Wall clock time and date at job start Tue Mar 31 2020 14:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00390 * 2 1 4 4 C 1.38626 * 119.99208 * 180.02562 * 3 2 1 5 5 C 1.38855 * 119.98338 * 180.02562 * 4 3 2 6 6 N 1.39659 * 120.02221 * 179.71980 * 5 4 3 7 7 C 1.46505 * 120.00104 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47100 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.46898 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99777 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46962 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46570 * 55.00569 * 11 10 9 13 13 C 1.52996 * 109.47261 * 295.00486 * 11 10 9 14 14 C 1.53000 * 109.46942 * 175.00255 * 11 10 9 15 15 C 1.50700 * 109.47102 * 185.00347 * 14 11 10 16 16 H 1.08000 * 120.00186 * 0.02562 * 15 14 11 17 17 C 1.37873 * 119.99968 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00247 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46917 * 90.00308 * 19 17 15 21 21 H 1.48500 * 109.47071 * 210.00098 * 19 17 15 22 22 H 1.48492 * 109.47636 * 330.00322 * 19 17 15 23 23 C 1.38864 * 119.95794 * 0.02562 * 5 4 3 24 24 C 1.38626 * 119.98281 * 0.02562 * 23 5 4 25 25 O 1.35894 * 119.99345 * 180.02562 * 24 23 5 26 26 C 1.42898 * 117.00168 * 179.97438 * 25 24 23 27 27 C 1.38695 * 119.98584 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46645 * 59.99993 * 1 2 3 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47078 * 300.00211 * 1 2 3 31 31 H 1.08001 * 120.01208 * 359.97438 * 4 3 2 32 32 H 0.96997 * 119.99757 * 0.02562 * 6 5 4 33 33 H 1.08993 * 109.46973 * 300.00750 * 7 6 5 34 34 H 1.09004 * 109.46607 * 60.00410 * 7 6 5 35 35 H 1.09000 * 109.46743 * 300.00113 * 8 7 6 36 36 H 1.08994 * 109.46759 * 59.99957 * 8 7 6 37 37 H 1.00901 * 111.00111 * 56.04726 * 9 8 7 38 38 H 1.08991 * 109.47331 * 299.99975 * 10 9 8 39 39 H 1.08998 * 109.46694 * 60.00630 * 10 9 8 40 40 H 1.09001 * 109.46779 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.47396 * 299.99577 * 13 11 10 42 42 H 1.09001 * 109.47310 * 60.00113 * 13 11 10 43 43 H 1.09001 * 109.47294 * 305.00089 * 14 11 10 44 44 H 1.09000 * 109.47281 * 65.00483 * 14 11 10 45 45 H 0.96995 * 120.00099 * 179.97438 * 18 17 15 46 46 H 1.08000 * 120.00595 * 179.97438 * 23 5 4 47 47 H 1.09004 * 109.46998 * 60.00660 * 26 25 24 48 48 H 1.09005 * 109.47079 * 179.97438 * 26 25 24 49 49 H 1.08994 * 109.47376 * 300.00009 * 26 25 24 50 50 H 1.07997 * 119.98390 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4305 1.2831 -0.0005 5 6 4.0607 2.5203 0.0000 6 7 5.4554 2.5941 0.0054 7 6 6.1199 3.8997 0.0065 8 6 7.6368 3.7000 0.0120 9 7 8.3030 5.0091 0.0138 10 6 9.7641 4.8562 0.0197 11 6 10.4214 6.2379 0.0207 12 1 10.0420 6.8201 0.8605 13 6 10.0951 6.9589 -1.2886 14 6 11.9377 6.0811 0.1525 15 6 12.5743 7.4414 0.2771 16 1 11.9591 8.3289 0.2640 17 6 13.9422 7.5528 0.4088 18 7 14.6915 6.4721 0.4252 19 14 14.7315 9.2389 0.5625 20 1 14.8120 9.6189 1.9958 21 1 16.0982 9.2004 -0.0169 22 1 13.9117 10.2378 -0.1691 23 6 3.3035 3.6843 0.0016 24 6 1.9192 3.6102 0.0032 25 8 1.1779 4.7492 0.0043 26 6 -0.2431 4.5984 0.0053 27 6 1.2905 2.3739 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0187 0.3773 -0.0005 32 1 5.9840 1.7808 0.0084 33 1 5.8302 4.4556 -0.8851 34 1 5.8233 4.4575 0.8948 35 1 7.9267 3.1439 0.9036 36 1 7.9330 3.1423 -0.8764 37 1 7.9954 5.5704 0.7938 38 1 10.0684 4.3080 0.9112 39 1 10.0754 4.3069 -0.8688 40 1 10.5631 7.9434 -1.2876 41 1 10.4746 6.3768 -2.1284 42 1 9.0149 7.0706 -1.3825 43 1 12.1661 5.4905 1.0396 44 1 12.3289 5.5764 -0.7308 45 1 15.6539 6.5505 0.5175 46 1 3.7929 4.6470 0.0025 47 1 -0.5495 4.0488 0.8955 48 1 -0.7128 5.5821 0.0066 49 1 -0.5509 4.0495 -0.8845 50 1 0.2120 2.3168 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602583685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:35 Heat of formation + Delta-G solvation = -83.878095 kcal Electronic energy + Delta-G solvation = -25919.715006 eV Core-core repulsion = 22139.109191 eV Total energy + Delta-G solvation = -3780.605815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47422 -39.74159 -39.10098 -38.24250 -36.34382 -35.03937 -33.76749 -31.33283 -30.77761 -29.23134 -28.70959 -27.89449 -27.46506 -26.23697 -24.40128 -23.69299 -22.71917 -22.14732 -20.73597 -19.76332 -18.48891 -17.97642 -17.32931 -17.02314 -16.89921 -16.84637 -16.65111 -16.42749 -16.35852 -15.89661 -15.59799 -15.58471 -15.31351 -15.01687 -14.41321 -14.14089 -13.82972 -13.75416 -13.39489 -13.24702 -13.18063 -13.04084 -12.90877 -12.75256 -12.53016 -12.46440 -12.43264 -12.20132 -12.17903 -12.03928 -11.94086 -11.76515 -11.46859 -11.08010 -10.90767 -10.52389 -10.41822 -9.37525 -9.03014 -8.49227 -8.16717 -6.25688 0.53585 0.58057 1.41123 1.41997 1.53120 1.99611 2.38460 2.42854 2.63794 2.83236 3.16855 3.44094 3.90729 4.04308 4.11396 4.12967 4.19360 4.21746 4.30230 4.36470 4.38105 4.38340 4.40497 4.47398 4.50657 4.54948 4.58300 4.74151 4.74359 4.83358 4.89501 4.94521 4.99482 5.04980 5.17431 5.29352 5.30370 5.34976 5.45065 5.48331 5.53161 5.57158 5.82544 5.90149 6.00259 6.20154 6.26972 6.32024 6.47112 6.58480 6.76890 6.90522 7.42641 8.95237 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.001618 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.938706 B =17305.924460 C =18151.641460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.198 3.802 4 C -0.278 4.278 5 C 0.286 3.714 6 N -0.732 5.732 7 C 0.135 3.865 8 C 0.054 3.946 9 N -0.682 5.682 10 C 0.079 3.921 11 C -0.075 4.075 12 H 0.056 0.944 13 C -0.114 4.114 14 C 0.031 3.969 15 C -0.529 4.529 16 H 0.061 0.939 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.263 1.263 23 C -0.282 4.282 24 C 0.198 3.802 25 O -0.333 6.333 26 C 0.018 3.982 27 C -0.352 4.352 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.410 0.590 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.346 0.654 38 H 0.021 0.979 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.068 0.932 43 H -0.013 1.013 44 H -0.010 1.010 45 H 0.261 0.739 46 H 0.128 0.872 47 H 0.065 0.935 48 H 0.119 0.881 49 H 0.065 0.935 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.083 -11.183 -0.576 35.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.151 3.849 4 C -0.301 4.301 5 C 0.179 3.821 6 N -0.361 5.361 7 C 0.011 3.989 8 C -0.075 4.075 9 N -0.314 5.314 10 C -0.050 4.050 11 C -0.094 4.094 12 H 0.074 0.926 13 C -0.171 4.171 14 C -0.007 4.007 15 C -0.568 4.568 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.188 1.188 23 C -0.306 4.306 24 C 0.151 3.849 25 O -0.246 6.246 26 C -0.076 4.076 27 C -0.373 4.373 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.165 0.835 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.005 0.995 44 H 0.008 0.992 45 H 0.070 0.930 46 H 0.146 0.854 47 H 0.083 0.917 48 H 0.137 0.863 49 H 0.083 0.917 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -33.734 -10.955 -1.255 35.490 hybrid contribution 0.983 0.007 1.033 1.426 sum -32.751 -10.948 -0.222 34.533 Atomic orbital electron populations 1.23354 0.76382 1.05593 1.02261 1.86049 1.23571 1.26729 1.88090 1.18419 0.91463 0.83969 0.91051 1.19708 0.92154 0.96915 1.21337 1.17016 0.83788 0.91941 0.89313 1.44538 1.02048 1.08671 1.80867 1.21160 0.91028 0.84759 1.01988 1.21987 0.92783 0.91322 1.01442 1.60327 1.05310 1.15233 1.50518 1.21843 0.86760 0.96830 0.99597 1.21026 0.95050 0.95029 0.98317 0.92597 1.21494 1.00613 0.99143 0.95873 1.19025 0.91715 0.95499 0.94413 1.21659 0.92308 0.93917 1.48872 0.92056 1.25950 0.98325 1.00529 0.95198 1.70099 1.05413 1.30175 1.51925 0.85503 0.77597 0.79812 0.78482 1.19925 1.20991 1.18771 1.19798 0.91200 0.98211 1.21352 1.18474 0.90556 0.84959 0.90929 1.86062 1.21096 1.29402 1.88040 1.23354 0.76492 1.05450 1.02279 1.21137 1.01181 0.91114 1.23843 0.91728 0.86204 0.91735 0.84773 0.75419 0.91482 0.91820 0.94344 0.90475 0.83524 0.96062 0.91853 0.94460 0.94672 0.91324 0.99485 0.99154 0.92989 0.85384 0.91658 0.86322 0.91656 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.88 10.49 -92.37 -0.97 -6.85 16 3 C 0.20 3.96 6.68 22.47 0.15 4.11 16 4 C -0.28 -5.77 9.83 22.51 0.22 -5.55 16 5 C 0.29 6.05 6.65 38.19 0.25 6.30 16 6 N -0.73 -13.29 5.73 -339.51 -1.95 -15.24 16 7 C 0.14 2.53 5.17 86.38 0.45 2.98 16 8 C 0.05 1.12 5.80 86.30 0.50 1.62 16 9 N -0.68 -17.52 5.96 -513.90 -3.06 -20.59 16 10 C 0.08 2.60 5.07 86.30 0.44 3.03 16 11 C -0.08 -3.02 2.48 -10.79 -0.03 -3.05 16 12 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 14 C 0.03 1.63 4.45 29.85 0.13 1.76 16 15 C -0.53 -29.98 8.41 25.60 0.22 -29.77 16 16 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 18 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 C -0.28 -6.35 9.24 22.51 0.21 -6.14 16 24 C 0.20 4.18 6.68 22.47 0.15 4.33 16 25 O -0.33 -6.45 10.49 -92.35 -0.97 -7.42 16 26 C 0.02 0.18 9.81 113.37 1.11 1.29 16 27 C -0.35 -6.37 8.02 22.49 0.18 -6.19 16 28 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.12 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.41 6.20 8.48 -92.71 -0.79 5.41 16 33 H 0.07 1.37 7.95 -2.39 -0.02 1.35 16 34 H 0.06 1.18 7.94 -2.38 -0.02 1.17 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.35 8.26 8.73 -89.69 -0.78 7.47 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 43 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 46 H 0.13 2.87 6.72 -2.91 -0.02 2.85 16 47 H 0.06 0.49 7.66 -2.38 -0.02 0.48 16 48 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.06 0.50 7.65 -2.39 -0.02 0.48 16 50 H 0.15 1.87 4.51 -2.91 -0.01 1.86 16 Total: -1.00 -69.39 403.79 0.93 -68.47 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.64 Total: 19.37 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 6.20 Total: -27.37 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -4.72 Total: -92.86 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.94 Total: -14.27 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.39 0.93 -68.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.411 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds