 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.20 Total: -12.08 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -1.05 Total: -48.83 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.70 Total: -14.49 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.58 -9.88 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565300569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.563 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds