Wall clock time and date at job start Tue Mar 31 2020 14:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47006 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99080 * 2 1 3 5 5 C 1.50702 * 109.47120 * 185.00090 * 4 2 1 6 6 C 1.38270 * 119.94570 * 269.73210 * 5 4 2 7 7 C 1.38139 * 120.05557 * 179.72595 * 6 5 4 8 8 C 1.38736 * 119.94312 * 0.56638 * 7 6 5 9 9 O 1.35897 * 120.05385 * 179.67891 * 8 7 6 10 10 C 1.38729 * 119.88737 * 359.70761 * 8 7 6 11 11 C 1.38149 * 119.94760 * 359.97438 * 10 8 7 12 12 N 1.46898 * 109.47299 * 239.99840 * 2 1 3 13 13 C 1.46894 * 111.00382 * 84.99752 * 12 2 1 14 14 C 1.52994 * 109.47465 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.47063 * 59.99995 * 14 13 12 16 16 O 1.42906 * 109.47160 * 300.00285 * 14 13 12 17 17 C 1.52998 * 109.47318 * 179.97438 * 14 13 12 18 18 N 1.46907 * 109.47286 * 180.46237 * 17 14 13 19 19 C 1.46895 * 111.00149 * 199.84985 * 18 17 14 20 20 C 1.46905 * 110.99897 * 75.89459 * 18 17 14 21 21 C 1.50697 * 109.47101 * 190.00086 * 20 18 17 22 22 H 1.07998 * 119.99687 * 0.02562 * 21 20 18 23 23 C 1.37877 * 119.99894 * 180.02562 * 21 20 18 24 24 N 1.31514 * 120.00051 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00056 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46926 * 59.99829 * 25 23 21 27 27 H 1.48499 * 109.47238 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46714 * 299.99921 * 25 23 21 29 29 H 1.09001 * 109.47153 * 60.00673 * 1 2 3 30 30 H 1.09003 * 109.47317 * 300.00364 * 1 2 3 31 31 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47235 * 305.00178 * 4 2 1 33 33 H 1.09000 * 109.46722 * 65.00558 * 4 2 1 34 34 H 1.08002 * 119.96848 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.02633 * 180.25090 * 7 6 5 36 36 H 0.96693 * 114.00298 * 270.02408 * 9 8 7 37 37 H 1.08001 * 120.03118 * 179.97438 * 10 8 7 38 38 H 1.07991 * 119.97199 * 180.02562 * 11 10 8 39 39 H 1.00897 * 110.99752 * 208.95263 * 12 2 1 40 40 H 1.08998 * 109.47313 * 300.00331 * 13 12 2 41 41 H 1.09000 * 109.46984 * 59.99953 * 13 12 2 42 42 H 0.96701 * 113.99437 * 299.99817 * 16 14 13 43 43 H 1.08998 * 109.47189 * 300.46007 * 17 14 13 44 44 H 1.08996 * 109.47334 * 60.46346 * 17 14 13 45 45 H 1.09001 * 109.46618 * 64.82117 * 19 18 17 46 46 H 1.08998 * 109.46722 * 184.82161 * 19 18 17 47 47 H 1.09001 * 109.47273 * 304.82505 * 19 18 17 48 48 H 1.08998 * 109.47000 * 310.00446 * 20 18 17 49 49 H 1.09002 * 109.46947 * 70.00260 * 20 18 17 50 50 H 0.96999 * 120.00054 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6147 1.3128 6 6 4.3283 -1.5852 0.7199 7 6 5.7052 -1.4870 0.7718 8 6 6.2990 -0.4196 1.4297 9 8 7.6534 -0.3242 1.4878 10 6 5.5078 0.5499 2.0287 11 6 4.1312 0.4506 1.9683 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2224 -2.3469 14 6 2.5950 -0.5334 -3.5744 15 1 1.9183 -1.3568 -3.8028 16 8 3.9000 -1.0500 -3.3051 17 6 2.6598 0.4195 -4.7697 18 7 3.1415 -0.3089 -5.9511 19 6 3.6612 0.6179 -6.9653 20 6 2.0848 -1.1627 -6.5102 21 6 2.6749 -2.0714 -7.5575 22 1 3.7294 -2.0202 -7.7848 23 6 1.8684 -2.9682 -8.2256 24 7 0.5841 -3.0302 -7.9492 25 14 2.5999 -4.0952 -9.5234 26 1 3.6482 -4.9465 -8.9057 27 1 1.5317 -4.9582 -10.0887 28 1 3.2014 -3.2772 -10.6071 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2615 2.1370 33 1 1.7517 -1.7713 1.2058 34 1 3.8655 -2.4187 0.2123 35 1 6.3189 -2.2432 0.3051 36 1 8.0458 -0.7605 2.2562 37 1 5.9676 1.3816 2.5418 38 1 3.5149 1.2052 2.4341 39 1 2.9173 -1.1205 -1.0286 40 1 1.0871 0.6161 -2.5526 41 1 2.7588 1.0461 -2.1183 42 1 4.5556 -0.3714 -3.0935 43 1 1.6658 0.8194 -4.9698 44 1 3.3426 1.2388 -4.5447 45 1 4.5420 1.1274 -6.5745 46 1 3.9316 0.0606 -7.8621 47 1 2.8954 1.3535 -7.2117 48 1 1.6440 -1.7633 -5.7145 49 1 1.3148 -0.5381 -6.9631 50 1 0.0168 -3.6614 -8.4190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565300569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:58 Heat of formation + Delta-G solvation = -98.843178 kcal Electronic energy + Delta-G solvation = -27539.262431 eV Core-core repulsion = 23758.007681 eV Total energy + Delta-G solvation = -3781.254750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86931 -39.67452 -38.54346 -37.37542 -36.55999 -34.60486 -33.24568 -31.94686 -31.24079 -30.22435 -29.23507 -27.17417 -26.63228 -25.15229 -23.79359 -22.96962 -22.45692 -21.82960 -21.11893 -19.33858 -18.61126 -17.58263 -17.32250 -16.90940 -16.85629 -16.59272 -16.32473 -16.18589 -16.03316 -15.49353 -15.36723 -15.02302 -14.82529 -14.36725 -14.17544 -13.97180 -13.89875 -13.46860 -13.42643 -13.25774 -13.14847 -12.96940 -12.87928 -12.66367 -12.57499 -12.52127 -12.32808 -12.31113 -12.17478 -11.97784 -11.67206 -11.51403 -11.35969 -11.33931 -10.76727 -10.60057 -9.94772 -9.40614 -9.32111 -8.95428 -8.19736 -6.29390 0.25916 0.39875 1.39731 1.44003 1.51600 2.40643 2.66237 2.96119 3.12696 3.33581 3.45538 3.68164 3.80308 3.92074 3.97430 4.03960 4.09192 4.17745 4.31220 4.37534 4.41213 4.45988 4.51047 4.54654 4.58969 4.62304 4.74849 4.76257 4.83347 4.93125 4.98439 5.00015 5.07277 5.10341 5.11785 5.17772 5.25326 5.30074 5.36252 5.45304 5.49101 5.64591 5.65765 5.92065 6.06437 6.15371 6.34736 6.51044 6.64145 6.86011 6.87327 6.97979 7.39711 8.91374 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.002721 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.026805 B =10286.232278 C =11085.228344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.046 0.954 4 C -0.079 4.079 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.151 4.151 8 C 0.092 3.908 9 O -0.513 6.513 10 C -0.150 4.150 11 C -0.101 4.101 12 N -0.696 5.696 13 C 0.044 3.956 14 C 0.126 3.874 15 H 0.064 0.936 16 O -0.556 6.556 17 C 0.027 3.973 18 N -0.541 5.541 19 C 0.039 3.961 20 C 0.211 3.789 21 C -0.524 4.524 22 H 0.061 0.939 23 C 0.000 4.000 24 N -0.935 5.935 25 Si 0.969 3.031 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.266 1.266 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.408 0.592 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.348 0.652 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.374 0.626 43 H 0.028 0.972 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.012 0.988 48 H 0.003 0.997 49 H -0.041 1.041 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 9.763 24.999 27.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.126 4.126 7 C -0.170 4.170 8 C 0.047 3.953 9 O -0.326 6.326 10 C -0.168 4.168 11 C -0.119 4.119 12 N -0.332 5.332 13 C -0.086 4.086 14 C 0.066 3.934 15 H 0.083 0.917 16 O -0.361 6.361 17 C -0.102 4.102 18 N -0.265 5.265 19 C -0.109 4.109 20 C 0.084 3.916 21 C -0.562 4.562 22 H 0.079 0.921 23 C -0.198 4.198 24 N -0.575 5.575 25 Si 0.793 3.207 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.190 1.190 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.267 0.733 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.222 0.778 43 H 0.046 0.954 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.031 0.969 48 H 0.021 0.979 49 H -0.024 1.024 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.222 8.868 24.302 26.608 hybrid contribution 0.401 0.469 -0.560 0.833 sum 6.623 9.337 23.742 26.358 Atomic orbital electron populations 1.21809 0.93949 1.02173 1.01809 1.21558 0.96013 0.95783 0.88694 0.93562 1.20814 0.90149 1.02414 0.98219 1.20086 0.96265 0.95249 0.98507 1.21115 0.93194 0.99345 0.98960 1.21571 0.95518 0.98630 1.01275 1.18639 0.83321 0.94698 0.98608 1.84784 1.16464 1.79648 1.51730 1.21619 0.94166 1.00038 1.01007 1.21178 0.94261 0.97763 0.98671 1.60503 1.34856 1.33263 1.04551 1.22473 1.01285 0.93865 0.91011 1.21692 0.84467 0.95651 0.91566 0.91745 1.86643 1.19670 1.37738 1.92011 1.22770 0.98941 0.96329 0.92148 1.61942 1.36214 1.21409 1.06967 1.22244 0.98686 0.94205 0.95781 1.19365 0.88102 0.90969 0.93146 1.21443 0.95231 1.19493 1.20056 0.92118 1.25925 0.95167 0.98941 0.99720 1.70082 1.05739 1.38006 1.43702 0.85443 0.77942 0.78486 0.78791 1.19547 1.20668 1.19044 0.93661 0.90373 0.92752 0.87926 0.90406 0.85660 0.85296 0.73271 0.84037 0.83569 0.83016 0.90416 0.93693 0.77837 0.95370 0.88948 0.90199 0.92596 0.96945 0.97936 1.02384 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.41 71.98 0.68 -1.83 16 2 C 0.09 1.67 2.64 44.92 0.12 1.78 16 3 H 0.05 0.84 7.80 -2.38 -0.02 0.82 16 4 C -0.08 -1.21 4.98 29.85 0.15 -1.06 16 5 C -0.10 -1.72 4.84 -19.85 -0.10 -1.82 16 6 C -0.11 -2.12 8.03 22.25 0.18 -1.94 16 7 C -0.15 -2.99 9.99 22.37 0.22 -2.77 16 8 C 0.09 1.68 6.70 22.51 0.15 1.83 16 9 O -0.51 -8.51 13.50 -92.39 -1.25 -9.76 16 10 C -0.15 -2.36 9.99 22.37 0.22 -2.14 16 11 C -0.10 -1.49 9.69 22.25 0.22 -1.28 16 12 N -0.70 -17.45 6.31 -491.59 -3.10 -20.55 16 13 C 0.04 1.15 5.19 86.30 0.45 1.60 16 14 C 0.13 4.35 3.30 30.59 0.10 4.45 16 15 H 0.06 2.82 6.78 -2.39 -0.02 2.80 16 16 O -0.56 -19.15 12.55 -148.98 -1.87 -21.02 16 17 C 0.03 0.97 4.66 86.30 0.40 1.37 16 18 N -0.54 -24.25 4.56 -927.05 -4.23 -28.47 16 19 C 0.04 1.53 9.37 127.69 1.20 2.73 16 20 C 0.21 11.75 4.55 85.56 0.39 12.14 16 21 C -0.52 -31.09 8.39 25.60 0.21 -30.87 16 22 H 0.06 3.54 7.17 -2.91 -0.02 3.52 16 23 C 0.00 0.02 5.46 84.65 0.46 0.48 16 24 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 25 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.13 2.59 7.55 -2.91 -0.02 2.56 16 35 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.41 2.64 9.06 -74.06 -0.67 1.97 16 37 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.15 1.46 8.06 -2.92 -0.02 1.44 16 39 H 0.35 8.88 4.91 -89.70 -0.44 8.44 16 40 H 0.08 2.04 7.44 -2.39 -0.02 2.02 16 41 H 0.05 1.02 8.06 -2.39 -0.02 1.00 16 42 H 0.37 9.92 9.05 -74.06 -0.67 9.25 16 43 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 44 H 0.09 2.64 7.94 -2.39 -0.02 2.62 16 45 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.06 2.41 6.66 -2.39 -0.02 2.40 16 47 H 0.01 0.46 8.13 -2.39 -0.02 0.44 16 48 H 0.00 0.16 6.63 -2.39 -0.02 0.14 16 49 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 50 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -73.88 402.06 -3.92 -77.80 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.84 Total: 29.29 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 5.05 Total: -17.32 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -7.04 Total: -106.90 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -3.12 Total: -30.78 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.88 -3.92 -77.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565300569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.045 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds