Wall clock time and date at job start Tue Mar 31 2020 13:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.51608 * 2 1 4 4 C 1.53287 * 109.51373 * 239.89661 * 2 1 3 5 5 N 1.47159 * 108.47742 * 187.36275 * 4 2 1 6 6 C 1.34775 * 121.01610 * 230.84696 * 5 4 2 7 7 O 1.21591 * 119.99413 * 174.80870 * 6 5 4 8 8 N 1.34771 * 120.00161 * 354.80757 * 6 5 4 9 9 C 1.46501 * 120.00070 * 185.15150 * 8 6 5 10 10 C 1.52995 * 109.47353 * 185.00156 * 9 8 6 11 11 C 1.50708 * 115.54768 * 275.49116 * 10 9 8 12 12 H 1.08004 * 119.99548 * 115.67134 * 11 10 9 13 13 C 1.37870 * 119.99665 * 295.66775 * 11 10 9 14 14 N 1.31510 * 120.00355 * 352.85376 * 13 11 10 15 15 Si 1.86805 * 119.99845 * 172.85488 * 13 11 10 16 16 H 1.48498 * 109.47306 * 89.99780 * 15 13 11 17 17 H 1.48497 * 109.47291 * 210.00006 * 15 13 11 18 18 H 1.48502 * 109.46851 * 329.99885 * 15 13 11 19 19 C 1.52996 * 117.50187 * 129.77951 * 10 9 8 20 20 C 1.52991 * 60.00089 * 252.51052 * 19 10 9 21 21 C 1.47229 * 117.96224 * 50.86569 * 5 4 2 22 22 C 1.52930 * 108.37911 * 310.08887 * 21 5 4 23 23 C 1.53973 * 109.70460 * 290.17955 * 22 21 5 24 24 C 1.54953 * 104.11779 * 217.36474 * 23 22 21 25 25 C 1.54915 * 102.78673 * 37.69771 * 24 23 22 26 26 C 1.53567 * 109.94641 * 172.88279 * 22 21 5 27 27 O 1.42545 * 110.23339 * 51.29730 * 22 21 5 28 28 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47138 * 300.00488 * 1 2 3 30 30 H 1.09004 * 109.47106 * 59.99721 * 1 2 3 31 31 H 1.09002 * 109.63478 * 307.05814 * 4 2 1 32 32 H 1.09003 * 109.63579 * 67.66893 * 4 2 1 33 33 H 0.97004 * 119.99934 * 5.15164 * 8 6 5 34 34 H 1.08999 * 109.47016 * 304.99840 * 9 8 6 35 35 H 1.09005 * 109.46977 * 64.99741 * 9 8 6 36 36 H 0.97008 * 120.00184 * 185.00772 * 14 13 11 37 37 H 1.08995 * 117.49706 * 0.02562 * 19 10 9 38 38 H 1.09006 * 117.49929 * 145.01698 * 19 10 9 39 39 H 1.09007 * 117.50156 * 252.50734 * 20 19 10 40 40 H 1.09001 * 117.50076 * 107.48853 * 20 19 10 41 41 H 1.08996 * 109.68260 * 69.81015 * 21 5 4 42 42 H 1.09004 * 109.67887 * 190.36631 * 21 5 4 43 43 H 1.09002 * 110.49805 * 336.02368 * 23 22 21 44 44 H 1.09004 * 110.49556 * 98.70227 * 23 22 21 45 45 H 1.08997 * 110.74935 * 279.36927 * 24 23 22 46 46 H 1.09004 * 110.74736 * 156.02061 * 24 23 22 47 47 H 1.09004 * 110.48608 * 203.55214 * 25 24 23 48 48 H 1.09004 * 110.59518 * 80.97557 * 25 24 23 49 49 H 1.08999 * 110.05018 * 238.24022 * 26 22 21 50 50 H 1.08999 * 110.05447 * 359.67287 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2499 5 7 3.5025 -0.8680 -1.1405 6 6 4.3149 -0.4877 -2.1464 7 8 5.5215 -0.5259 -2.0008 8 7 3.7900 -0.0650 -3.3135 9 6 4.6697 0.2407 -4.4444 10 6 3.8404 0.8135 -5.5954 11 6 3.1909 -0.2040 -6.4976 12 1 2.1141 -0.2698 -6.5501 13 6 3.9712 -1.0506 -7.2560 14 7 5.2744 -0.8799 -7.3013 15 14 3.1773 -2.4403 -8.2194 16 1 2.8173 -1.9588 -9.5772 17 1 4.1315 -3.5724 -8.3326 18 1 1.9518 -2.8944 -7.5142 19 6 4.3230 2.1179 -6.2330 20 6 3.0815 2.1170 -5.3390 21 6 4.0489 -1.4399 0.1012 22 6 3.4288 -0.6994 1.2869 23 6 3.9727 0.7400 1.3420 24 6 4.1261 1.0284 2.8567 25 6 4.6185 -0.3297 3.4161 26 6 3.8359 -1.3812 2.6013 27 8 2.0087 -0.6764 1.1657 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.5812 -1.7103 -1.3165 32 1 1.7967 -0.1416 -2.1377 33 1 2.8296 0.0367 -3.4048 34 1 5.4170 0.9719 -4.1360 35 1 5.1679 -0.6711 -4.7740 36 1 5.8153 -1.4286 -7.8907 37 1 5.2315 2.5677 -5.8327 38 1 4.1709 2.2403 -7.3054 39 1 2.1124 2.2388 -5.8231 40 1 3.1730 2.5664 -4.3502 41 1 3.7989 -2.4993 0.1586 42 1 5.1318 -1.3164 0.1168 43 1 4.9392 0.8022 0.8417 44 1 3.2630 1.4337 0.8911 45 1 3.1672 1.3025 3.2966 46 1 4.8679 1.8085 3.0281 47 1 4.3806 -0.4143 4.4765 48 1 5.6907 -0.4440 3.2565 49 1 2.9479 -1.6944 3.1504 50 1 4.4704 -2.2430 2.3945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591983452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:41 Heat of formation + Delta-G solvation = -49.906036 kcal Electronic energy + Delta-G solvation = -29112.495853 eV Core-core repulsion = 25333.363177 eV Total energy + Delta-G solvation = -3779.132676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81526 -38.95329 -36.81993 -36.58939 -34.44442 -33.30765 -32.28674 -32.06408 -29.19175 -28.87614 -26.55407 -26.30034 -25.34748 -23.89888 -22.29351 -21.29205 -20.61206 -19.81197 -19.38979 -19.06061 -17.88281 -16.97611 -16.30585 -15.92931 -15.82148 -15.16350 -15.01124 -14.67561 -14.49707 -14.10901 -13.75921 -13.60818 -13.52669 -13.28920 -13.17662 -12.72942 -12.54140 -12.39923 -11.93243 -11.73396 -11.60778 -11.57459 -11.50415 -11.37426 -11.22176 -11.01463 -10.91858 -10.90538 -10.71984 -10.56175 -10.52666 -10.32298 -9.93486 -9.71029 -9.45482 -9.06584 -8.62875 -8.46666 -8.22992 -7.94191 -6.09539 -4.16562 2.92407 3.24968 3.33428 3.34878 3.47569 3.68714 4.30461 4.34316 4.39354 4.44995 4.63498 4.70170 4.90894 4.95974 4.98305 5.12253 5.22926 5.27657 5.32634 5.36038 5.43633 5.46112 5.49659 5.61118 5.63032 5.72361 5.74614 5.79739 5.82236 5.88620 5.94550 5.96863 5.99090 6.15077 6.18483 6.28810 6.45160 6.55638 6.59733 6.66545 6.87080 7.02332 7.18913 7.28928 7.31028 7.48305 7.52333 7.82752 8.32749 8.52465 8.82757 9.13144 9.48474 10.98091 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.003372 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.308209 B = 8302.380080 C = 8441.572441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.637 5.637 6 C 0.704 3.296 7 O -0.597 6.597 8 N -0.725 5.725 9 C 0.180 3.820 10 C 0.036 3.964 11 C -0.500 4.500 12 H 0.060 0.940 13 C 0.073 3.927 14 N -0.874 5.874 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.165 4.165 20 C -0.208 4.208 21 C 0.113 3.887 22 C 0.104 3.896 23 C -0.147 4.147 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.108 4.108 27 O -0.366 6.366 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.392 0.608 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.080 0.920 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 1.665 18.942 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.084 0.916 4 C -0.040 4.040 5 N -0.376 5.376 6 C 0.405 3.595 7 O -0.476 6.476 8 N -0.379 5.379 9 C 0.057 3.943 10 C 0.035 3.965 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.204 4.204 20 C -0.246 4.246 21 C -0.011 4.011 22 C 0.063 3.937 23 C -0.185 4.185 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.146 4.146 27 O -0.285 6.285 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.227 0.773 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.886 1.411 19.064 20.002 hybrid contribution -0.691 -0.563 -1.038 1.368 sum -6.577 0.849 18.026 19.207 Atomic orbital electron populations 1.21727 0.92296 1.03216 1.02787 1.22517 0.95189 0.95892 0.85195 0.91557 1.22318 0.81214 1.01650 0.98847 1.47266 1.05523 1.67994 1.16863 1.15914 0.84948 0.78296 0.80303 1.90865 1.12619 1.62161 1.81956 1.45471 1.10866 1.70320 1.11277 1.20907 0.90453 1.00590 0.82328 1.19077 0.96558 0.86412 0.94462 1.20419 0.92421 1.16179 1.24749 0.92157 1.24980 0.94742 0.97095 0.96314 1.69958 1.04407 1.39656 1.36935 0.86617 0.79250 0.82154 0.80159 1.20661 1.21114 1.19806 1.22716 0.95109 1.04709 0.97825 1.22872 0.96303 1.06153 0.99256 1.22108 1.00535 0.96473 0.82010 1.22266 0.81266 0.95127 0.95002 1.22952 1.02210 0.96286 0.97030 1.22463 1.01062 0.97135 0.95155 1.22370 0.99912 0.94539 0.99197 1.22073 1.00556 0.98234 0.93767 1.87904 1.20323 1.77306 1.42986 0.91558 0.91626 0.90633 0.90764 0.89251 0.77252 0.94308 0.90284 0.92733 0.91614 0.89979 0.90412 0.91549 0.91574 0.88021 0.90276 0.91037 0.91438 0.91568 0.91415 0.91292 0.90153 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.57 37.16 0.36 -0.87 16 2 C 0.07 0.78 3.13 -26.58 -0.08 0.69 16 3 H 0.07 0.76 5.97 -51.93 -0.31 0.45 16 4 C 0.08 1.05 5.85 -3.53 -0.02 1.03 16 5 N -0.64 -9.91 2.85 -178.16 -0.51 -10.42 16 6 C 0.70 13.95 8.31 -86.92 -0.72 13.22 16 7 O -0.60 -13.96 15.80 5.29 0.08 -13.88 16 8 N -0.73 -14.48 5.37 -65.23 -0.35 -14.83 16 9 C 0.18 4.24 5.52 -4.04 -0.02 4.21 16 10 C 0.04 0.84 1.34 -155.66 -0.21 0.63 16 11 C -0.50 -12.94 8.83 -34.44 -0.30 -13.24 16 12 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 13 C 0.07 1.94 5.23 -17.82 -0.09 1.85 16 14 N -0.87 -24.35 12.49 55.43 0.69 -23.66 16 15 Si 0.89 20.62 29.55 -169.99 -5.02 15.60 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C -0.17 -3.72 9.88 -26.74 -0.26 -3.98 16 20 C -0.21 -4.22 9.78 -26.74 -0.26 -4.49 16 21 C 0.11 1.55 4.99 -3.68 -0.02 1.53 16 22 C 0.10 1.20 0.98 -89.85 -0.09 1.12 16 23 C -0.15 -1.72 5.70 -25.19 -0.14 -1.86 16 24 C -0.12 -1.14 6.91 -24.69 -0.17 -1.31 16 25 C -0.12 -1.04 6.84 -25.02 -0.17 -1.21 16 26 C -0.11 -1.02 6.27 -25.73 -0.16 -1.19 16 27 O -0.37 -4.39 9.79 -35.23 -0.34 -4.73 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.09 5.77 -51.93 -0.30 0.79 16 33 H 0.39 7.01 5.96 -40.82 -0.24 6.77 16 34 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 35 H 0.08 2.15 7.16 -51.93 -0.37 1.78 16 36 H 0.26 7.04 8.32 -40.82 -0.34 6.71 16 37 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 38 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.54 6.86 -51.93 -0.36 1.18 16 43 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 44 H 0.07 0.87 5.74 -51.93 -0.30 0.57 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.75 7.95 -51.93 -0.41 0.33 16 50 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -30.12 386.79 -10.53 -40.65 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.53 Total: 9.29 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.38 Total: -3.85 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.17 Total: -48.90 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.26 Total: -18.61 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.12 -10.53 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591983452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.258 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds