Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.86545 * 2 1 4 4 O 1.43743 * 110.00041 * 238.91672 * 2 1 3 5 5 C 1.44386 * 106.97286 * 267.01575 * 4 2 1 6 6 C 1.54991 * 103.49243 * 319.94289 * 5 4 2 7 7 C 1.54097 * 109.87812 * 121.00857 * 2 1 3 8 8 H 1.08997 * 110.48839 * 358.87360 * 7 2 1 9 9 C 1.50700 * 110.48827 * 236.35177 * 7 2 1 10 10 O 1.21280 * 119.99758 * 1.85083 * 9 7 2 11 11 N 1.34772 * 120.00174 * 181.84504 * 9 7 2 12 12 C 1.43511 * 122.55043 * 180.02562 * 11 9 7 13 13 C 1.51717 * 114.25777 * 122.92569 * 12 11 9 14 14 C 1.51154 * 111.89045 * 82.63794 * 13 12 11 15 15 H 1.08989 * 110.22944 * 34.32092 * 14 13 12 16 16 C 1.53399 * 110.93283 * 156.74560 * 14 13 12 17 17 N 1.46599 * 108.10973 * 102.74057 * 16 14 13 18 18 C 1.36935 * 125.32014 * 178.64954 * 17 16 14 19 19 H 1.07997 * 119.99846 * 350.00556 * 18 17 16 20 20 C 1.38812 * 120.00051 * 169.99266 * 18 17 16 21 21 N 1.31621 * 120.00094 * 350.54891 * 20 18 17 22 22 Si 1.86806 * 119.99971 * 170.54345 * 20 18 17 23 23 H 1.48503 * 109.46751 * 94.63158 * 22 20 18 24 24 H 1.48490 * 109.47219 * 214.63100 * 22 20 18 25 25 H 1.48501 * 109.47073 * 334.63473 * 22 20 18 26 26 C 1.46664 * 109.36322 * 358.65636 * 17 16 14 27 27 C 1.54044 * 106.93846 * 18.27386 * 26 17 16 28 28 H 1.08994 * 110.61464 * 91.14824 * 27 26 17 29 29 C 1.51853 * 109.44455 * 214.15367 * 27 26 17 30 30 C 1.49550 * 122.54982 * 359.71146 * 11 9 7 31 31 H 1.08995 * 109.47330 * 298.98612 * 1 2 3 32 32 H 1.09000 * 109.47224 * 58.99435 * 1 2 3 33 33 H 1.09009 * 109.47019 * 178.99309 * 1 2 3 34 34 H 1.08997 * 110.61674 * 78.44733 * 5 4 2 35 35 H 1.09005 * 110.61461 * 201.27957 * 5 4 2 36 36 H 1.08998 * 110.90593 * 278.82596 * 6 5 4 37 37 H 1.08994 * 110.90975 * 155.22484 * 6 5 4 38 38 H 1.09004 * 108.52299 * 244.15741 * 12 11 9 39 39 H 1.08993 * 108.52674 * 1.68004 * 12 11 9 40 40 H 1.08999 * 108.99769 * 203.26198 * 13 12 11 41 41 H 1.09001 * 108.99804 * 322.01379 * 13 12 11 42 42 H 1.08999 * 109.74273 * 222.41619 * 16 14 13 43 43 H 1.09002 * 109.74162 * 343.08406 * 16 14 13 44 44 H 0.97000 * 120.00063 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.96683 * 137.65306 * 26 17 16 46 46 H 1.08998 * 109.96690 * 258.86590 * 26 17 16 47 47 H 1.09002 * 109.01167 * 295.51590 * 29 27 26 48 48 H 1.08997 * 109.00957 * 54.37978 * 29 27 26 49 49 H 1.09004 * 110.26308 * 9.16509 * 30 11 9 50 50 H 1.09001 * 110.26913 * 131.26051 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 2.2334 -2.0702 -0.7629 6 6 2.8357 -1.9494 0.6600 7 6 2.0540 -0.7466 1.2421 8 1 1.2237 -1.0930 1.8574 9 6 2.9689 0.1421 2.0447 10 8 3.1676 1.2851 1.6911 11 7 3.5663 -0.3332 3.1553 12 6 4.4466 0.4647 3.9603 13 6 4.0263 0.5837 5.4132 14 6 4.4721 -0.6086 6.2283 15 1 5.4311 -0.9767 5.8642 16 6 4.5710 -0.2492 7.7163 17 7 3.3926 -0.7952 8.3963 18 6 3.1387 -0.7010 9.7386 19 1 3.9040 -0.3383 10.4088 20 6 1.8976 -1.0716 10.2379 21 7 0.9076 -1.3348 9.4114 22 14 1.6325 -1.1968 12.0828 23 1 1.0689 0.0802 12.5896 24 1 0.6875 -2.3047 12.3730 25 1 2.9306 -1.4652 12.7523 26 6 2.5281 -1.4581 7.4143 27 6 3.3908 -1.7284 6.1671 28 1 3.8546 -2.7129 6.2272 29 6 2.5328 -1.5975 4.9210 30 6 3.3568 -1.7301 3.6465 31 1 -0.3634 0.4980 0.8989 32 1 -0.3634 0.5294 -0.8808 33 1 -0.3633 -1.0276 -0.0181 34 1 1.2878 -2.6116 -0.7348 35 1 2.9345 -2.5597 -1.4390 36 1 3.9031 -1.7338 0.6135 37 1 2.6477 -2.8529 1.2400 38 1 5.4435 0.0253 3.9230 39 1 4.4967 1.4653 3.5311 40 1 4.4652 1.4871 5.8367 41 1 2.9402 0.6617 5.4632 42 1 5.4758 -0.6844 8.1408 43 1 4.5940 0.8343 7.8326 44 1 0.0405 -1.5941 9.7603 45 1 2.1562 -2.3986 7.8208 46 1 1.6921 -0.8082 7.1557 47 1 1.7692 -2.3752 4.9324 48 1 2.0460 -0.6223 4.9260 49 1 2.8093 -2.3127 2.9056 50 1 4.3151 -2.2009 3.8659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946836830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = -53.260220 kcal Electronic energy + Delta-G solvation = -29101.520201 eV Core-core repulsion = 25322.242077 eV Total energy + Delta-G solvation = -3779.278125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.00249 -39.51969 -38.22238 -35.93400 -33.40374 -32.82630 -32.07880 -31.49151 -30.63500 -27.84389 -27.61513 -26.71379 -24.36859 -23.22248 -22.98126 -22.10773 -21.24371 -20.17099 -19.32668 -18.34273 -17.76850 -16.94819 -16.63887 -16.18498 -15.87637 -15.31420 -15.01108 -14.60367 -14.33720 -14.23831 -13.83913 -13.63616 -13.59588 -13.12597 -13.07852 -12.93249 -12.67476 -12.29063 -12.23886 -12.09533 -11.80854 -11.65610 -11.44750 -11.29602 -11.24270 -11.15023 -11.10458 -10.83685 -10.75344 -10.67559 -10.08298 -10.03478 -9.94804 -9.82847 -9.76667 -9.65060 -9.54029 -8.69013 -8.53558 -6.78632 -5.76232 -3.08346 2.50307 2.88673 3.37780 3.43790 3.45653 3.60534 4.15613 4.21992 4.46229 4.48743 4.70735 4.81681 4.86038 4.95515 5.04112 5.08896 5.14983 5.17953 5.25553 5.29092 5.33095 5.35648 5.40521 5.46737 5.51793 5.57288 5.64665 5.67815 5.74681 5.87764 5.90160 5.94070 6.01672 6.08395 6.13849 6.26905 6.38370 6.47248 6.55582 6.58480 6.64810 6.65462 6.77601 7.01820 7.36785 7.48939 7.61079 7.77712 8.08812 8.26886 9.20637 9.82413 10.48526 11.36500 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.002943 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.829068 B = 9512.062621 C = 9949.156646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 H 0.117 0.883 4 O -0.369 6.369 5 C 0.046 3.954 6 C -0.146 4.146 7 C -0.140 4.140 8 H 0.113 0.887 9 C 0.531 3.469 10 O -0.542 6.542 11 N -0.603 5.603 12 C 0.110 3.890 13 C -0.126 4.126 14 C -0.091 4.091 15 H 0.066 0.934 16 C 0.141 3.859 17 N -0.601 5.601 18 C -0.230 4.230 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.184 3.816 27 C -0.109 4.109 28 H 0.067 0.933 29 C -0.130 4.130 30 C 0.102 3.898 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.252 0.748 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -3.606 -18.820 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 H 0.135 0.865 4 O -0.288 6.288 5 C -0.031 4.031 6 C -0.183 4.183 7 C -0.161 4.161 8 H 0.131 0.869 9 C 0.319 3.681 10 O -0.420 6.420 11 N -0.335 5.335 12 C -0.013 4.013 13 C -0.164 4.164 14 C -0.110 4.110 15 H 0.084 0.916 16 C 0.015 3.985 17 N -0.327 5.327 18 C -0.358 4.358 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.059 3.941 27 C -0.129 4.129 28 H 0.086 0.914 29 C -0.168 4.168 30 C -0.020 4.020 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.093 -2.916 -19.088 19.556 hybrid contribution -0.307 -0.281 1.504 1.560 sum 2.786 -3.197 -17.584 18.088 Atomic orbital electron populations 1.22278 0.95079 1.02426 1.02917 1.22790 0.93916 0.98283 0.82745 0.86546 1.88942 1.85984 1.20559 1.33319 1.23555 0.99915 0.84904 0.94720 1.23244 1.00963 0.97238 0.96884 1.22724 0.98993 0.96393 0.98029 0.86938 1.20094 0.80228 0.87482 0.80268 1.90671 1.63157 1.19044 1.69085 1.47920 1.47055 1.13823 1.24712 1.20634 0.92281 0.96827 0.91598 1.21461 1.03198 0.98634 0.93071 1.21790 0.97935 0.95203 0.96029 0.91575 1.21142 0.91307 0.96271 0.89799 1.44168 1.20940 1.63489 1.04059 1.19020 0.96834 1.38506 0.81476 0.90690 1.24813 0.95367 1.02283 0.97867 1.69975 1.01628 1.52479 1.32426 0.86147 0.77555 0.77361 0.84975 1.21637 1.21633 1.20623 1.21052 0.90796 0.97307 0.84994 1.22381 0.96484 0.97659 0.96331 0.91420 1.21794 0.98482 1.03346 0.93170 1.22504 1.01234 0.81889 0.96342 0.91258 0.91558 0.92346 0.91899 0.88764 0.89906 0.88982 0.92323 0.90038 0.91016 0.90612 0.96244 0.96065 0.93808 0.92868 0.95099 0.91345 0.90448 0.89698 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.31 37.16 0.35 -1.19 16 2 C 0.08 0.88 3.70 -26.16 -0.10 0.79 16 3 H 0.12 1.54 6.44 -51.93 -0.33 1.20 16 4 O -0.37 -4.21 11.20 -35.23 -0.39 -4.60 16 5 C 0.05 0.36 7.67 38.21 0.29 0.65 16 6 C -0.15 -1.13 5.45 -24.72 -0.13 -1.26 16 7 C -0.14 -1.40 2.18 -90.24 -0.20 -1.59 16 8 H 0.11 0.99 7.61 -51.93 -0.40 0.59 16 9 C 0.53 6.97 7.01 -10.99 -0.08 6.90 16 10 O -0.54 -9.00 14.75 5.56 0.08 -8.92 16 11 N -0.60 -7.35 2.62 -174.65 -0.46 -7.81 16 12 C 0.11 1.43 5.75 -6.27 -0.04 1.40 16 13 C -0.13 -1.86 4.77 -28.31 -0.13 -2.00 16 14 C -0.09 -1.45 2.78 -89.86 -0.25 -1.70 16 15 H 0.07 0.92 7.68 -51.94 -0.40 0.53 16 16 C 0.14 2.86 6.82 -3.78 -0.03 2.83 16 17 N -0.60 -15.05 3.38 -172.14 -0.58 -15.63 16 18 C -0.23 -6.37 10.21 -15.06 -0.15 -6.53 16 19 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 20 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 21 N -0.92 -26.55 10.61 55.49 0.59 -25.97 16 22 Si 0.91 21.91 29.56 -169.99 -5.03 16.88 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.18 4.21 4.84 -3.41 -0.02 4.20 16 27 C -0.11 -1.81 2.93 -89.18 -0.26 -2.07 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 C -0.13 -1.74 4.48 -27.65 -0.12 -1.87 16 30 C 0.10 1.05 5.73 -2.68 -0.02 1.03 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.46 8.13 -51.92 -0.42 0.04 16 34 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 37 H 0.09 0.51 6.69 -51.93 -0.35 0.17 16 38 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 39 H 0.08 1.15 6.99 -51.93 -0.36 0.79 16 40 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 41 H 0.08 1.29 5.87 -51.93 -0.30 0.99 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.44 7.40 -51.93 -0.38 0.06 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.05 1.37 7.23 -51.93 -0.38 1.00 16 46 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 1.19 5.47 -51.93 -0.28 0.91 16 49 H 0.08 0.67 4.44 -51.93 -0.23 0.44 16 50 H 0.08 0.79 7.80 -51.93 -0.41 0.38 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -32.32 367.82 -9.56 -41.87 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.33 Total: -0.69 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.98 Total: -0.68 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.45 Total: -49.40 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.31 Total: -13.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.32 -9.56 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.387 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds