Wall clock time and date at job start Tue Mar 31 2020 14:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.46661 * 2 1 4 4 C 1.52998 * 109.47031 * 240.00321 * 2 1 3 5 5 C 1.53000 * 109.47519 * 64.99549 * 4 2 1 6 6 H 1.09000 * 109.86600 * 53.99315 * 5 4 2 7 7 C 1.54097 * 109.88167 * 174.99995 * 5 4 2 8 8 C 1.54811 * 104.18675 * 121.45406 * 7 5 4 9 9 C 1.54996 * 102.09204 * 20.88359 * 8 7 5 10 10 O 1.43746 * 109.88000 * 292.83690 * 5 4 2 11 11 C 1.50697 * 109.47163 * 120.00034 * 2 1 3 12 12 O 1.21286 * 119.99857 * 102.69025 * 11 2 1 13 13 N 1.34774 * 119.99917 * 282.69195 * 11 2 1 14 14 C 1.47169 * 120.70712 * 185.88734 * 13 11 2 15 15 C 1.53888 * 108.03317 * 132.74919 * 14 13 11 16 16 H 1.08993 * 112.58002 * 182.22630 * 15 14 13 17 17 C 1.54140 * 107.70412 * 306.32312 * 15 14 13 18 18 C 1.54282 * 104.89028 * 89.41358 * 17 15 14 19 19 C 1.54546 * 104.84648 * 359.80135 * 18 17 15 20 20 H 1.09007 * 112.17755 * 146.40957 * 19 18 17 21 21 C 1.49238 * 120.77110 * 5.95817 * 13 11 2 22 22 N 1.48306 * 104.35946 * 24.70794 * 19 18 17 23 23 C 1.36933 * 128.07882 * 139.07897 * 22 19 18 24 24 H 1.07999 * 120.00055 * 345.22337 * 23 22 19 25 25 C 1.38813 * 120.00342 * 165.22595 * 23 22 19 26 26 N 1.31620 * 119.99580 * 350.55289 * 25 23 22 27 27 Si 1.86797 * 120.00240 * 170.55285 * 25 23 22 28 28 H 1.48499 * 109.46988 * 179.97438 * 27 25 23 29 29 H 1.48497 * 109.47001 * 299.99913 * 27 25 23 30 30 H 1.48498 * 109.47301 * 59.99788 * 27 25 23 31 31 H 1.08996 * 109.46453 * 292.04455 * 1 2 3 32 32 H 1.08992 * 109.47058 * 52.04714 * 1 2 3 33 33 H 1.09000 * 109.46667 * 172.05071 * 1 2 3 34 34 H 1.08996 * 109.47068 * 184.99844 * 4 2 1 35 35 H 1.09010 * 109.46771 * 304.99716 * 4 2 1 36 36 H 1.08998 * 110.48645 * 240.13388 * 7 5 4 37 37 H 1.08997 * 110.48616 * 2.64483 * 7 5 4 38 38 H 1.09007 * 110.90335 * 139.07980 * 8 7 5 39 39 H 1.08992 * 110.90928 * 262.67932 * 8 7 5 40 40 H 1.09003 * 110.61585 * 81.47244 * 9 8 7 41 41 H 1.08995 * 110.61824 * 204.31330 * 9 8 7 42 42 H 1.08997 * 109.74946 * 13.10763 * 14 13 11 43 43 H 1.09005 * 109.78664 * 252.40512 * 14 13 11 44 44 H 1.08993 * 110.50564 * 330.46815 * 17 15 14 45 45 H 1.09003 * 110.17891 * 208.18249 * 17 15 14 46 46 H 1.09001 * 110.35899 * 240.96328 * 18 17 15 47 47 H 1.08996 * 110.36341 * 118.64599 * 18 17 15 48 48 H 1.09004 * 110.51927 * 107.82690 * 21 13 11 49 49 H 1.09004 * 109.75120 * 346.60240 * 21 13 11 50 50 H 0.97005 * 119.99582 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6353 0.0689 -2.4954 6 1 1.9764 1.1004 -2.4069 7 6 2.2500 -0.5805 -3.7503 8 6 1.0281 -0.9267 -4.6356 9 6 -0.0606 0.0216 -4.0716 10 8 0.2069 0.0353 -2.6528 11 6 2.0325 -0.7104 1.2304 12 8 2.4521 -1.8452 1.1466 13 7 2.0153 -0.0847 2.4240 14 6 2.6188 -0.7125 3.6104 15 6 3.4974 0.3390 4.3108 16 1 4.0138 -0.0611 5.1833 17 6 4.4785 0.9025 3.2639 18 6 3.7381 2.0985 2.6302 19 6 2.3716 2.1452 3.3505 20 1 2.0033 3.1643 3.4687 21 6 1.3829 1.2589 2.5727 22 7 2.6206 1.4846 4.6548 23 6 2.1547 1.8504 5.8893 24 1 1.7298 2.8323 6.0370 25 6 2.2285 0.9593 6.9512 26 7 2.5706 -0.2933 6.7364 27 14 1.8423 1.5380 8.6847 28 1 1.9924 0.4029 9.6304 29 1 2.7793 2.6259 9.0637 30 1 0.4476 2.0450 8.7382 31 1 -0.3632 0.3857 0.9525 32 1 -0.3633 0.6320 -0.8103 33 1 -0.3633 -1.0178 -0.1421 34 1 3.1264 -0.7994 -1.2056 35 1 1.6054 -1.7198 -1.2952 36 1 2.9049 0.1242 -4.2626 37 1 2.7980 -1.4839 -3.4828 38 1 1.2317 -0.7055 -5.6834 39 1 0.7390 -1.9699 -4.5088 40 1 0.0462 1.0216 -4.4920 41 1 -1.0560 -0.3740 -4.2732 42 1 3.2315 -1.5612 3.3065 43 1 1.8349 -1.0486 4.2891 44 1 4.7026 0.1509 2.5072 45 1 5.3949 1.2380 3.7497 46 1 3.5982 1.9349 1.5616 47 1 4.2904 3.0220 2.8043 48 1 0.4457 1.1811 3.1239 49 1 1.1976 1.6897 1.5887 50 1 2.6218 -0.9161 7.4783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029603632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:49 Heat of formation + Delta-G solvation = -69.168667 kcal Electronic energy + Delta-G solvation = -29416.817407 eV Core-core repulsion = 25636.849441 eV Total energy + Delta-G solvation = -3779.967967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65622 -40.41582 -39.37354 -35.75530 -35.20279 -34.09846 -33.02605 -32.26027 -31.08813 -30.54134 -27.92305 -26.99626 -25.72323 -25.41388 -23.86869 -22.75153 -21.71030 -21.22817 -20.96680 -19.94817 -18.67283 -17.81966 -17.33423 -16.97257 -16.68208 -16.42262 -16.34091 -16.19890 -15.57825 -15.32169 -14.69052 -14.60292 -14.51089 -14.40554 -14.38504 -13.70351 -13.55028 -13.23196 -13.20311 -13.14293 -13.10812 -12.86402 -12.68300 -12.60114 -12.48621 -12.29302 -12.12722 -12.00585 -11.79731 -11.75374 -11.62013 -11.47324 -11.44438 -11.39814 -11.11265 -10.78822 -10.50835 -10.43562 -9.69279 -8.69553 -7.84153 -5.19794 1.48968 1.50551 1.56780 1.74862 2.13422 2.51817 3.01568 3.35279 3.46681 3.54980 3.70881 3.83702 4.06990 4.08565 4.10373 4.13324 4.16150 4.26225 4.33047 4.36293 4.36924 4.46290 4.50583 4.66844 4.70034 4.74048 4.78726 4.87359 4.88300 4.94893 4.98920 4.99552 5.02900 5.08254 5.10951 5.12236 5.18209 5.19043 5.27062 5.30606 5.37087 5.42433 5.46771 5.55153 5.59046 5.85879 6.11834 6.23668 6.65435 7.06449 7.29871 7.74357 8.53184 9.27345 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.003064 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.978192 B = 9136.109119 C = 9226.078791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 H 0.115 0.885 4 C -0.092 4.092 5 C 0.081 3.919 6 H 0.084 0.916 7 C -0.153 4.153 8 C -0.152 4.152 9 C 0.036 3.964 10 O -0.385 6.385 11 C 0.507 3.493 12 O -0.601 6.601 13 N -0.596 5.596 14 C 0.130 3.870 15 C 0.167 3.833 16 H 0.076 0.924 17 C -0.128 4.128 18 C -0.109 4.109 19 C 0.125 3.875 20 H 0.096 0.904 21 C 0.102 3.898 22 N -0.605 5.605 23 C -0.231 4.231 24 H 0.084 0.916 25 C -0.059 4.059 26 N -0.940 5.940 27 Si 0.972 3.028 28 H -0.301 1.301 29 H -0.280 1.280 30 H -0.279 1.279 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.032 0.968 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.114 0.886 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 5.591 -23.153 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 H 0.133 0.867 4 C -0.130 4.130 5 C 0.023 3.977 6 H 0.102 0.898 7 C -0.190 4.190 8 C -0.190 4.190 9 C -0.040 4.040 10 O -0.305 6.305 11 C 0.297 3.703 12 O -0.483 6.483 13 N -0.327 5.327 14 C 0.005 3.995 15 C 0.059 3.941 16 H 0.094 0.906 17 C -0.167 4.167 18 C -0.148 4.148 19 C 0.018 3.982 20 H 0.114 0.886 21 C -0.021 4.021 22 N -0.326 5.326 23 C -0.360 4.360 24 H 0.101 0.899 25 C -0.253 4.253 26 N -0.588 5.588 27 Si 0.801 3.199 28 H -0.228 1.228 29 H -0.206 1.206 30 H -0.205 1.205 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.132 0.868 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.002 4.955 -22.739 23.359 hybrid contribution -0.051 -0.649 1.589 1.717 sum -2.053 4.307 -21.150 21.681 Atomic orbital electron populations 1.21779 0.91705 1.02465 1.02670 1.21301 0.98570 1.00866 0.90902 0.86729 1.21574 1.00725 0.98751 0.91966 1.22780 0.81485 0.99209 0.94193 0.89790 1.23011 0.98785 1.01892 0.95350 1.23115 0.94833 1.00322 1.00723 1.23720 0.99785 0.99439 0.81021 1.88955 1.22000 1.95434 1.24152 1.21413 0.77545 0.86054 0.85329 1.90606 1.50727 1.20311 1.86696 1.48741 1.55971 1.19849 1.08168 1.21867 0.96508 0.95793 0.85325 1.21602 0.89972 0.88084 0.94466 0.90633 1.22441 0.98186 0.98208 0.97844 1.22409 0.95673 0.97629 0.99081 1.22277 0.94413 0.96007 0.85481 0.88642 1.22966 0.95771 0.81818 1.01591 1.45340 1.55085 1.30210 1.02005 1.19301 1.33877 0.97496 0.85318 0.89872 1.25570 1.02682 0.95312 1.01758 1.70056 1.54929 1.03290 1.30496 0.85252 0.78070 0.76463 0.80069 1.22814 1.20579 1.20459 0.93118 0.88106 0.94240 0.90732 0.92728 0.88904 0.91016 0.88520 0.91432 0.90926 0.88620 0.93096 0.94915 0.92774 0.92756 0.90227 0.90988 0.93153 0.86813 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.91 71.99 0.57 -2.63 16 2 C -0.10 -2.46 1.87 -11.54 -0.02 -2.49 16 3 H 0.11 2.37 6.90 -2.39 -0.02 2.36 16 4 C -0.09 -2.19 3.64 30.59 0.11 -2.08 16 5 C 0.08 1.40 3.36 30.97 0.10 1.51 16 6 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 7 C -0.15 -2.09 6.64 31.58 0.21 -1.88 16 8 C -0.15 -1.81 7.15 31.90 0.23 -1.58 16 9 C 0.04 0.47 7.72 72.66 0.56 1.04 16 10 O -0.39 -7.39 8.05 -148.98 -1.20 -8.59 16 11 C 0.51 18.48 6.90 87.66 0.60 19.09 16 12 O -0.60 -26.74 15.61 -3.05 -0.05 -26.78 16 13 N -0.60 -22.93 2.28 -809.54 -1.85 -24.78 16 14 C 0.13 6.13 5.78 86.55 0.50 6.63 16 15 C 0.17 7.84 3.10 45.33 0.14 7.98 16 16 H 0.08 4.18 6.37 -2.39 -0.02 4.16 16 17 C -0.13 -4.83 6.16 31.41 0.19 -4.64 16 18 C -0.11 -3.39 6.19 31.55 0.20 -3.19 16 19 C 0.13 4.46 4.27 45.47 0.19 4.65 16 20 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 21 C 0.10 3.36 4.84 86.15 0.42 3.78 16 22 N -0.60 -28.59 2.80 -637.47 -1.79 -30.37 16 23 C -0.23 -12.12 10.37 84.03 0.87 -11.25 16 24 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 25 C -0.06 -3.24 5.42 84.86 0.46 -2.78 16 26 N -0.94 -54.79 10.42 21.65 0.23 -54.56 16 27 Si 0.97 44.73 29.56 68.60 2.03 46.75 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 30 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 31 H 0.05 1.29 6.59 -2.39 -0.02 1.27 16 32 H 0.10 2.15 5.92 -2.39 -0.01 2.14 16 33 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.55 8.07 -2.38 -0.02 1.54 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.11 7.70 -2.39 -0.02 1.09 16 38 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 2.49 7.17 -2.39 -0.02 2.47 16 43 H 0.03 1.80 7.82 -2.38 -0.02 1.79 16 44 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 45 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.08 2.06 7.86 -2.39 -0.02 2.04 16 47 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.11 2.74 5.29 -2.39 -0.01 2.73 16 50 H 0.25 14.21 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -68.38 372.73 3.62 -64.76 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.91 Total: 21.42 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.34 Total: 12.15 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -3.41 Total: -109.71 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.25 Total: -35.37 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -68.38 3.62 -64.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029603632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.409 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds