Wall clock time and date at job start Tue Mar 31 2020 13:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.86615 * 2 1 4 4 O 1.43739 * 109.88216 * 121.16513 * 2 1 3 5 5 C 1.44377 * 106.97354 * 145.93873 * 4 2 1 6 6 C 1.54985 * 103.49278 * 319.94103 * 5 4 2 7 7 C 1.54101 * 109.88024 * 239.00041 * 2 1 3 8 8 H 1.09002 * 110.48642 * 357.35123 * 7 2 1 9 9 C 1.50704 * 110.48734 * 119.86370 * 7 2 1 10 10 O 1.21279 * 120.00250 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99790 * 179.97438 * 9 7 2 12 12 C 1.43514 * 122.55021 * 180.02562 * 11 9 7 13 13 C 1.51718 * 114.25159 * 122.97937 * 12 11 9 14 14 C 1.51158 * 111.88992 * 82.62448 * 13 12 11 15 15 H 1.09004 * 110.69727 * 33.96512 * 14 13 12 16 16 C 1.53382 * 110.94667 * 156.72282 * 14 13 12 17 17 N 1.46602 * 108.10525 * 102.73501 * 16 14 13 18 18 C 1.36943 * 125.31612 * 178.64257 * 17 16 14 19 19 H 1.07993 * 119.99880 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99802 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00445 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99762 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47019 * 59.99824 * 22 20 18 24 24 H 1.48501 * 109.46940 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47127 * 300.00004 * 22 20 18 26 26 C 1.46662 * 109.36775 * 358.65093 * 17 16 14 27 27 C 1.54055 * 106.92824 * 18.29719 * 26 17 16 28 28 H 1.08995 * 111.47905 * 91.52775 * 27 26 17 29 29 C 1.51846 * 109.45684 * 214.13040 * 27 26 17 30 30 C 1.49557 * 122.54970 * 0.03129 * 11 9 7 31 31 H 1.09003 * 109.46784 * 181.00287 * 1 2 3 32 32 H 1.09000 * 109.47378 * 301.00199 * 1 2 3 33 33 H 1.09000 * 109.47380 * 61.00567 * 1 2 3 34 34 H 1.08997 * 110.61773 * 78.44926 * 5 4 2 35 35 H 1.08998 * 110.61587 * 201.27889 * 5 4 2 36 36 H 1.09006 * 110.90940 * 278.82247 * 6 5 4 37 37 H 1.09003 * 110.91061 * 155.22515 * 6 5 4 38 38 H 1.09003 * 108.52370 * 1.74428 * 12 11 9 39 39 H 1.09004 * 108.40429 * 244.12577 * 12 11 9 40 40 H 1.08999 * 108.99986 * 322.00478 * 13 12 11 41 41 H 1.09002 * 108.93595 * 203.19818 * 13 12 11 42 42 H 1.08994 * 109.74461 * 222.40658 * 16 14 13 43 43 H 1.08995 * 109.74186 * 343.07107 * 16 14 13 44 44 H 0.96996 * 120.00651 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.96671 * 258.92812 * 26 17 16 46 46 H 1.08990 * 109.97124 * 137.66389 * 26 17 16 47 47 H 1.09006 * 109.00560 * 295.49062 * 29 27 26 48 48 H 1.08997 * 109.01200 * 54.27791 * 29 27 26 49 49 H 1.08999 * 110.26900 * 131.22820 * 30 11 9 50 50 H 1.09005 * 110.26305 * 9.12740 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0189 -0.6995 1.1566 5 6 3.2380 -1.3651 0.7626 6 6 2.9196 -1.8903 -0.6603 7 6 2.0540 -0.7464 -1.2422 8 1 1.2246 -1.1502 -1.8227 9 6 2.8945 0.1707 -2.0930 10 8 3.0706 1.3214 -1.7529 11 7 3.4512 -0.2883 -3.2314 12 6 4.2611 0.5364 -4.0820 13 6 5.6566 -0.0050 -4.3297 14 6 5.6723 -1.0398 -5.4315 15 1 4.9326 -0.8003 -6.1955 16 6 7.0673 -1.1513 -6.0591 17 7 7.7087 -2.3597 -5.5321 18 6 8.9541 -2.8107 -5.8798 19 1 9.5465 -2.2618 -6.5968 20 6 9.4551 -3.9734 -5.3106 21 7 8.7330 -4.6427 -4.4371 22 14 11.1542 -4.5883 -5.7843 23 1 12.1667 -3.5568 -5.4434 24 1 11.4524 -5.8396 -5.0424 25 1 11.1940 -4.8574 -7.2441 26 6 6.8082 -3.0102 -4.5746 27 6 5.3961 -2.4531 -4.8372 28 1 4.8503 -3.0694 -5.5515 29 6 4.6372 -2.3597 -3.5253 30 6 3.2719 -1.6958 -3.7043 31 1 -0.3633 -1.0275 0.0180 32 1 -0.3634 0.5293 0.8808 33 1 -0.3634 0.4981 -0.8989 34 1 4.0685 -0.6598 0.7346 35 1 3.4601 -2.1909 1.4385 36 1 2.3541 -2.8211 -0.6140 37 1 3.8332 -2.0205 -1.2404 38 1 4.3480 1.5230 -3.6269 39 1 3.7552 0.6421 -5.0417 40 1 6.0293 -0.4589 -3.4114 41 1 6.3118 0.8202 -4.6086 42 1 6.9787 -1.2243 -7.1430 43 1 7.6603 -0.2753 -5.7964 44 1 9.0831 -5.4550 -4.0391 45 1 7.1169 -2.7769 -3.5557 46 1 6.8172 -4.0891 -4.7289 47 1 4.4940 -3.3638 -3.1257 48 1 5.2249 -1.7773 -2.8158 49 1 2.9815 -1.7070 -4.7548 50 1 2.5223 -2.2050 -3.0984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946836831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:17 Heat of formation + Delta-G solvation = -52.109328 kcal Electronic energy + Delta-G solvation = -29342.661768 eV Core-core repulsion = 25563.433549 eV Total energy + Delta-G solvation = -3779.228218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04096 -39.41965 -38.15238 -35.95222 -33.39629 -32.86634 -32.11377 -31.56010 -30.64747 -27.72307 -27.59843 -26.40068 -24.35710 -23.19756 -22.80531 -22.51676 -21.34864 -20.14246 -19.24425 -18.35860 -17.48783 -16.97948 -16.57382 -16.24502 -15.59466 -15.25741 -15.22578 -15.00358 -14.26707 -14.09448 -13.85325 -13.62311 -13.42036 -13.09008 -13.02555 -12.84419 -12.62166 -12.54717 -12.23718 -11.92931 -11.72047 -11.59783 -11.40792 -11.29737 -11.23726 -11.12806 -11.07833 -10.85898 -10.76515 -10.74218 -10.14351 -10.05303 -9.95105 -9.78172 -9.67921 -9.65461 -9.46107 -8.71048 -8.58351 -6.83181 -5.69446 -3.07856 2.46875 2.87622 3.38666 3.43131 3.44106 3.64183 4.23117 4.28147 4.47810 4.50097 4.70919 4.85463 4.95018 5.00055 5.04868 5.12272 5.14812 5.18560 5.28893 5.35025 5.36261 5.41153 5.46888 5.54021 5.56833 5.63987 5.69553 5.72962 5.73455 5.85185 5.88148 5.94060 5.98518 6.07518 6.12818 6.25829 6.36301 6.47921 6.54328 6.55709 6.64085 6.72212 6.76943 7.00640 7.34475 7.51544 7.63066 7.82817 8.06294 8.32828 9.22223 9.83058 10.46827 11.36468 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.003190 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.052277 B = 8775.355820 C = 9507.846687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.093 0.907 4 O -0.373 6.373 5 C 0.047 3.953 6 C -0.151 4.151 7 C -0.140 4.140 8 H 0.110 0.890 9 C 0.528 3.472 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.110 3.890 13 C -0.124 4.124 14 C -0.092 4.092 15 H 0.066 0.934 16 C 0.142 3.858 17 N -0.602 5.602 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.170 3.830 27 C -0.108 4.108 28 H 0.068 0.932 29 C -0.130 4.130 30 C 0.105 3.895 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.252 0.748 45 H 0.013 0.987 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 5.651 5.058 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.111 0.889 4 O -0.293 6.293 5 C -0.029 4.029 6 C -0.189 4.189 7 C -0.161 4.161 8 H 0.128 0.872 9 C 0.316 3.684 10 O -0.420 6.420 11 N -0.336 5.336 12 C -0.014 4.014 13 C -0.162 4.162 14 C -0.111 4.111 15 H 0.084 0.916 16 C 0.015 3.985 17 N -0.328 5.328 18 C -0.353 4.353 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.045 3.955 27 C -0.128 4.128 28 H 0.086 0.914 29 C -0.168 4.168 30 C -0.017 4.017 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.663 6.113 5.514 18.586 hybrid contribution 1.130 -0.450 -0.623 1.367 sum -15.533 5.663 4.891 17.241 Atomic orbital electron populations 1.21916 0.93497 1.02616 1.02567 1.22776 0.94976 0.97157 0.82881 0.88932 1.88860 1.39631 1.67768 1.33021 1.23549 0.87903 0.96561 0.94907 1.23313 1.00935 0.97530 0.97100 1.22684 0.99206 0.96592 0.97662 0.87159 1.20199 0.79777 0.87897 0.80496 1.90669 1.61562 1.18876 1.70912 1.47963 1.49441 1.13498 1.22695 1.20649 0.91716 0.95076 0.93942 1.21448 0.95388 0.98979 1.00423 1.21806 0.97793 0.95062 0.96454 0.91588 1.21127 0.90857 0.90703 0.95765 1.44186 1.15785 1.24158 1.48654 1.19028 0.90741 1.05427 1.20145 0.90594 1.24775 0.98725 0.97910 0.99117 1.69865 1.36456 1.18618 1.32171 0.86178 0.83700 0.78015 0.77758 1.21233 1.21580 1.21179 1.21414 0.83165 0.99245 0.91629 1.22430 0.99433 0.95809 0.95123 0.91385 1.21934 0.94733 1.00903 0.99253 1.22516 0.98405 0.80255 1.00513 0.91955 0.91637 0.91325 0.91970 0.88498 0.89226 0.88742 0.90038 0.92271 0.90716 0.91052 0.96243 0.96159 0.93766 0.96863 0.89271 0.91201 0.90571 0.89952 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.36 37.16 0.35 -0.95 16 2 C 0.08 0.89 3.67 -26.16 -0.10 0.80 16 3 H 0.09 1.23 6.44 -51.92 -0.33 0.90 16 4 O -0.37 -4.60 11.19 -35.23 -0.39 -4.99 16 5 C 0.05 0.50 7.72 38.21 0.29 0.80 16 6 C -0.15 -1.43 5.54 -24.73 -0.14 -1.57 16 7 C -0.14 -1.42 2.14 -90.24 -0.19 -1.61 16 8 H 0.11 0.89 7.23 -51.93 -0.38 0.51 16 9 C 0.53 6.83 7.03 -10.98 -0.08 6.76 16 10 O -0.54 -8.84 14.75 5.56 0.08 -8.76 16 11 N -0.60 -7.26 2.58 -174.32 -0.45 -7.71 16 12 C 0.11 1.40 5.75 -6.27 -0.04 1.36 16 13 C -0.12 -1.81 4.77 -28.31 -0.13 -1.94 16 14 C -0.09 -1.46 2.77 -89.86 -0.25 -1.71 16 15 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 16 C 0.14 2.86 6.82 -3.79 -0.03 2.83 16 17 N -0.60 -14.99 3.38 -172.15 -0.58 -15.57 16 18 C -0.23 -6.20 10.25 -15.06 -0.15 -6.35 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 21 N -0.92 -26.32 10.16 55.49 0.56 -25.76 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 C 0.17 3.89 5.13 -3.40 -0.02 3.87 16 27 C -0.11 -1.80 2.93 -89.17 -0.26 -2.06 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 C -0.13 -1.71 3.22 -27.38 -0.09 -1.80 16 30 C 0.10 1.08 5.34 -2.41 -0.01 1.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.97 5.16 -51.93 -0.27 0.70 16 38 H 0.08 1.13 6.99 -51.93 -0.36 0.77 16 39 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 40 H 0.07 1.24 5.87 -51.93 -0.30 0.94 16 41 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.42 7.40 -51.93 -0.38 0.03 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.01 0.33 7.72 -51.93 -0.40 -0.07 16 46 H 0.09 2.33 6.19 -51.93 -0.32 2.00 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.08 1.13 4.99 -51.93 -0.26 0.87 16 49 H 0.08 0.80 7.81 -51.93 -0.41 0.40 16 50 H 0.08 0.67 5.71 -51.93 -0.30 0.37 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -31.54 364.67 -9.50 -41.03 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.25 Total: 0.29 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.94 Total: -0.87 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.47 Total: -49.04 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.31 Total: -13.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.54 -9.50 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.075 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds