Wall clock time and date at job start Tue Mar 31 2020 13:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.27269 * 2 1 4 4 C 1.54947 * 110.39442 * 237.85681 * 2 1 3 5 5 C 1.55305 * 100.94425 * 204.59649 * 4 2 1 6 6 H 1.08998 * 110.84418 * 275.94481 * 5 4 2 7 7 C 1.50700 * 110.84853 * 152.31831 * 5 4 2 8 8 O 1.21277 * 120.00003 * 5.71901 * 7 5 4 9 9 N 1.34772 * 119.99782 * 185.71105 * 7 5 4 10 10 C 1.46925 * 120.56679 * 359.72744 * 9 7 5 11 11 C 1.52876 * 108.93925 * 234.21226 * 10 9 7 12 12 C 1.52278 * 109.48778 * 306.70066 * 11 10 9 13 13 C 1.54511 * 110.20618 * 182.06554 * 12 11 10 14 14 C 1.55021 * 101.53422 * 153.21901 * 13 12 11 15 15 N 1.47481 * 104.90441 * 323.62463 * 14 13 12 16 16 C 1.36934 * 125.66279 * 203.99361 * 15 14 13 17 17 H 1.08001 * 119.99922 * 180.02562 * 16 15 14 18 18 C 1.38817 * 120.00098 * 0.02562 * 16 15 14 19 19 N 1.31615 * 119.99464 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00152 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47100 * 89.99767 * 20 18 16 22 22 H 1.48494 * 109.47308 * 210.00085 * 20 18 16 23 23 H 1.48498 * 109.47056 * 330.00264 * 20 18 16 24 24 C 1.47173 * 108.67473 * 24.01374 * 15 14 13 25 25 C 1.52274 * 111.26799 * 59.50608 * 12 11 10 26 26 C 1.46934 * 120.56260 * 180.02562 * 9 7 5 27 27 C 1.54387 * 102.24962 * 34.12994 * 5 4 2 28 28 O 1.43236 * 107.59079 * 338.64624 * 27 5 4 29 29 H 1.08998 * 109.46997 * 299.36318 * 1 2 3 30 30 H 1.08997 * 109.47228 * 59.36011 * 1 2 3 31 31 H 1.08997 * 109.46722 * 179.35970 * 1 2 3 32 32 H 1.09002 * 111.12827 * 86.67315 * 4 2 1 33 33 H 1.09008 * 111.12113 * 322.51283 * 4 2 1 34 34 H 1.09004 * 109.59322 * 354.02075 * 10 9 7 35 35 H 1.09004 * 109.60180 * 114.48869 * 10 9 7 36 36 H 1.09004 * 109.54642 * 186.63368 * 11 10 9 37 37 H 1.09000 * 109.35366 * 66.65129 * 11 10 9 38 38 H 1.08993 * 111.01720 * 271.28943 * 13 12 11 39 39 H 1.09010 * 111.00979 * 35.16127 * 13 12 11 40 40 H 1.08996 * 110.36005 * 204.76067 * 14 13 12 41 41 H 1.09008 * 110.44148 * 82.52573 * 14 13 12 42 42 H 0.97010 * 119.99966 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.90793 * 239.12457 * 24 15 14 44 44 H 1.08996 * 109.91233 * 117.86271 * 24 15 14 45 45 H 1.09000 * 109.47436 * 180.38791 * 25 12 11 46 46 H 1.08998 * 109.48868 * 60.36516 * 25 12 11 47 47 H 1.08999 * 109.59716 * 245.51663 * 26 9 7 48 48 H 1.09002 * 109.59278 * 5.97968 * 26 9 7 49 49 H 1.09001 * 109.82619 * 98.16119 * 27 5 4 50 50 H 1.09004 * 109.82781 * 219.03947 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7727 -1.2297 5 6 3.4723 -1.2001 -0.7170 6 1 4.1987 -0.4006 -0.8626 7 6 3.9262 -2.4689 -1.3915 8 8 3.2639 -2.9505 -2.2861 9 7 5.0682 -3.0684 -1.0006 10 6 5.8833 -2.4925 0.0777 11 6 7.3132 -2.3026 -0.4286 12 6 7.8295 -3.6174 -0.9976 13 6 9.2928 -3.4577 -1.4673 14 6 9.8231 -4.9076 -1.3279 15 7 9.1611 -5.4394 -0.1220 16 6 9.6268 -6.4636 0.6584 17 1 9.0652 -6.7809 1.5247 18 6 10.8208 -7.0942 0.3361 19 7 11.5053 -6.7072 -0.7193 20 14 11.4565 -8.4910 1.4012 21 1 10.9255 -9.7816 0.8936 22 1 12.9405 -8.5134 1.3541 23 1 11.0086 -8.2883 2.8024 24 6 7.9165 -4.6867 0.1030 25 6 6.9576 -4.1014 -2.1484 26 6 5.5227 -4.3056 -1.6500 27 6 3.2126 -1.4394 0.7860 28 8 2.0286 -0.7157 1.1413 29 1 -0.3633 0.5039 0.8956 30 1 -0.3633 0.5237 -0.8842 31 1 -0.3633 -1.0276 -0.0115 32 1 2.1516 -0.1201 -2.0990 33 1 1.4506 -1.6422 -1.4503 34 1 5.4702 -1.5279 0.3727 35 1 5.8878 -3.1679 0.9332 36 1 7.9530 -1.9872 0.3957 37 1 7.3223 -1.5407 -1.2079 38 1 9.3363 -3.1234 -2.5038 39 1 9.8404 -2.7768 -0.8154 40 1 10.9051 -4.9047 -1.1963 41 1 9.5499 -5.4986 -2.2022 42 1 12.3395 -7.1481 -0.9447 43 1 7.9432 -4.2097 1.0827 44 1 7.0600 -5.3575 0.0372 45 1 7.3484 -5.0453 -2.5283 46 1 6.9629 -3.3585 -2.9460 47 1 5.4984 -5.1255 -0.9322 48 1 4.8720 -4.5359 -2.4937 49 1 3.0651 -2.5034 0.9708 50 1 4.0586 -1.0765 1.3697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035201675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:22 Heat of formation + Delta-G solvation = -56.618231 kcal Electronic energy + Delta-G solvation = -28871.227503 eV Core-core repulsion = 25091.803764 eV Total energy + Delta-G solvation = -3779.423739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98056 -39.56090 -38.32267 -35.85455 -33.33445 -32.71586 -32.25990 -31.00356 -30.53089 -28.93759 -26.47264 -26.15011 -25.01915 -23.77684 -22.95705 -21.90523 -21.52399 -20.16255 -19.62890 -18.01784 -17.39517 -17.01317 -16.60689 -16.28209 -15.59364 -15.24032 -15.13988 -14.71455 -14.56311 -13.99657 -13.89494 -13.76291 -13.54939 -13.40272 -12.85183 -12.77681 -12.70690 -12.46964 -12.23792 -12.17973 -11.99711 -11.59960 -11.56366 -11.36076 -11.21762 -11.13529 -11.03265 -10.93922 -10.86417 -10.69342 -10.18927 -10.08154 -9.98928 -9.78297 -9.73479 -9.67551 -9.45706 -8.65071 -8.58304 -6.83090 -5.66080 -3.07395 2.46662 2.86423 3.38846 3.43998 3.44748 3.45723 3.97167 4.25905 4.47976 4.48871 4.66468 4.68546 4.80159 4.85843 4.94682 5.01448 5.07703 5.18062 5.23384 5.32044 5.36138 5.37984 5.46243 5.50523 5.53349 5.55469 5.63198 5.68921 5.78499 5.80513 5.85985 5.89773 5.92685 6.03076 6.12411 6.22664 6.29929 6.34248 6.53416 6.60080 6.67332 6.70448 6.76522 6.93272 7.33766 7.51405 7.61978 7.85513 8.04999 8.35791 9.21522 9.82716 10.48093 11.37614 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.002737 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.445795 B =10227.105114 C =10541.228104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.073 0.927 4 C -0.130 4.130 5 C -0.147 4.147 6 H 0.111 0.889 7 C 0.525 3.475 8 O -0.542 6.542 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.116 4.116 12 C -0.071 4.071 13 C -0.135 4.135 14 C 0.153 3.847 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.146 3.854 25 C -0.112 4.112 26 C 0.110 3.890 27 C 0.063 3.937 28 O -0.377 6.377 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.011 0.989 42 H 0.251 0.749 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.045 15.339 -0.326 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.169 4.169 6 H 0.129 0.871 7 C 0.312 3.688 8 O -0.420 6.420 9 N -0.335 5.335 10 C -0.023 4.023 11 C -0.155 4.155 12 C -0.072 4.072 13 C -0.174 4.174 14 C 0.029 3.971 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.020 3.980 25 C -0.150 4.150 26 C -0.012 4.012 27 C -0.014 4.014 28 O -0.297 6.297 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.302 14.915 -0.572 22.103 hybrid contribution 0.686 -0.768 0.314 1.076 sum -15.617 14.146 -0.258 21.073 Atomic orbital electron populations 1.21880 0.93463 1.03061 1.02434 1.23022 0.95204 0.95498 0.84574 0.90958 1.23221 0.93917 1.01527 0.98142 1.22889 0.99929 0.97388 0.96669 0.87068 1.20132 0.80583 0.85042 0.83010 1.90684 1.54768 1.65629 1.30894 1.48128 1.22405 1.26219 1.36733 1.21942 0.91689 0.98878 0.89785 1.21740 0.94824 0.97803 1.01101 1.20991 0.95928 0.94411 0.95826 1.23013 0.93982 1.01137 0.99278 1.21922 1.00650 0.86718 0.87845 1.44544 1.20750 1.38409 1.29215 1.19063 1.03241 1.07376 1.05296 0.90613 1.24777 0.97720 1.00031 0.98178 1.69807 1.16642 1.43320 1.27322 0.86092 0.77990 0.81967 0.79576 1.21671 1.21683 1.20733 1.21340 0.90275 0.91794 0.94550 1.21714 0.93460 1.02444 0.97388 1.21763 0.95789 0.85300 0.98301 1.23227 0.88405 0.97543 0.92195 1.88438 1.42290 1.64934 1.34023 0.91783 0.91102 0.91767 0.89443 0.88859 0.89974 0.90533 0.90320 0.91857 0.92513 0.92162 0.87859 0.97129 0.93783 0.96089 0.96055 0.89914 0.92190 0.90728 0.89291 0.90744 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.63 37.16 0.36 -0.72 16 2 C 0.07 0.62 4.07 -25.70 -0.10 0.52 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.18 5.65 -24.48 -0.14 -1.32 16 5 C -0.15 -1.40 2.42 -89.82 -0.22 -1.62 16 6 H 0.11 0.86 7.81 -51.93 -0.41 0.45 16 7 C 0.52 6.73 6.96 -10.99 -0.08 6.66 16 8 O -0.54 -8.78 15.17 5.56 0.08 -8.70 16 9 N -0.60 -7.54 2.97 -172.91 -0.51 -8.05 16 10 C 0.10 1.07 5.38 -3.87 -0.02 1.05 16 11 C -0.12 -1.43 4.69 -27.16 -0.13 -1.55 16 12 C -0.07 -1.12 0.53 -154.09 -0.08 -1.20 16 13 C -0.14 -2.44 5.99 -24.87 -0.15 -2.59 16 14 C 0.15 3.61 5.57 -2.44 -0.01 3.60 16 15 N -0.60 -14.94 3.40 -170.22 -0.58 -15.52 16 16 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.15 2.85 5.44 -3.31 -0.02 2.83 16 25 C -0.11 -1.69 4.78 -26.96 -0.13 -1.82 16 26 C 0.11 1.56 6.14 -3.67 -0.02 1.54 16 27 C 0.06 0.59 6.10 37.88 0.23 0.82 16 28 O -0.38 -4.02 11.04 -35.23 -0.39 -4.41 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.01 7.39 -51.92 -0.38 0.63 16 34 H 0.08 0.67 4.35 -51.93 -0.23 0.44 16 35 H 0.08 0.85 7.47 -51.93 -0.39 0.46 16 36 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 39 H 0.06 1.07 8.01 -51.92 -0.42 0.65 16 40 H 0.10 2.78 5.88 -51.93 -0.31 2.47 16 41 H 0.01 0.27 7.76 -51.92 -0.40 -0.13 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.02 0.41 7.59 -51.93 -0.39 0.01 16 44 H 0.02 0.43 6.07 -51.93 -0.32 0.11 16 45 H 0.08 1.41 7.49 -51.93 -0.39 1.02 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.10 6.53 -51.93 -0.34 0.76 16 48 H 0.09 1.31 6.99 -51.93 -0.36 0.95 16 49 H 0.07 0.77 7.81 -51.93 -0.41 0.36 16 50 H 0.08 0.61 6.74 -51.93 -0.35 0.26 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -31.65 369.78 -9.47 -41.12 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.43 Total: -0.41 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.76 Total: -0.45 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.53 Total: -49.62 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.30 Total: -13.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.65 -9.47 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035201675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.495 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds