Wall clock time and date at job start Tue Mar 31 2020 13:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.27358 * 2 1 4 4 C 1.55204 * 110.45630 * 238.03988 * 2 1 3 5 5 C 1.55311 * 100.82574 * 204.75699 * 4 2 1 6 6 H 1.08997 * 110.84404 * 275.59526 * 5 4 2 7 7 C 1.50698 * 110.84731 * 152.17827 * 5 4 2 8 8 O 1.21286 * 120.00064 * 2.76868 * 7 5 4 9 9 N 1.34772 * 119.99861 * 182.49372 * 7 5 4 10 10 C 1.46504 * 119.99967 * 180.27631 * 9 7 5 11 11 C 1.53006 * 115.54702 * 180.02562 * 10 9 7 12 12 C 1.53034 * 109.46265 * 85.64999 * 11 10 9 13 13 C 1.53187 * 109.31365 * 178.61242 * 12 11 10 14 14 N 1.46927 * 108.77726 * 54.63430 * 13 12 11 15 15 C 1.36936 * 120.63009 * 126.36902 * 14 13 12 16 16 H 1.07996 * 119.99718 * 208.01932 * 15 14 13 17 17 C 1.38806 * 119.99956 * 28.02418 * 15 14 13 18 18 N 1.31615 * 120.00226 * 17.52518 * 17 15 14 19 19 Si 1.86803 * 120.00021 * 197.52353 * 17 15 14 20 20 H 1.48491 * 109.47233 * 94.06477 * 19 17 15 21 21 H 1.48504 * 109.47182 * 214.07280 * 19 17 15 22 22 H 1.48504 * 109.47016 * 334.06696 * 19 17 15 23 23 C 1.46922 * 118.73793 * 306.39285 * 14 13 12 24 24 C 1.53037 * 109.45895 * 325.57600 * 11 10 9 25 25 C 1.52994 * 117.49712 * 34.33034 * 10 9 7 26 26 C 1.52999 * 117.49738 * 325.66999 * 10 9 7 27 27 C 1.54381 * 102.43662 * 33.88556 * 5 4 2 28 28 O 1.43237 * 107.58937 * 338.74570 * 27 5 4 29 29 H 1.08993 * 109.47437 * 299.36436 * 1 2 3 30 30 H 1.09001 * 109.46754 * 59.37003 * 1 2 3 31 31 H 1.08997 * 109.46605 * 179.36144 * 1 2 3 32 32 H 1.09002 * 111.30518 * 86.82261 * 4 2 1 33 33 H 1.08999 * 111.05276 * 322.57801 * 4 2 1 34 34 H 0.97006 * 120.00271 * 0.27545 * 9 7 5 35 35 H 1.09004 * 109.45401 * 205.60871 * 11 10 9 36 36 H 1.09002 * 109.49749 * 298.56342 * 12 11 10 37 37 H 1.09005 * 109.49598 * 58.65847 * 12 11 10 38 38 H 1.09007 * 109.58593 * 294.84837 * 13 12 11 39 39 H 1.09006 * 109.70577 * 174.49146 * 13 12 11 40 40 H 0.97002 * 120.00018 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.58827 * 293.82472 * 23 14 13 42 42 H 1.08994 * 109.70576 * 173.46614 * 23 14 13 43 43 H 1.08995 * 109.50558 * 301.34142 * 24 11 10 44 44 H 1.09010 * 109.49619 * 61.41090 * 24 11 10 45 45 H 1.08993 * 117.50327 * 359.97438 * 25 10 9 46 46 H 1.09006 * 117.49399 * 145.02434 * 25 10 9 47 47 H 1.08998 * 117.49747 * 214.98221 * 26 10 9 48 48 H 1.08998 * 117.50089 * 359.97438 * 26 10 9 49 49 H 1.08996 * 109.82936 * 98.25600 * 27 5 4 50 50 H 1.08996 * 109.83117 * 219.23295 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0725 -0.7697 -1.2337 5 6 3.4723 -1.2001 -0.7167 6 1 4.2014 -0.4031 -0.8623 7 6 3.9263 -2.4690 -1.3912 8 8 3.2395 -2.9775 -2.2518 9 7 5.0982 -3.0356 -1.0419 10 6 5.5425 -4.2658 -1.7019 11 6 6.8867 -4.8211 -1.2266 12 6 6.6671 -5.7046 0.0035 13 6 8.0101 -6.2864 0.4556 14 7 8.9568 -5.1827 0.6665 15 6 9.6234 -5.0530 1.8556 16 1 9.9404 -4.0773 2.1932 17 6 9.8919 -6.1754 2.6268 18 7 9.8287 -7.3746 2.0881 19 14 10.3429 -5.9840 4.4295 20 1 9.1207 -6.1164 5.2623 21 1 11.3181 -7.0372 4.8103 22 1 10.9488 -4.6460 4.6487 23 6 9.1741 -4.2206 -0.4224 24 6 7.8179 -3.6619 -0.8647 25 6 5.1873 -4.4426 -3.1795 26 6 4.4679 -5.2739 -2.1143 27 6 3.2126 -1.4393 0.7862 28 8 2.0286 -0.7157 1.1414 29 1 -0.3634 0.5039 0.8956 30 1 -0.3633 0.5236 -0.8843 31 1 -0.3632 -1.0276 -0.0115 32 1 2.1581 -0.1163 -2.1020 33 1 1.4524 -1.6378 -1.4573 34 1 5.6476 -2.6289 -0.3536 35 1 7.3368 -5.4135 -2.0232 36 1 6.2399 -5.1071 0.8089 37 1 5.9852 -6.5167 -0.2488 38 1 8.3954 -6.9564 -0.3131 39 1 7.8774 -6.8369 1.3871 40 1 10.0166 -8.1589 2.6270 41 1 9.6542 -4.7221 -1.2627 42 1 9.8082 -3.4062 -0.0722 43 1 7.9552 -3.0201 -1.7349 44 1 7.3796 -3.0834 -0.0514 45 1 4.6228 -3.6440 -3.6605 46 1 5.9113 -4.9549 -3.8133 47 1 4.7189 -6.3325 -2.0477 48 1 3.4305 -5.0220 -1.8942 49 1 3.0650 -2.5033 0.9711 50 1 4.0578 -1.0750 1.3701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000200552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:50 Heat of formation + Delta-G solvation = -40.072622 kcal Electronic energy + Delta-G solvation = -28657.508983 eV Core-core repulsion = 24878.802716 eV Total energy + Delta-G solvation = -3778.706267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90531 -39.47702 -37.88747 -36.00215 -33.43789 -32.81937 -32.52262 -31.55541 -30.37034 -29.75819 -26.41531 -25.60511 -23.98684 -22.74161 -22.58141 -21.64828 -21.49952 -20.39582 -19.84674 -18.88004 -17.72119 -17.18561 -16.77023 -15.86212 -15.57904 -15.02967 -14.87613 -14.81658 -14.14692 -13.98479 -13.82327 -13.61266 -13.56386 -13.47607 -12.99378 -12.83897 -12.78026 -12.68425 -12.32842 -12.16044 -11.61906 -11.52399 -11.36874 -11.33145 -11.19301 -11.09795 -10.95563 -10.75810 -10.70759 -10.41818 -10.27991 -10.08217 -9.97281 -9.88114 -9.64298 -9.57343 -9.36198 -8.54242 -8.44184 -6.70079 -5.81327 -3.23857 2.41728 2.96441 3.35979 3.43356 3.44315 3.48618 3.98274 4.09454 4.38237 4.47421 4.52855 4.71018 4.76935 4.81955 4.87206 5.01943 5.13804 5.20005 5.31179 5.34319 5.36004 5.39734 5.42405 5.55891 5.56592 5.64476 5.67679 5.72882 5.80440 5.88587 5.91401 5.94061 6.07337 6.14971 6.27154 6.42050 6.45591 6.52184 6.62161 6.69999 6.70543 6.71818 6.79019 6.90703 7.34401 7.46467 7.63619 7.77312 8.11777 8.42674 9.18930 9.82462 10.39094 11.27082 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003243 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.564898 B = 8631.718529 C = 9841.321424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.072 0.928 4 C -0.129 4.129 5 C -0.149 4.149 6 H 0.111 0.889 7 C 0.523 3.477 8 O -0.533 6.533 9 N -0.686 5.686 10 C 0.107 3.893 11 C -0.042 4.042 12 C -0.132 4.132 13 C 0.170 3.830 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.126 4.126 25 C -0.179 4.179 26 C -0.175 4.175 27 C 0.064 3.936 28 O -0.376 6.376 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.018 0.982 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.075 0.925 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 12.767 -7.794 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.171 4.171 6 H 0.129 0.871 7 C 0.309 3.691 8 O -0.411 6.411 9 N -0.336 5.336 10 C 0.020 3.980 11 C -0.061 4.061 12 C -0.171 4.171 13 C 0.044 3.956 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.019 3.981 24 C -0.165 4.165 25 C -0.218 4.218 26 C -0.213 4.213 27 C -0.013 4.013 28 O -0.295 6.295 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.122 0.878 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.122 0.878 49 H 0.093 0.907 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.803 12.255 -8.098 20.854 hybrid contribution 0.697 0.208 1.024 1.256 sum -14.106 12.463 -7.074 20.108 Atomic orbital electron populations 1.21876 0.93464 1.03061 1.02418 1.23063 0.95184 0.95504 0.84590 0.91028 1.23253 0.93847 1.01521 0.98048 1.22944 1.00130 0.97218 0.96782 0.87129 1.20153 0.80905 0.85211 0.82858 1.90660 1.54772 1.63649 1.31981 1.45471 1.21264 1.25957 1.40908 1.20977 0.95985 0.86697 0.94341 1.20784 0.89732 0.96832 0.98745 1.22235 1.00698 0.98266 0.95906 1.20786 0.84981 0.89264 1.00530 1.44061 1.46555 1.29227 1.11620 1.19186 1.31459 0.92315 0.95339 0.91703 1.25039 0.99819 0.95638 0.99106 1.70036 1.52679 0.97338 1.34552 0.86294 0.77830 0.77273 0.85484 1.21467 1.21797 1.20401 1.20876 0.92805 0.93120 0.91308 1.22031 0.98340 0.96739 0.99430 1.23433 1.03261 1.03432 0.91649 1.23341 0.98562 0.96476 1.02968 1.23055 0.88612 0.97598 0.92048 1.88444 1.42234 1.64954 1.33916 0.91772 0.91131 0.91761 0.89481 0.88773 0.75611 0.90318 0.92767 0.93055 0.96473 0.89465 0.93630 0.96445 0.92768 0.92903 0.92726 0.87849 0.89069 0.88818 0.87786 0.90678 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.63 37.16 0.36 -0.78 16 2 C 0.07 0.65 4.07 -25.56 -0.10 0.54 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.17 5.71 -24.34 -0.14 -1.31 16 5 C -0.15 -1.42 3.38 -89.82 -0.30 -1.72 16 6 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.52 6.42 6.71 -10.99 -0.07 6.34 16 8 O -0.53 -7.93 11.20 5.55 0.06 -7.87 16 9 N -0.69 -8.48 5.37 -47.61 -0.26 -8.73 16 10 C 0.11 1.49 2.48 -131.82 -0.33 1.16 16 11 C -0.04 -0.65 2.28 -90.58 -0.21 -0.86 16 12 C -0.13 -2.38 5.22 -26.62 -0.14 -2.52 16 13 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 14 N -0.59 -14.18 2.99 -172.32 -0.52 -14.69 16 15 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 16 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 18 N -0.90 -25.77 11.22 55.49 0.62 -25.15 16 19 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.15 2.87 6.51 -3.71 -0.02 2.84 16 24 C -0.13 -1.97 4.83 -26.61 -0.13 -2.10 16 25 C -0.18 -2.46 9.37 -26.70 -0.25 -2.71 16 26 C -0.18 -2.49 8.91 -26.69 -0.24 -2.73 16 27 C 0.06 0.65 7.39 37.88 0.28 0.93 16 28 O -0.38 -4.28 11.04 -35.23 -0.39 -4.67 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.01 7.33 -51.93 -0.38 0.63 16 34 H 0.41 4.59 6.66 -40.82 -0.27 4.32 16 35 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.87 7.24 -51.93 -0.38 0.49 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.83 6.50 -51.92 -0.34 0.49 16 45 H 0.10 1.52 6.37 -51.93 -0.33 1.18 16 46 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 47 H 0.09 1.29 7.60 -51.93 -0.39 0.89 16 48 H 0.10 1.60 6.38 -51.93 -0.33 1.27 16 49 H 0.07 0.84 7.81 -51.93 -0.41 0.43 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -30.26 380.61 -9.90 -40.16 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.58 Total: 4.83 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.54 Total: -5.91 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.15 Total: -48.58 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.33 Total: -12.54 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.26 -9.90 -40.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000200552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.086 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds