Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.86545 * 2 1 4 4 O 1.43743 * 110.00041 * 238.91672 * 2 1 3 5 5 C 1.44386 * 106.97286 * 267.01575 * 4 2 1 6 6 C 1.54991 * 103.49243 * 319.94289 * 5 4 2 7 7 C 1.54097 * 109.87812 * 121.00857 * 2 1 3 8 8 H 1.08997 * 110.48839 * 358.87360 * 7 2 1 9 9 C 1.50700 * 110.48827 * 236.35177 * 7 2 1 10 10 O 1.21280 * 119.99758 * 1.85083 * 9 7 2 11 11 N 1.34772 * 120.00174 * 181.84504 * 9 7 2 12 12 C 1.43511 * 122.55043 * 180.02562 * 11 9 7 13 13 C 1.51717 * 114.25777 * 122.92569 * 12 11 9 14 14 C 1.51154 * 111.89045 * 82.63794 * 13 12 11 15 15 H 1.08989 * 110.22944 * 34.32092 * 14 13 12 16 16 C 1.53399 * 110.93283 * 156.74560 * 14 13 12 17 17 N 1.46599 * 108.10973 * 102.74057 * 16 14 13 18 18 C 1.36935 * 125.32014 * 178.64954 * 17 16 14 19 19 H 1.07997 * 119.99846 * 350.00556 * 18 17 16 20 20 C 1.38812 * 120.00051 * 169.99266 * 18 17 16 21 21 N 1.31621 * 120.00094 * 350.54891 * 20 18 17 22 22 Si 1.86806 * 119.99971 * 170.54345 * 20 18 17 23 23 H 1.48503 * 109.46751 * 94.63158 * 22 20 18 24 24 H 1.48490 * 109.47219 * 214.63100 * 22 20 18 25 25 H 1.48501 * 109.47073 * 334.63473 * 22 20 18 26 26 C 1.46664 * 109.36322 * 358.65636 * 17 16 14 27 27 C 1.54044 * 106.93846 * 18.27386 * 26 17 16 28 28 H 1.08994 * 110.61464 * 91.14824 * 27 26 17 29 29 C 1.51853 * 109.44455 * 214.15367 * 27 26 17 30 30 C 1.49550 * 122.54982 * 359.71146 * 11 9 7 31 31 H 1.08995 * 109.47330 * 298.98612 * 1 2 3 32 32 H 1.09000 * 109.47224 * 58.99435 * 1 2 3 33 33 H 1.09009 * 109.47019 * 178.99309 * 1 2 3 34 34 H 1.08997 * 110.61674 * 78.44733 * 5 4 2 35 35 H 1.09005 * 110.61461 * 201.27957 * 5 4 2 36 36 H 1.08998 * 110.90593 * 278.82596 * 6 5 4 37 37 H 1.08994 * 110.90975 * 155.22484 * 6 5 4 38 38 H 1.09004 * 108.52299 * 244.15741 * 12 11 9 39 39 H 1.08993 * 108.52674 * 1.68004 * 12 11 9 40 40 H 1.08999 * 108.99769 * 203.26198 * 13 12 11 41 41 H 1.09001 * 108.99804 * 322.01379 * 13 12 11 42 42 H 1.08999 * 109.74273 * 222.41619 * 16 14 13 43 43 H 1.09002 * 109.74162 * 343.08406 * 16 14 13 44 44 H 0.97000 * 120.00063 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.96683 * 137.65306 * 26 17 16 46 46 H 1.08998 * 109.96690 * 258.86590 * 26 17 16 47 47 H 1.09002 * 109.01167 * 295.51590 * 29 27 26 48 48 H 1.08997 * 109.00957 * 54.37978 * 29 27 26 49 49 H 1.09004 * 110.26308 * 9.16509 * 30 11 9 50 50 H 1.09001 * 110.26913 * 131.26051 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 2.2334 -2.0702 -0.7629 6 6 2.8357 -1.9494 0.6600 7 6 2.0540 -0.7466 1.2421 8 1 1.2237 -1.0930 1.8574 9 6 2.9689 0.1421 2.0447 10 8 3.1676 1.2851 1.6911 11 7 3.5663 -0.3332 3.1553 12 6 4.4466 0.4647 3.9603 13 6 4.0263 0.5837 5.4132 14 6 4.4721 -0.6086 6.2283 15 1 5.4311 -0.9767 5.8642 16 6 4.5710 -0.2492 7.7163 17 7 3.3926 -0.7952 8.3963 18 6 3.1387 -0.7010 9.7386 19 1 3.9040 -0.3383 10.4088 20 6 1.8976 -1.0716 10.2379 21 7 0.9076 -1.3348 9.4114 22 14 1.6325 -1.1968 12.0828 23 1 1.0689 0.0802 12.5896 24 1 0.6875 -2.3047 12.3730 25 1 2.9306 -1.4652 12.7523 26 6 2.5281 -1.4581 7.4143 27 6 3.3908 -1.7284 6.1671 28 1 3.8546 -2.7129 6.2272 29 6 2.5328 -1.5975 4.9210 30 6 3.3568 -1.7301 3.6465 31 1 -0.3634 0.4980 0.8989 32 1 -0.3634 0.5294 -0.8808 33 1 -0.3633 -1.0276 -0.0181 34 1 1.2878 -2.6116 -0.7348 35 1 2.9345 -2.5597 -1.4390 36 1 3.9031 -1.7338 0.6135 37 1 2.6477 -2.8529 1.2400 38 1 5.4435 0.0253 3.9230 39 1 4.4967 1.4653 3.5311 40 1 4.4652 1.4871 5.8367 41 1 2.9402 0.6617 5.4632 42 1 5.4758 -0.6844 8.1408 43 1 4.5940 0.8343 7.8326 44 1 0.0405 -1.5941 9.7603 45 1 2.1562 -2.3986 7.8208 46 1 1.6921 -0.8082 7.1557 47 1 1.7692 -2.3752 4.9324 48 1 2.0460 -0.6223 4.9260 49 1 2.8093 -2.3127 2.9056 50 1 4.3151 -2.2009 3.8659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946836830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = -73.578118 kcal Electronic energy + Delta-G solvation = -29102.401251 eV Core-core repulsion = 25322.242077 eV Total energy + Delta-G solvation = -3780.159175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95684 -40.61205 -39.34808 -37.29044 -34.92566 -33.96099 -33.20193 -32.48204 -32.01310 -29.15562 -29.05416 -27.71197 -26.02174 -24.40895 -24.14176 -22.81121 -22.14230 -21.95821 -20.25988 -19.70145 -18.90002 -18.64171 -17.47916 -17.12377 -16.82000 -16.77657 -16.39993 -15.99705 -15.47715 -15.38683 -15.10764 -14.80358 -14.54223 -14.41231 -14.23274 -13.88456 -13.75148 -13.59377 -13.45049 -13.18836 -12.99492 -12.91534 -12.79500 -12.69011 -12.47822 -12.42463 -12.25907 -12.04005 -11.90890 -11.84470 -11.77343 -11.74735 -11.31479 -11.19384 -11.01675 -10.85296 -10.65014 -10.55973 -9.68039 -8.82510 -7.88451 -5.22601 1.44602 1.45268 1.52277 1.55262 1.94924 2.48856 2.91460 3.29444 3.36525 3.46455 3.67402 3.73073 3.77469 3.81669 3.97602 4.07761 4.13231 4.15745 4.24389 4.28703 4.35009 4.42780 4.50592 4.61924 4.62711 4.67929 4.69998 4.72656 4.76010 4.86083 4.89584 4.96130 5.00965 5.05799 5.06287 5.12095 5.14229 5.17073 5.21113 5.25922 5.32338 5.47137 5.57597 5.61271 5.74837 5.83429 5.96170 6.22743 6.40577 7.10098 7.11680 7.81263 8.44245 9.22591 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.002943 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.829068 B = 9512.062621 C = 9949.156646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.084 0.916 4 O -0.395 6.395 5 C 0.040 3.960 6 C -0.139 4.139 7 C -0.136 4.136 8 H 0.130 0.870 9 C 0.525 3.475 10 O -0.585 6.585 11 N -0.602 5.602 12 C 0.117 3.883 13 C -0.115 4.115 14 C -0.077 4.077 15 H 0.104 0.896 16 C 0.132 3.868 17 N -0.624 5.624 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.062 4.062 21 N -0.945 5.945 22 Si 0.975 3.025 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.193 3.807 27 C -0.093 4.093 28 H 0.086 0.914 29 C -0.122 4.122 30 C 0.110 3.890 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.027 0.973 43 H 0.013 0.987 44 H 0.247 0.753 45 H 0.015 0.985 46 H -0.008 1.008 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.118 0.882 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 -5.845 -19.963 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 H 0.102 0.898 4 O -0.314 6.314 5 C -0.036 4.036 6 C -0.176 4.176 7 C -0.157 4.157 8 H 0.148 0.852 9 C 0.315 3.685 10 O -0.466 6.466 11 N -0.333 5.333 12 C -0.008 4.008 13 C -0.154 4.154 14 C -0.096 4.096 15 H 0.122 0.878 16 C 0.007 3.993 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.093 0.907 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.068 3.932 27 C -0.113 4.113 28 H 0.104 0.896 29 C -0.161 4.161 30 C -0.010 4.010 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.031 0.969 44 H 0.056 0.944 45 H 0.034 0.966 46 H 0.010 0.990 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.136 0.864 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.301 -5.169 -20.234 21.322 hybrid contribution -0.658 0.481 1.898 2.066 sum 3.643 -4.687 -18.337 19.274 Atomic orbital electron populations 1.22230 0.93775 1.03476 1.02752 1.22687 0.94903 0.96984 0.83388 0.89824 1.88913 1.86224 1.22552 1.33730 1.23816 1.01330 0.83362 0.95087 1.23294 1.00175 0.97142 0.97020 1.22757 0.99058 0.96584 0.97325 0.85221 1.20694 0.80053 0.87279 0.80440 1.90657 1.64586 1.21094 1.70282 1.47998 1.46494 1.14558 1.24220 1.20501 0.93568 0.96768 0.89915 1.21344 1.01259 0.98221 0.94549 1.21755 0.99486 0.95217 0.93126 0.87790 1.21381 0.89789 0.95588 0.92511 1.44526 1.22468 1.64094 1.03915 1.19393 0.96999 1.38037 0.83235 0.90662 1.25632 0.95243 1.02560 1.02130 1.70182 1.01713 1.53457 1.34024 0.85128 0.77645 0.76962 0.79978 1.21590 1.21715 1.19380 1.20848 0.90928 0.94281 0.87177 1.22267 0.95820 0.98659 0.94525 0.89618 1.21702 0.98590 1.02404 0.93392 1.22631 1.02227 0.81052 0.95115 0.91447 0.91775 0.90591 0.90082 0.87308 0.90476 0.85726 0.89736 0.91609 0.91318 0.93470 0.95475 0.96930 0.94384 0.96633 0.98993 0.90370 0.92886 0.86382 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.31 71.98 0.67 -2.13 16 2 C 0.08 1.66 3.70 30.97 0.11 1.78 16 3 H 0.08 2.31 6.44 -2.39 -0.02 2.30 16 4 O -0.39 -8.46 11.20 -148.98 -1.67 -10.13 16 5 C 0.04 0.50 7.67 72.66 0.56 1.06 16 6 C -0.14 -1.61 5.45 31.89 0.17 -1.43 16 7 C -0.14 -2.41 2.18 -10.55 -0.02 -2.43 16 8 H 0.13 1.86 7.61 -2.39 -0.02 1.84 16 9 C 0.53 13.16 7.01 87.66 0.61 13.78 16 10 O -0.59 -19.76 14.75 -3.03 -0.04 -19.81 16 11 N -0.60 -13.25 2.62 -824.86 -2.16 -15.41 16 12 C 0.12 2.80 5.75 86.51 0.50 3.30 16 13 C -0.12 -3.33 4.77 29.57 0.14 -3.19 16 14 C -0.08 -2.30 2.78 -10.30 -0.03 -2.33 16 15 H 0.10 2.42 7.68 -2.39 -0.02 2.40 16 16 C 0.13 5.32 6.82 86.49 0.59 5.91 16 17 N -0.62 -31.92 3.38 -698.53 -2.36 -34.28 16 18 C -0.25 -14.01 10.21 84.03 0.86 -13.15 16 19 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 20 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 21 N -0.95 -56.65 10.61 21.65 0.23 -56.42 16 22 Si 0.97 45.78 29.56 68.60 2.03 47.81 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C 0.19 9.09 4.84 86.70 0.42 9.51 16 27 C -0.09 -2.95 2.93 -9.86 -0.03 -2.98 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 C -0.12 -3.04 4.48 30.00 0.13 -2.90 16 30 C 0.11 1.81 5.73 85.57 0.49 2.30 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.01 8.13 -2.38 -0.02 0.99 16 34 H 0.08 0.73 8.13 -2.39 -0.02 0.71 16 35 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.03 7.87 -2.39 -0.02 1.01 16 37 H 0.12 0.64 6.69 -2.39 -0.02 0.62 16 38 H 0.08 1.65 7.68 -2.39 -0.02 1.63 16 39 H 0.07 1.83 6.99 -2.39 -0.02 1.81 16 40 H 0.07 2.01 7.53 -2.39 -0.02 1.99 16 41 H 0.05 1.64 5.87 -2.39 -0.01 1.63 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.01 0.53 7.40 -2.39 -0.02 0.51 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.02 0.82 7.23 -2.39 -0.02 0.81 16 46 H -0.01 -0.43 7.36 -2.39 -0.02 -0.45 16 47 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.62 5.47 -2.39 -0.01 1.61 16 49 H 0.12 1.20 4.44 -2.39 -0.01 1.19 16 50 H 0.10 1.38 7.80 -2.39 -0.02 1.36 16 Total: -1.00 -75.59 367.82 2.59 -73.01 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.92 Total: 11.22 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.64 Total: 4.00 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -4.29 Total: -106.11 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.71 Total: -29.94 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.59 2.59 -73.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.573 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds