Wall clock time and date at job start Tue Mar 31 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46565 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99792 * 2 1 3 5 5 O 1.21274 * 119.99955 * 86.35038 * 4 2 1 6 6 N 1.34776 * 120.00025 * 266.34770 * 4 2 1 7 7 C 1.47082 * 125.62989 * 175.06734 * 6 4 2 8 8 C 1.54460 * 107.29734 * 179.02097 * 7 6 4 9 9 C 1.54373 * 103.03274 * 338.41281 * 8 7 6 10 10 C 1.47582 * 125.63098 * 355.07072 * 6 4 2 11 11 C 1.52359 * 110.37469 * 152.50685 * 9 8 7 12 12 N 1.47336 * 108.39901 * 73.34667 * 11 9 8 13 13 C 1.36939 * 121.07536 * 229.17123 * 12 11 9 14 14 H 1.07999 * 119.99853 * 151.82334 * 13 12 11 15 15 C 1.38809 * 120.00235 * 331.81210 * 13 12 11 16 16 N 1.31615 * 119.99878 * 345.02417 * 15 13 12 17 17 Si 1.86801 * 120.00132 * 165.01215 * 15 13 12 18 18 H 1.48496 * 109.46763 * 90.00760 * 17 15 13 19 19 H 1.48495 * 109.47363 * 210.00549 * 17 15 13 20 20 H 1.48502 * 109.47178 * 330.01205 * 17 15 13 21 21 C 1.47169 * 117.84506 * 49.18935 * 12 11 9 22 22 C 1.53275 * 108.57257 * 308.78766 * 21 12 11 23 23 O 1.41890 * 110.71364 * 276.38402 * 9 8 7 24 24 C 1.52995 * 109.47158 * 240.00315 * 2 1 3 25 25 C 1.53776 * 113.61506 * 157.49544 * 24 2 1 26 26 C 1.53783 * 87.08439 * 220.01393 * 25 24 2 27 27 C 1.53776 * 113.61813 * 59.99611 * 24 2 1 28 28 H 1.08996 * 109.47458 * 303.44974 * 1 2 3 29 29 H 1.08997 * 109.47203 * 63.45167 * 1 2 3 30 30 H 1.09005 * 109.47060 * 183.45210 * 1 2 3 31 31 H 1.09005 * 109.87426 * 59.60015 * 7 6 4 32 32 H 1.09002 * 110.00531 * 298.52069 * 7 6 4 33 33 H 1.09000 * 110.73300 * 96.84510 * 8 7 6 34 34 H 1.08999 * 110.73760 * 219.97648 * 8 7 6 35 35 H 1.09004 * 110.37037 * 322.12541 * 10 6 4 36 36 H 1.08993 * 110.37610 * 84.35858 * 10 6 4 37 37 H 1.09005 * 109.67863 * 193.07073 * 11 9 8 38 38 H 1.08993 * 109.68219 * 313.57871 * 11 9 8 39 39 H 0.97003 * 119.99903 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.62083 * 68.51770 * 21 12 11 41 41 H 1.09003 * 109.61821 * 188.88596 * 21 12 11 42 42 H 1.09000 * 109.50968 * 172.89877 * 22 21 12 43 43 H 1.08993 * 109.51742 * 293.04457 * 22 21 12 44 44 H 1.09003 * 112.84925 * 288.80022 * 24 2 1 45 45 H 1.09001 * 113.61411 * 334.56974 * 25 24 2 46 46 H 1.09003 * 113.61696 * 105.46613 * 25 24 2 47 47 H 1.08993 * 113.61272 * 270.88634 * 26 25 24 48 48 H 1.08997 * 113.61391 * 139.97570 * 26 25 24 49 49 H 1.09001 * 113.61572 * 254.52834 * 27 24 2 50 50 H 1.08997 * 113.61398 * 25.35063 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1714 -1.9151 1.2209 6 7 2.3270 -0.0069 2.3416 7 6 2.7257 -0.5783 3.6370 8 6 2.9846 0.6018 4.5993 9 6 3.2492 1.7819 3.6399 10 6 2.3029 1.4640 2.4596 11 6 2.8641 3.0995 4.3008 12 7 3.8775 3.4219 5.3206 13 6 3.5130 3.7770 6.5919 14 1 4.1758 3.5745 7.4201 15 6 2.2916 4.3973 6.8160 16 7 1.6185 4.9091 5.8074 17 14 1.6031 4.5055 8.5492 18 1 2.0757 5.7578 9.1922 19 1 0.1192 4.5074 8.4931 20 1 2.0671 3.3374 9.3400 21 6 5.2942 3.3504 4.9285 22 6 5.5505 1.9900 4.2705 23 8 4.6033 1.7903 3.2161 24 6 2.0400 -0.7212 -1.2492 25 6 3.4726 -0.3275 -1.6461 26 6 2.9922 -0.3572 -3.1066 27 6 1.5811 -0.0723 -2.5657 28 1 -0.3634 0.5664 0.8574 29 1 -0.3633 0.4593 -0.9193 30 1 -0.3633 -1.0259 0.0619 31 1 3.6359 -1.1662 3.5182 32 1 1.9266 -1.2076 4.0287 33 1 2.1076 0.7957 5.2168 34 1 3.8579 0.4076 5.2221 35 1 2.6723 1.9243 1.5431 36 1 1.2928 1.8108 2.6771 37 1 2.8327 3.8906 3.5516 38 1 1.8863 3.0017 4.7724 39 1 0.7648 5.3423 5.9640 40 1 5.5186 4.1477 4.2200 41 1 5.9242 3.4573 5.8115 42 1 6.5606 1.9680 3.8613 43 1 5.4407 1.1998 5.0131 44 1 1.8759 -1.7981 -1.2129 45 1 3.7638 0.6650 -1.3022 46 1 4.2152 -1.0913 -1.4151 47 1 3.0897 -1.3348 -3.5785 48 1 3.3975 0.4505 -3.7160 49 1 0.7966 -0.6300 -3.0772 50 1 1.3538 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972431860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:23 Heat of formation + Delta-G solvation = -52.289975 kcal Electronic energy + Delta-G solvation = -29301.990827 eV Core-core repulsion = 25522.754775 eV Total energy + Delta-G solvation = -3779.236052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74878 -40.62040 -39.18783 -37.44210 -36.22964 -34.03104 -33.22945 -32.61013 -30.99027 -29.07491 -27.33992 -27.11560 -26.12036 -25.41525 -24.68792 -23.11578 -22.80280 -20.57658 -20.22090 -19.99484 -18.87279 -18.31882 -17.61606 -17.18203 -16.69269 -16.28706 -16.12879 -15.99969 -15.77561 -15.48284 -15.20833 -15.13445 -14.64563 -14.51153 -14.18493 -13.85943 -13.64894 -13.61983 -13.46885 -13.31357 -13.08016 -13.01470 -12.80526 -12.66779 -12.51379 -12.47871 -12.25421 -12.16057 -12.09425 -11.88180 -11.82612 -11.40801 -11.26624 -11.11998 -11.01870 -10.81878 -10.64935 -10.45988 -9.71769 -8.67220 -7.88534 -5.35761 1.47235 1.50187 1.58147 1.58803 1.92881 2.49071 2.72650 3.23295 3.33284 3.41864 3.61258 3.73511 3.76529 3.83901 3.95449 3.97235 4.06036 4.16359 4.24829 4.29692 4.34361 4.38935 4.43904 4.51392 4.58454 4.67348 4.68488 4.77913 4.82192 4.86982 4.89729 4.90106 4.92185 4.97704 5.04246 5.06607 5.10391 5.11203 5.15127 5.23455 5.26572 5.27336 5.40794 5.53480 5.64270 5.64950 6.32449 6.39771 6.47117 7.10082 7.10859 7.77045 8.32593 9.17618 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.003411 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.831482 B = 8207.732137 C = 8543.939768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.101 0.899 4 C 0.532 3.468 5 O -0.585 6.585 6 N -0.612 5.612 7 C 0.117 3.883 8 C -0.135 4.135 9 C 0.091 3.909 10 C 0.123 3.877 11 C 0.178 3.822 12 N -0.610 5.610 13 C -0.261 4.261 14 H 0.068 0.932 15 C -0.042 4.042 16 N -0.931 5.931 17 Si 0.962 3.038 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.106 3.894 22 C 0.052 3.948 23 O -0.380 6.380 24 C -0.099 4.099 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.122 4.122 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.005 0.995 38 H 0.070 0.930 39 H 0.252 0.748 40 H 0.018 0.982 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -8.203 -13.544 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 H 0.119 0.881 4 C 0.323 3.677 5 O -0.466 6.466 6 N -0.344 5.344 7 C -0.006 4.006 8 C -0.173 4.173 9 C 0.049 3.951 10 C 0.000 4.000 11 C 0.051 3.949 12 N -0.334 5.334 13 C -0.391 4.391 14 H 0.086 0.914 15 C -0.238 4.238 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.196 1.196 21 C -0.020 4.020 22 C -0.025 4.025 23 O -0.299 6.299 24 C -0.118 4.118 25 C -0.184 4.184 26 C -0.172 4.172 27 C -0.159 4.159 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.023 0.977 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.333 -8.823 -13.773 16.360 hybrid contribution -0.287 0.400 1.651 1.723 sum 0.046 -8.423 -12.122 14.761 Atomic orbital electron populations 1.21675 0.91115 1.02455 1.03931 1.21396 0.98730 1.00365 0.91000 0.88088 1.20971 0.76052 0.86841 0.83869 1.90624 1.55772 1.16175 1.84012 1.48658 1.67058 1.07699 1.11007 1.21859 0.99745 0.96018 0.82992 1.22910 1.03127 0.93968 0.97329 1.22560 0.83153 0.95753 0.93664 1.22273 0.99215 0.79622 0.98878 1.20837 0.93692 0.90476 0.89853 1.44286 1.00602 1.79429 1.09091 1.19415 1.03036 1.32054 0.84596 0.91439 1.25729 1.00113 0.97569 1.00360 1.70125 1.15737 1.40376 1.31386 0.85362 0.77128 0.77925 0.80528 1.21447 1.21822 1.19610 1.21750 0.86441 0.95634 0.98151 1.23141 0.92618 0.96478 0.90253 1.87636 1.14775 1.93117 1.34339 1.22461 0.96795 0.99701 0.92810 1.23028 0.96087 1.01350 0.97924 1.22768 0.96669 1.02486 0.95282 1.22921 0.97209 1.01622 0.94192 0.92155 0.88763 0.92946 0.92333 0.91383 0.90486 0.89830 0.88645 0.88677 0.97684 0.91207 0.93911 0.96360 0.91143 0.86660 0.92999 0.90065 0.90045 0.93188 0.89956 0.90284 0.90316 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.03 71.98 0.65 -1.91 16 2 C -0.09 -2.13 2.16 -11.54 -0.02 -2.15 16 3 H 0.10 2.09 6.22 -2.38 -0.01 2.07 16 4 C 0.53 16.36 6.85 87.66 0.60 16.96 16 5 O -0.59 -21.97 16.45 -3.01 -0.05 -22.02 16 6 N -0.61 -18.81 3.33 -811.63 -2.71 -21.52 16 7 C 0.12 3.66 6.88 86.76 0.60 4.26 16 8 C -0.14 -4.54 5.85 31.56 0.18 -4.35 16 9 C 0.09 3.22 0.85 -10.00 -0.01 3.21 16 10 C 0.12 3.69 5.75 86.71 0.50 4.19 16 11 C 0.18 7.87 4.06 86.01 0.35 8.22 16 12 N -0.61 -28.69 2.97 -698.86 -2.07 -30.76 16 13 C -0.26 -13.47 9.64 84.03 0.81 -12.66 16 14 H 0.07 3.40 7.87 -2.91 -0.02 3.38 16 15 C -0.04 -2.19 4.98 84.86 0.42 -1.76 16 16 N -0.93 -51.51 11.20 21.65 0.24 -51.27 16 17 Si 0.96 42.59 29.58 68.60 2.03 44.62 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 C 0.11 4.13 6.71 86.34 0.58 4.71 16 22 C 0.05 1.71 6.78 72.07 0.49 2.19 16 23 O -0.38 -13.55 10.29 -148.95 -1.53 -15.08 16 24 C -0.10 -2.09 2.89 -10.27 -0.03 -2.12 16 25 C -0.15 -3.04 7.62 31.12 0.24 -2.80 16 26 C -0.13 -2.11 8.08 31.12 0.25 -1.85 16 27 C -0.12 -1.83 6.61 31.12 0.21 -1.62 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.32 7.33 -2.39 -0.02 1.31 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.73 7.83 -2.39 -0.02 2.71 16 34 H 0.08 2.82 6.07 -2.39 -0.01 2.81 16 35 H 0.10 2.61 6.90 -2.38 -0.02 2.59 16 36 H 0.10 2.70 8.01 -2.39 -0.02 2.69 16 37 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.07 3.43 6.08 -2.39 -0.01 3.42 16 39 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 42 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.05 1.66 6.22 -2.39 -0.01 1.65 16 44 H 0.08 2.04 7.64 -2.39 -0.02 2.02 16 45 H 0.08 1.68 7.96 -2.39 -0.02 1.66 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 Total: -1.00 -63.92 381.97 2.63 -61.29 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.91 Total: 22.23 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.81 Total: 12.51 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -4.54 Total: -103.55 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -1.58 Total: -37.10 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -63.92 2.63 -61.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972431860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.996 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds