Wall clock time and date at job start Tue Mar 31 2020 13:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.27358 * 2 1 4 4 C 1.55204 * 110.45630 * 238.03988 * 2 1 3 5 5 C 1.55311 * 100.82574 * 204.75699 * 4 2 1 6 6 H 1.08997 * 110.84404 * 275.59526 * 5 4 2 7 7 C 1.50698 * 110.84731 * 152.17827 * 5 4 2 8 8 O 1.21286 * 120.00064 * 2.76868 * 7 5 4 9 9 N 1.34772 * 119.99861 * 182.49372 * 7 5 4 10 10 C 1.46504 * 119.99967 * 180.27631 * 9 7 5 11 11 C 1.53006 * 115.54702 * 180.02562 * 10 9 7 12 12 C 1.53034 * 109.46265 * 85.64999 * 11 10 9 13 13 C 1.53187 * 109.31365 * 178.61242 * 12 11 10 14 14 N 1.46927 * 108.77726 * 54.63430 * 13 12 11 15 15 C 1.36936 * 120.63009 * 126.36902 * 14 13 12 16 16 H 1.07996 * 119.99718 * 208.01932 * 15 14 13 17 17 C 1.38806 * 119.99956 * 28.02418 * 15 14 13 18 18 N 1.31615 * 120.00226 * 17.52518 * 17 15 14 19 19 Si 1.86803 * 120.00021 * 197.52353 * 17 15 14 20 20 H 1.48491 * 109.47233 * 94.06477 * 19 17 15 21 21 H 1.48504 * 109.47182 * 214.07280 * 19 17 15 22 22 H 1.48504 * 109.47016 * 334.06696 * 19 17 15 23 23 C 1.46922 * 118.73793 * 306.39285 * 14 13 12 24 24 C 1.53037 * 109.45895 * 325.57600 * 11 10 9 25 25 C 1.52994 * 117.49712 * 34.33034 * 10 9 7 26 26 C 1.52999 * 117.49738 * 325.66999 * 10 9 7 27 27 C 1.54381 * 102.43662 * 33.88556 * 5 4 2 28 28 O 1.43237 * 107.58937 * 338.74570 * 27 5 4 29 29 H 1.08993 * 109.47437 * 299.36436 * 1 2 3 30 30 H 1.09001 * 109.46754 * 59.37003 * 1 2 3 31 31 H 1.08997 * 109.46605 * 179.36144 * 1 2 3 32 32 H 1.09002 * 111.30518 * 86.82261 * 4 2 1 33 33 H 1.08999 * 111.05276 * 322.57801 * 4 2 1 34 34 H 0.97006 * 120.00271 * 0.27545 * 9 7 5 35 35 H 1.09004 * 109.45401 * 205.60871 * 11 10 9 36 36 H 1.09002 * 109.49749 * 298.56342 * 12 11 10 37 37 H 1.09005 * 109.49598 * 58.65847 * 12 11 10 38 38 H 1.09007 * 109.58593 * 294.84837 * 13 12 11 39 39 H 1.09006 * 109.70577 * 174.49146 * 13 12 11 40 40 H 0.97002 * 120.00018 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.58827 * 293.82472 * 23 14 13 42 42 H 1.08994 * 109.70576 * 173.46614 * 23 14 13 43 43 H 1.08995 * 109.50558 * 301.34142 * 24 11 10 44 44 H 1.09010 * 109.49619 * 61.41090 * 24 11 10 45 45 H 1.08993 * 117.50327 * 359.97438 * 25 10 9 46 46 H 1.09006 * 117.49399 * 145.02434 * 25 10 9 47 47 H 1.08998 * 117.49747 * 214.98221 * 26 10 9 48 48 H 1.08998 * 117.50089 * 359.97438 * 26 10 9 49 49 H 1.08996 * 109.82936 * 98.25600 * 27 5 4 50 50 H 1.08996 * 109.83117 * 219.23295 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0725 -0.7697 -1.2337 5 6 3.4723 -1.2001 -0.7167 6 1 4.2014 -0.4031 -0.8623 7 6 3.9263 -2.4690 -1.3912 8 8 3.2395 -2.9775 -2.2518 9 7 5.0982 -3.0356 -1.0419 10 6 5.5425 -4.2658 -1.7019 11 6 6.8867 -4.8211 -1.2266 12 6 6.6671 -5.7046 0.0035 13 6 8.0101 -6.2864 0.4556 14 7 8.9568 -5.1827 0.6665 15 6 9.6234 -5.0530 1.8556 16 1 9.9404 -4.0773 2.1932 17 6 9.8919 -6.1754 2.6268 18 7 9.8287 -7.3746 2.0881 19 14 10.3429 -5.9840 4.4295 20 1 9.1207 -6.1164 5.2623 21 1 11.3181 -7.0372 4.8103 22 1 10.9488 -4.6460 4.6487 23 6 9.1741 -4.2206 -0.4224 24 6 7.8179 -3.6619 -0.8647 25 6 5.1873 -4.4426 -3.1795 26 6 4.4679 -5.2739 -2.1143 27 6 3.2126 -1.4393 0.7862 28 8 2.0286 -0.7157 1.1414 29 1 -0.3634 0.5039 0.8956 30 1 -0.3633 0.5236 -0.8843 31 1 -0.3632 -1.0276 -0.0115 32 1 2.1581 -0.1163 -2.1020 33 1 1.4524 -1.6378 -1.4573 34 1 5.6476 -2.6289 -0.3536 35 1 7.3368 -5.4135 -2.0232 36 1 6.2399 -5.1071 0.8089 37 1 5.9852 -6.5167 -0.2488 38 1 8.3954 -6.9564 -0.3131 39 1 7.8774 -6.8369 1.3871 40 1 10.0166 -8.1589 2.6270 41 1 9.6542 -4.7221 -1.2627 42 1 9.8082 -3.4062 -0.0722 43 1 7.9552 -3.0201 -1.7349 44 1 7.3796 -3.0834 -0.0514 45 1 4.6228 -3.6440 -3.6605 46 1 5.9113 -4.9549 -3.8133 47 1 4.7189 -6.3325 -2.0477 48 1 3.4305 -5.0220 -1.8942 49 1 3.0650 -2.5033 0.9711 50 1 4.0578 -1.0750 1.3701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000200552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:49 Heat of formation + Delta-G solvation = -58.019593 kcal Electronic energy + Delta-G solvation = -28658.287222 eV Core-core repulsion = 24878.802716 eV Total energy + Delta-G solvation = -3779.484506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88014 -40.41093 -39.17139 -37.40264 -34.58754 -34.41351 -33.26734 -32.35226 -32.07793 -31.39932 -27.45214 -27.02995 -25.04934 -24.13217 -24.08068 -22.93507 -22.19489 -21.49798 -21.14794 -20.19879 -18.79249 -18.50458 -17.92640 -16.93029 -16.71938 -16.53884 -15.86673 -15.79807 -15.59456 -15.27602 -15.09267 -14.87696 -14.67837 -14.64396 -14.49814 -14.32207 -13.90887 -13.44199 -13.39068 -13.10034 -12.96325 -12.86150 -12.69443 -12.56738 -12.37505 -12.28855 -12.12773 -12.00580 -11.93756 -11.91067 -11.82420 -11.71380 -11.54051 -11.13707 -10.95345 -10.71172 -10.52182 -10.45925 -9.58459 -8.65827 -7.85574 -5.30287 1.46795 1.47568 1.49476 1.57789 2.00873 2.52666 2.76509 2.95283 3.24625 3.28689 3.54504 3.60176 3.73341 3.80314 3.88337 3.99995 4.02008 4.09342 4.20718 4.24930 4.35809 4.45139 4.48512 4.57097 4.64019 4.66337 4.68102 4.76049 4.79823 4.81595 4.86854 4.94293 4.97835 5.04482 5.05474 5.16839 5.18455 5.25595 5.26606 5.29336 5.33902 5.38579 5.52032 5.61633 5.68556 5.78916 5.99661 6.41420 6.50325 7.16615 7.17357 7.89539 8.40642 9.20650 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003243 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.564898 B = 8631.718529 C = 9841.321424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.091 0.909 4 C -0.126 4.126 5 C -0.140 4.140 6 H 0.139 0.861 7 C 0.522 3.478 8 O -0.560 6.560 9 N -0.683 5.683 10 C 0.111 3.889 11 C -0.032 4.032 12 C -0.116 4.116 13 C 0.177 3.823 14 N -0.609 5.609 15 C -0.258 4.258 16 H 0.069 0.931 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.963 3.037 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.266 1.266 23 C 0.140 3.860 24 C -0.112 4.112 25 C -0.168 4.168 26 C -0.180 4.180 27 C 0.063 3.937 28 O -0.399 6.399 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.061 0.939 38 H -0.006 1.006 39 H 0.050 0.950 40 H 0.248 0.752 41 H 0.012 0.988 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 15.348 -8.320 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.162 4.162 6 H 0.157 0.843 7 C 0.310 3.690 8 O -0.439 6.439 9 N -0.333 5.333 10 C 0.024 3.976 11 C -0.051 4.051 12 C -0.155 4.155 13 C 0.051 3.949 14 N -0.333 5.333 15 C -0.388 4.388 16 H 0.087 0.913 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.792 3.208 20 H -0.215 1.215 21 H -0.225 1.225 22 H -0.190 1.190 23 C 0.015 3.985 24 C -0.151 4.151 25 C -0.206 4.206 26 C -0.219 4.219 27 C -0.014 4.014 28 O -0.319 6.319 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.012 0.988 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.109 0.891 49 H 0.076 0.924 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.277 14.878 -8.633 23.006 hybrid contribution 0.837 -0.599 1.139 1.535 sum -14.440 14.279 -7.493 21.646 Atomic orbital electron populations 1.21902 0.92893 1.02548 1.03460 1.23262 0.95775 0.96025 0.83561 0.89109 1.23231 0.93206 1.01066 0.98883 1.22954 1.00946 0.96364 0.95892 0.84318 1.20599 0.80309 0.85705 0.82411 1.90656 1.55418 1.64536 1.33337 1.45432 1.21571 1.25379 1.40944 1.20709 0.94824 0.87298 0.94812 1.20615 0.90792 0.96433 0.97300 1.21993 0.97693 0.98847 0.96984 1.20567 0.87253 0.88991 0.98049 1.44319 1.46751 1.29960 1.12220 1.19535 1.30517 0.92363 0.96407 0.91320 1.25770 1.00745 0.95465 1.02762 1.70188 1.54514 0.97870 1.35669 0.85310 0.77200 0.77368 0.80935 1.21489 1.22523 1.19040 1.21058 0.95397 0.92237 0.89852 1.21880 0.95618 0.96810 1.00839 1.23408 1.02942 1.02930 0.91338 1.23295 0.97962 0.96805 1.03814 1.23069 0.88857 0.96715 0.92719 1.88426 1.42770 1.65376 1.35316 0.91631 0.89175 0.93083 0.87734 0.90941 0.74803 0.90453 0.93097 0.92088 0.98772 0.93165 0.94263 0.96987 0.92461 0.89983 0.91787 0.88504 0.87838 0.88506 0.89070 0.92445 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.63 71.98 0.69 -1.35 16 2 C 0.07 1.09 4.07 31.35 0.13 1.21 16 3 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.13 -2.03 5.71 32.14 0.18 -1.84 16 5 C -0.14 -2.31 3.38 -10.28 -0.03 -2.35 16 6 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 7 C 0.52 11.81 6.71 87.66 0.59 12.39 16 8 O -0.56 -15.99 11.20 -3.05 -0.03 -16.02 16 9 N -0.68 -15.25 5.37 -422.92 -2.27 -17.52 16 10 C 0.11 2.86 2.48 3.60 0.01 2.87 16 11 C -0.03 -0.94 2.28 -10.77 -0.02 -0.97 16 12 C -0.12 -4.12 5.22 30.67 0.16 -3.96 16 13 C 0.18 8.29 5.31 86.36 0.46 8.75 16 14 N -0.61 -29.19 2.99 -699.10 -2.09 -31.28 16 15 C -0.26 -13.74 9.58 84.03 0.81 -12.93 16 16 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 17 C -0.05 -2.87 4.90 84.86 0.42 -2.46 16 18 N -0.94 -55.07 11.22 21.65 0.24 -54.82 16 19 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 C 0.14 5.33 6.51 86.37 0.56 5.89 16 24 C -0.11 -3.21 4.83 30.67 0.15 -3.06 16 25 C -0.17 -4.25 9.37 30.62 0.29 -3.96 16 26 C -0.18 -4.91 8.91 30.62 0.27 -4.63 16 27 C 0.06 1.18 7.39 72.45 0.54 1.71 16 28 O -0.40 -8.49 11.04 -148.98 -1.65 -10.14 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.50 7.33 -2.39 -0.02 1.49 16 34 H 0.41 8.09 6.66 -92.70 -0.62 7.48 16 35 H 0.08 2.33 7.90 -2.38 -0.02 2.31 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 2.03 7.24 -2.38 -0.02 2.02 16 38 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 39 H 0.05 2.71 6.06 -2.38 -0.01 2.70 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 1.73 6.50 -2.38 -0.02 1.72 16 45 H 0.10 2.65 6.37 -2.39 -0.02 2.63 16 46 H 0.10 2.37 8.05 -2.38 -0.02 2.35 16 47 H 0.10 2.55 7.60 -2.39 -0.02 2.53 16 48 H 0.09 2.76 6.38 -2.39 -0.02 2.74 16 49 H 0.06 1.25 7.81 -2.39 -0.02 1.23 16 50 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -66.46 380.61 1.72 -64.73 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.31 Total: 23.42 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.19 Total: -4.69 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.12 Total: -103.63 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.68 Total: -26.16 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.46 1.72 -64.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000200552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.714 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds