Wall clock time and date at job start Tue Mar 31 2020 13:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46727 * 2 1 4 4 C 1.50703 * 109.47309 * 239.99984 * 2 1 3 5 5 O 1.21282 * 120.00142 * 274.61263 * 4 2 1 6 6 N 1.34774 * 119.99956 * 94.60771 * 4 2 1 7 7 C 1.46924 * 120.63953 * 174.44100 * 6 4 2 8 8 C 1.53191 * 108.89036 * 126.27979 * 7 6 4 9 9 C 1.53309 * 109.18611 * 54.51767 * 8 7 6 10 10 C 1.52981 * 109.70175 * 298.86174 * 9 8 7 11 11 C 1.46930 * 120.64225 * 354.45972 * 6 4 2 12 12 C 1.53254 * 109.32303 * 178.89877 * 9 8 7 13 13 N 1.47151 * 108.41205 * 187.97206 * 12 9 8 14 14 C 1.36935 * 120.99072 * 230.50195 * 13 12 9 15 15 H 1.07997 * 120.00252 * 145.02716 * 14 13 12 16 16 C 1.38816 * 119.99692 * 325.02261 * 14 13 12 17 17 N 1.31618 * 119.99971 * 4.50541 * 16 14 13 18 18 Si 1.86796 * 119.99969 * 184.50068 * 16 14 13 19 19 H 1.48495 * 109.47287 * 60.00195 * 18 16 14 20 20 H 1.48499 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47309 * 300.00129 * 18 16 14 22 22 C 1.47158 * 118.02356 * 50.47320 * 13 12 9 23 23 C 1.53295 * 108.37721 * 309.41251 * 22 13 12 24 24 O 1.42900 * 109.51942 * 59.14558 * 9 8 7 25 25 C 1.52999 * 109.47159 * 120.00112 * 2 1 3 26 26 C 1.53001 * 117.49839 * 248.74991 * 25 2 1 27 27 C 1.52997 * 117.49960 * 180.08734 * 25 2 1 28 28 H 1.08995 * 109.47553 * 304.98338 * 1 2 3 29 29 H 1.09000 * 109.47174 * 64.99133 * 1 2 3 30 30 H 1.09009 * 109.47076 * 184.98854 * 1 2 3 31 31 H 1.09001 * 109.58725 * 246.13260 * 7 6 4 32 32 H 1.08999 * 109.59039 * 6.41970 * 7 6 4 33 33 H 1.08999 * 109.49164 * 174.60681 * 8 7 6 34 34 H 1.08997 * 109.49461 * 294.68200 * 8 7 6 35 35 H 1.08998 * 109.49326 * 301.25183 * 10 9 8 36 36 H 1.09002 * 109.51468 * 181.18984 * 10 9 8 37 37 H 1.09001 * 109.58427 * 353.43294 * 11 6 4 38 38 H 1.09002 * 109.58865 * 113.71291 * 11 6 4 39 39 H 1.08999 * 109.67714 * 307.70263 * 12 9 8 40 40 H 1.08999 * 109.67610 * 68.20831 * 12 9 8 41 41 H 0.97006 * 120.00125 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.68039 * 69.13391 * 22 13 12 43 43 H 1.08998 * 109.68593 * 189.68733 * 22 13 12 44 44 H 1.09000 * 109.51190 * 172.27773 * 23 22 13 45 45 H 1.09005 * 109.50808 * 292.42715 * 23 22 13 46 46 H 1.09005 * 115.55158 * 34.41679 * 25 2 1 47 47 H 1.08995 * 117.49529 * 359.97438 * 26 25 2 48 48 H 1.08995 * 117.49770 * 145.02424 * 26 25 2 49 49 H 1.09000 * 117.50112 * 214.97981 * 27 25 2 50 50 H 1.08999 * 117.49420 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1549 -1.9170 -1.2265 6 7 2.3454 -0.0049 -2.3353 7 6 2.9500 -0.6662 -3.4997 8 6 2.1121 -0.3471 -4.7418 9 6 1.9742 1.1735 -4.8795 10 6 1.2596 1.7399 -3.6512 11 6 2.0891 1.4405 -2.3985 12 6 1.1596 1.4971 -6.1366 13 7 1.2016 2.9515 -6.3561 14 6 0.0523 3.6669 -6.5623 15 1 -0.0335 4.6731 -6.1796 16 6 -1.0025 3.0987 -7.2635 17 7 -0.9334 1.8434 -7.6531 18 14 -2.5199 4.1157 -7.6541 19 1 -2.1313 5.2881 -8.4784 20 1 -3.4940 3.2832 -8.4046 21 1 -3.1410 4.5841 -6.3891 22 6 2.5153 3.6146 -6.3466 23 6 3.2621 3.1894 -5.0772 24 8 3.2714 1.7623 -4.9922 25 6 2.0400 -0.7213 1.2492 26 6 2.7392 0.1231 2.3165 27 6 3.5550 -0.8263 1.4353 28 1 -0.3634 0.5892 0.8419 29 1 -0.3633 0.4344 -0.9313 30 1 -0.3634 -1.0239 0.0894 31 1 3.9668 -0.2998 -3.6409 32 1 2.9690 -1.7441 -3.3388 33 1 2.6037 -0.7526 -5.6261 34 1 1.1232 -0.7936 -4.6381 35 1 0.2773 1.2771 -3.5563 36 1 1.1444 2.8182 -3.7619 37 1 1.5374 1.7528 -1.5118 38 1 3.0362 1.9778 -2.4477 39 1 1.5912 0.9837 -6.9959 40 1 0.1273 1.1760 -5.9977 41 1 -1.6706 1.4462 -8.1428 42 1 3.0847 3.3135 -7.2259 43 1 2.3807 4.6962 -6.3485 44 1 4.2869 3.5585 -5.1169 45 1 2.7590 3.6029 -4.2031 46 1 1.4318 -1.5595 1.5894 47 1 2.8363 1.1923 2.1284 48 1 2.5915 -0.1599 3.3586 49 1 3.9435 -1.7334 1.8982 50 1 4.1883 -0.3819 0.6675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949332871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:31 Heat of formation + Delta-G solvation = -46.521104 kcal Electronic energy + Delta-G solvation = -29626.916973 eV Core-core repulsion = 25847.931079 eV Total energy + Delta-G solvation = -3778.985895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73672 -40.47903 -38.21221 -37.26367 -36.12778 -34.16404 -33.19541 -33.01444 -31.91239 -29.79359 -28.33184 -25.99435 -25.19294 -24.52112 -24.26580 -23.23914 -22.81373 -21.66583 -20.47769 -19.55398 -18.79394 -18.41803 -17.21324 -17.12607 -16.50772 -16.29483 -16.12479 -16.00323 -15.70894 -15.36346 -15.31183 -15.19018 -14.76878 -14.60215 -14.48352 -13.76381 -13.66418 -13.39008 -13.30705 -13.14434 -12.96923 -12.85185 -12.73129 -12.67142 -12.41564 -12.37727 -12.23941 -12.17954 -12.09497 -11.99957 -11.71005 -11.66313 -11.33609 -11.07183 -10.99310 -10.59748 -10.50839 -10.38676 -9.61164 -8.55367 -7.87604 -5.45052 1.46216 1.48419 1.54556 1.63302 1.98663 2.46968 2.90637 2.93199 3.27436 3.53919 3.58075 3.61408 3.78024 3.93977 4.01862 4.05147 4.10860 4.17849 4.20291 4.34428 4.36552 4.39374 4.45610 4.52126 4.55694 4.62851 4.67980 4.77215 4.80664 4.84621 4.86281 4.88126 4.93026 5.01719 5.02321 5.06253 5.11453 5.17879 5.22630 5.27053 5.32097 5.33076 5.37298 5.55354 5.61637 5.69136 6.37662 6.45999 6.50360 7.12822 7.19155 7.78087 8.35814 9.15103 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.003633 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.042873 B = 7706.110099 C = 8214.144093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.112 0.888 4 C 0.517 3.483 5 O -0.581 6.581 6 N -0.607 5.607 7 C 0.126 3.874 8 C -0.110 4.110 9 C 0.106 3.894 10 C -0.136 4.136 11 C 0.118 3.882 12 C 0.166 3.834 13 N -0.611 5.611 14 C -0.263 4.263 15 H 0.071 0.929 16 C -0.042 4.042 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.272 1.272 22 C 0.104 3.896 23 C 0.052 3.948 24 O -0.384 6.384 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.188 4.188 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.081 0.919 39 H -0.015 1.015 40 H 0.069 0.931 41 H 0.250 0.750 42 H 0.010 0.990 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 0.414 17.971 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.129 0.871 4 C 0.307 3.693 5 O -0.461 6.461 6 N -0.340 5.340 7 C 0.004 3.996 8 C -0.148 4.148 9 C 0.065 3.935 10 C -0.174 4.174 11 C -0.004 4.004 12 C 0.040 3.960 13 N -0.335 5.335 14 C -0.393 4.393 15 H 0.089 0.911 16 C -0.238 4.238 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.203 1.203 20 H -0.224 1.224 21 H -0.197 1.197 22 C -0.021 4.021 23 C -0.026 4.026 24 O -0.303 6.303 25 C -0.165 4.165 26 C -0.189 4.189 27 C -0.225 4.225 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.003 0.997 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.078 0.922 46 H 0.120 0.880 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.112 0.888 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.561 -0.392 17.863 19.401 hybrid contribution -1.230 0.237 -1.368 1.855 sum 6.331 -0.155 16.495 17.668 Atomic orbital electron populations 1.21709 0.91468 1.02831 1.03423 1.20988 0.98351 1.00178 0.90134 0.87052 1.21229 0.76080 0.87222 0.84787 1.90629 1.55372 1.15917 1.84202 1.48246 1.61290 1.09687 1.14732 1.21368 0.96448 0.98100 0.83729 1.21806 1.00775 0.93606 0.98656 1.21986 0.83833 0.92524 0.95185 1.22150 0.98610 1.02323 0.94331 1.21829 1.00584 0.79476 0.98510 1.21232 0.98879 0.84172 0.91673 1.44199 1.01534 1.03691 1.84099 1.19414 0.93088 0.98634 1.28165 0.91110 1.26059 1.02703 0.97346 0.97673 1.70089 1.32877 1.12960 1.42021 0.85374 0.78963 0.78051 0.78232 1.20349 1.22394 1.19738 1.21800 0.86738 0.97364 0.96228 1.23079 1.01367 0.81070 0.97058 1.87791 1.27686 1.20528 1.94340 1.22010 0.95541 1.02353 0.96569 1.23169 1.01588 0.97810 0.96322 1.22906 0.93584 1.02435 1.03543 0.88726 0.92598 0.92897 0.90340 0.90232 0.90569 0.91622 0.92556 0.90176 0.87425 0.90063 0.99719 0.91257 0.94106 0.97220 0.91135 0.86840 0.92248 0.87984 0.87337 0.87190 0.88825 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.05 71.98 0.65 -1.91 16 2 C -0.08 -1.53 2.07 -11.54 -0.02 -1.55 16 3 H 0.11 1.78 5.96 -2.39 -0.01 1.76 16 4 C 0.52 14.56 6.34 87.66 0.56 15.12 16 5 O -0.58 -20.67 15.87 -3.04 -0.05 -20.72 16 6 N -0.61 -16.75 2.97 -818.88 -2.43 -19.19 16 7 C 0.13 3.77 6.20 86.36 0.54 4.31 16 8 C -0.11 -3.72 5.14 30.76 0.16 -3.56 16 9 C 0.11 3.88 0.68 -10.61 -0.01 3.87 16 10 C -0.14 -4.37 4.33 30.65 0.13 -4.23 16 11 C 0.12 2.86 5.91 86.36 0.51 3.37 16 12 C 0.17 7.97 4.04 86.34 0.35 8.32 16 13 N -0.61 -29.58 2.55 -697.61 -1.78 -31.36 16 14 C -0.26 -13.80 9.60 84.03 0.81 -12.99 16 15 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 16 C -0.04 -2.28 5.33 84.86 0.45 -1.82 16 17 N -0.93 -54.17 10.67 21.65 0.23 -53.94 16 18 Si 0.97 43.45 29.56 68.60 2.03 45.47 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 C 0.10 4.12 6.73 86.35 0.58 4.70 16 23 C 0.05 1.61 6.60 72.08 0.48 2.09 16 24 O -0.38 -13.36 9.00 -148.98 -1.34 -14.70 16 25 C -0.15 -2.78 4.66 -10.79 -0.05 -2.84 16 26 C -0.15 -2.07 10.18 30.62 0.31 -1.76 16 27 C -0.19 -3.53 9.87 30.62 0.30 -3.22 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.08 2.25 7.82 -2.39 -0.02 2.23 16 32 H 0.08 2.49 7.00 -2.39 -0.02 2.48 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.74 6.16 -2.39 -0.01 2.73 16 37 H 0.11 2.02 5.49 -2.39 -0.01 2.00 16 38 H 0.08 1.84 7.83 -2.39 -0.02 1.82 16 39 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 40 H 0.07 3.77 6.11 -2.39 -0.01 3.76 16 41 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 44 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.06 1.71 6.29 -2.38 -0.01 1.70 16 46 H 0.10 2.08 8.11 -2.38 -0.02 2.06 16 47 H 0.11 1.20 8.05 -2.39 -0.02 1.18 16 48 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 50 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.81 379.27 3.31 -63.51 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.91 Total: 23.04 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.74 Total: 7.88 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.98 Total: -104.49 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.39 Total: -35.42 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.81 3.31 -63.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949332871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.987 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds