Wall clock time and date at job start Tue Mar 31 2020 13:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 110.41983 * 2 1 4 4 O 1.44423 * 110.37194 * 122.31244 * 2 1 3 5 5 C 1.44429 * 105.27516 * 159.34198 * 4 2 1 6 6 C 1.54477 * 104.80085 * 319.48781 * 5 4 2 7 7 C 1.54478 * 110.37110 * 237.68985 * 2 1 3 8 8 H 1.09000 * 110.62460 * 98.48568 * 7 2 1 9 9 C 1.50705 * 110.51309 * 335.83729 * 7 2 1 10 10 O 1.21280 * 119.99590 * 284.29261 * 9 7 2 11 11 N 1.34783 * 119.99846 * 104.01451 * 9 7 2 12 12 C 1.49721 * 122.75716 * 359.97438 * 11 9 7 13 13 C 1.53657 * 105.34586 * 111.69068 * 12 11 9 14 14 C 1.50964 * 111.88621 * 99.94727 * 13 12 11 15 15 H 1.09001 * 108.82607 * 57.70783 * 14 13 12 16 16 C 1.53585 * 111.28933 * 178.46839 * 14 13 12 17 17 N 1.47163 * 105.64997 * 150.29807 * 16 14 13 18 18 C 1.36943 * 126.09986 * 149.75801 * 17 16 14 19 19 H 1.07995 * 120.00061 * 348.60031 * 18 17 16 20 20 C 1.38807 * 119.99791 * 168.59908 * 18 17 16 21 21 N 1.31628 * 120.00139 * 352.55443 * 20 18 17 22 22 Si 1.86799 * 119.99936 * 172.55579 * 20 18 17 23 23 H 1.48497 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48509 * 109.47242 * 120.00015 * 22 20 18 25 25 H 1.48498 * 109.47193 * 239.99796 * 22 20 18 26 26 C 1.46773 * 107.79754 * 329.73961 * 17 16 14 27 27 C 1.53822 * 107.91587 * 20.28707 * 26 17 16 28 28 H 1.09000 * 111.00914 * 118.49145 * 27 26 17 29 29 C 1.51861 * 109.24380 * 241.15186 * 27 26 17 30 30 C 1.43641 * 122.75615 * 180.27507 * 11 9 7 31 31 H 1.09004 * 109.46728 * 190.01475 * 1 2 3 32 32 H 1.08998 * 109.46685 * 310.00928 * 1 2 3 33 33 H 1.08992 * 109.47206 * 70.01184 * 1 2 3 34 34 H 1.08999 * 110.37196 * 200.65796 * 5 4 2 35 35 H 1.08996 * 110.37001 * 78.32032 * 5 4 2 36 36 H 1.09002 * 110.51080 * 265.33110 * 6 5 4 37 37 H 1.09002 * 110.50794 * 142.62555 * 6 5 4 38 38 H 1.09003 * 110.20925 * 230.66854 * 12 11 9 39 39 H 1.08996 * 110.21608 * 352.63550 * 12 11 9 40 40 H 1.09001 * 109.05748 * 339.31311 * 13 12 11 41 41 H 1.08997 * 108.99008 * 220.54345 * 13 12 11 42 42 H 1.09002 * 110.21043 * 31.25304 * 16 14 13 43 43 H 1.09000 * 110.28053 * 269.38166 * 16 14 13 44 44 H 0.96998 * 119.99800 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.77352 * 260.66938 * 26 17 16 46 46 H 1.09005 * 109.79103 * 139.91109 * 26 17 16 47 47 H 1.08994 * 108.91171 * 79.18157 * 29 27 26 48 48 H 1.09007 * 108.83874 * 320.59505 * 29 27 26 49 49 H 1.09001 * 108.42548 * 359.30097 * 30 11 9 50 50 H 1.08997 * 108.42600 * 116.72682 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3874 -1.0872 0.7994 6 6 3.3178 -1.5057 -0.6860 7 6 2.0678 -0.7740 -1.2239 8 1 2.3426 -0.0857 -2.0232 9 6 1.0443 -1.7666 -1.7124 10 8 0.8609 -2.7984 -1.1021 11 7 0.3290 -1.5049 -2.8244 12 6 0.5002 -0.2487 -3.6209 13 6 1.1250 -0.6935 -4.9524 14 6 0.0949 -0.7943 -6.0514 15 1 -0.3940 0.1732 -6.1651 16 6 0.7396 -1.2028 -7.3842 17 7 -0.2987 -1.9455 -8.1163 18 6 -0.4392 -2.0064 -9.4771 19 1 0.1277 -1.3387 -10.1089 20 6 -1.3102 -2.9263 -10.0444 21 7 -1.8895 -3.8361 -9.2900 22 14 -1.6602 -2.8732 -11.8786 23 1 -0.8904 -1.7643 -12.4974 24 1 -1.2571 -4.1618 -12.4970 25 1 -3.1118 -2.6509 -12.0993 26 6 -1.1565 -2.6097 -7.1277 27 6 -0.9745 -1.8873 -5.7819 28 1 -1.9143 -1.4529 -5.4414 29 6 -0.4266 -2.8663 -4.7584 30 6 -0.6647 -2.4055 -3.3391 31 1 -0.3633 -1.0121 0.1787 32 1 -0.3632 0.6607 0.7871 33 1 -0.3633 0.3513 -0.9657 34 1 3.7242 -1.9224 1.4135 35 1 4.0525 -0.2325 0.9221 36 1 3.1955 -2.5853 -0.7733 37 1 4.2109 -1.1773 -1.2175 38 1 -0.4677 0.2213 -3.7955 39 1 1.1663 0.4394 -3.1004 40 1 1.5954 -1.6674 -4.8171 41 1 1.8867 0.0289 -5.2456 42 1 1.6038 -1.8422 -7.2041 43 1 1.0372 -0.3179 -7.9468 44 1 -2.4985 -4.4787 -9.6864 45 1 -0.8633 -3.6548 -7.0281 46 1 -2.1984 -2.5473 -7.4419 47 1 0.6456 -2.9809 -4.9177 48 1 -0.9099 -3.8328 -4.9019 49 1 -0.7018 -3.2830 -2.6936 50 1 -1.6339 -1.9086 -3.2987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946836829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:10 Heat of formation + Delta-G solvation = -49.405531 kcal Electronic energy + Delta-G solvation = -29139.971122 eV Core-core repulsion = 25360.860149 eV Total energy + Delta-G solvation = -3779.110973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02115 -39.46091 -38.07921 -35.85291 -33.28245 -32.89894 -31.99012 -31.79467 -30.69512 -27.88501 -27.31236 -26.50721 -24.42814 -23.31246 -22.81331 -22.36311 -21.41658 -20.28859 -18.95819 -18.28821 -17.83043 -16.94191 -16.50051 -16.18906 -15.78250 -15.42713 -15.24591 -14.76237 -14.60915 -14.16773 -13.83141 -13.59481 -13.32895 -13.00666 -12.79699 -12.71485 -12.58959 -12.49361 -12.40148 -12.08064 -11.71477 -11.58632 -11.48378 -11.38448 -11.22442 -11.21310 -11.02824 -10.83990 -10.79314 -10.67556 -10.13954 -10.02758 -9.94853 -9.79343 -9.66952 -9.58160 -9.56406 -8.65099 -8.55744 -6.81261 -5.75648 -3.08898 2.51598 2.90871 3.37902 3.43794 3.46231 3.59214 4.13047 4.28036 4.46205 4.47577 4.64304 4.78440 4.85949 4.96666 4.98396 5.04172 5.06659 5.16136 5.24678 5.27194 5.35051 5.38014 5.49274 5.50697 5.55259 5.56657 5.64300 5.65047 5.78843 5.80808 5.92283 5.96344 5.99027 6.05763 6.16347 6.25894 6.30011 6.41976 6.55446 6.58279 6.66069 6.69882 6.82699 6.99848 7.40518 7.51518 7.63059 7.78833 8.16227 8.26490 9.19704 9.80949 10.50484 11.37580 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.034309 B = 0.002723 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.927245 B =10280.742821 C =10460.587014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 H 0.079 0.921 4 O -0.364 6.364 5 C 0.049 3.951 6 C -0.141 4.141 7 C -0.146 4.146 8 H 0.105 0.895 9 C 0.535 3.465 10 O -0.536 6.536 11 N -0.606 5.606 12 C 0.105 3.895 13 C -0.130 4.130 14 C -0.096 4.096 15 H 0.063 0.937 16 C 0.140 3.860 17 N -0.599 5.599 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.178 3.822 27 C -0.104 4.104 28 H 0.067 0.933 29 C -0.125 4.125 30 C 0.109 3.891 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.013 0.987 43 H 0.039 0.961 44 H 0.252 0.748 45 H 0.031 0.969 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 10.127 18.091 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.096 0.904 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.179 4.179 7 C -0.167 4.167 8 H 0.123 0.877 9 C 0.323 3.677 10 O -0.413 6.413 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.168 4.168 14 C -0.116 4.116 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.324 5.324 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.052 3.948 27 C -0.123 4.123 28 H 0.086 0.914 29 C -0.164 4.164 30 C -0.015 4.015 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.031 0.969 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.742 9.369 18.464 22.105 hybrid contribution -0.091 0.029 -1.419 1.422 sum 7.651 9.397 17.045 20.913 Atomic orbital electron populations 1.21957 0.92909 1.03993 1.02650 1.22824 0.95725 0.94667 0.83527 0.90359 1.89185 1.27119 1.74435 1.37558 1.23375 0.84604 0.99842 0.94996 1.22940 0.96165 1.02665 0.96149 1.22863 0.95852 0.98029 0.99999 0.87666 1.19987 0.81296 0.86908 0.79512 1.90701 1.67478 1.27176 1.55929 1.48093 1.39452 1.20604 1.25785 1.22639 1.01813 0.85761 0.91454 1.21850 0.98710 1.02472 0.93803 1.21766 0.95827 0.98851 0.95166 0.91880 1.21245 0.91924 0.94837 0.90637 1.44340 1.29174 1.57086 1.01789 1.19063 1.21946 1.14363 0.80432 0.90616 1.24853 1.00717 0.96828 0.97961 1.69972 1.33557 1.19020 1.33824 0.86079 0.77764 0.77276 0.84826 1.20475 1.21771 1.21700 1.21082 0.96127 0.93806 0.83752 1.22245 0.96823 0.95545 0.97727 0.91446 1.21546 1.02532 0.99660 0.92620 1.20545 0.90402 0.94479 0.96049 0.90867 0.91504 0.90909 0.88851 0.92196 0.89228 0.89888 0.89873 0.90004 0.90522 0.91620 0.96895 0.94287 0.93771 0.95083 0.92542 0.91259 0.90797 0.90187 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.53 37.16 0.32 -1.21 16 2 C 0.09 0.86 3.83 -25.95 -0.10 0.76 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 O -0.36 -4.24 11.34 -35.23 -0.40 -4.64 16 5 C 0.05 0.42 7.63 37.93 0.29 0.71 16 6 C -0.14 -1.28 6.59 -25.17 -0.17 -1.44 16 7 C -0.15 -1.40 2.97 -90.21 -0.27 -1.66 16 8 H 0.11 0.76 5.87 -51.93 -0.30 0.46 16 9 C 0.53 6.89 4.71 -10.98 -0.05 6.84 16 10 O -0.54 -9.00 15.23 5.56 0.08 -8.92 16 11 N -0.61 -7.25 2.57 -173.98 -0.45 -7.70 16 12 C 0.11 1.02 5.91 -1.91 -0.01 1.01 16 13 C -0.13 -1.55 4.58 -27.41 -0.13 -1.67 16 14 C -0.10 -1.50 2.61 -90.14 -0.24 -1.74 16 15 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.14 2.79 6.71 -3.38 -0.02 2.76 16 17 N -0.60 -15.02 3.37 -171.62 -0.58 -15.60 16 18 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16 19 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 20 C -0.01 -0.19 5.42 -17.43 -0.09 -0.29 16 21 N -0.92 -26.82 10.69 55.49 0.59 -26.23 16 22 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.18 4.16 4.98 -3.47 -0.02 4.14 16 27 C -0.10 -1.79 3.13 -89.57 -0.28 -2.07 16 28 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 29 C -0.13 -1.94 4.52 -28.26 -0.13 -2.07 16 30 C 0.11 1.47 5.70 -6.51 -0.04 1.43 16 31 H 0.07 0.91 7.15 -51.93 -0.37 0.54 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 1.01 7.15 -51.93 -0.37 0.64 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 39 H 0.08 0.58 5.73 -51.93 -0.30 0.28 16 40 H 0.08 1.04 5.58 -51.93 -0.29 0.75 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.01 0.27 7.96 -51.93 -0.41 -0.14 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.03 0.81 7.12 -51.93 -0.37 0.44 16 46 H 0.06 1.49 7.16 -51.93 -0.37 1.12 16 47 H 0.07 1.14 5.78 -51.93 -0.30 0.84 16 48 H 0.07 1.21 7.66 -51.93 -0.40 0.82 16 49 H 0.08 1.19 7.00 -51.93 -0.36 0.82 16 50 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -32.91 368.63 -9.69 -42.60 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.39 Total: -0.98 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.08 Total: -1.00 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.43 Total: -49.53 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.32 Total: -13.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.91 -9.69 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.803 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds