Wall clock time and date at job start Tue Mar 31 2020 13:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.48177 * 2 1 4 4 O 1.42908 * 109.49157 * 120.02548 * 2 1 3 5 5 C 1.42897 * 114.10182 * 181.14958 * 4 2 1 6 6 C 1.53090 * 109.41393 * 298.84111 * 5 4 2 7 7 C 1.53185 * 109.16299 * 57.60938 * 6 5 4 8 8 C 1.53092 * 109.48462 * 239.97229 * 2 1 3 9 9 H 1.08995 * 109.52365 * 302.30666 * 8 2 1 10 10 C 1.50700 * 109.51794 * 62.49494 * 8 2 1 11 11 O 1.21275 * 120.00619 * 23.37804 * 10 8 2 12 12 N 1.34784 * 119.99663 * 203.38303 * 10 8 2 13 13 C 1.46938 * 120.44205 * 5.04579 * 12 10 8 14 14 C 1.54071 * 108.29522 * 125.71397 * 13 12 10 15 15 H 1.09001 * 110.52349 * 172.27739 * 14 13 12 16 16 C 1.53368 * 109.34021 * 294.24961 * 14 13 12 17 17 C 1.53007 * 109.25691 * 60.53882 * 16 14 13 18 18 C 1.54190 * 110.61855 * 59.71173 * 17 16 14 19 19 C 1.53369 * 109.08512 * 301.02086 * 18 17 16 20 20 H 1.09005 * 110.59469 * 176.62424 * 19 18 17 21 21 C 1.46944 * 120.44404 * 185.31935 * 12 10 8 22 22 N 1.47567 * 108.49773 * 55.14462 * 19 18 17 23 23 C 1.36936 * 121.61389 * 122.02432 * 22 19 18 24 24 H 1.08004 * 119.99710 * 16.90345 * 23 22 19 25 25 C 1.38813 * 120.00300 * 196.90327 * 23 22 19 26 26 N 1.31622 * 119.99729 * 32.70711 * 25 23 22 27 27 Si 1.86793 * 120.00079 * 212.71076 * 25 23 22 28 28 H 1.48510 * 109.47142 * 94.99744 * 27 25 23 29 29 H 1.48499 * 109.47274 * 214.99530 * 27 25 23 30 30 H 1.48503 * 109.47388 * 334.99705 * 27 25 23 31 31 H 1.08998 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47541 * 300.00281 * 1 2 3 33 33 H 1.09001 * 109.47081 * 60.00562 * 1 2 3 34 34 H 1.08998 * 109.48075 * 178.85635 * 5 4 2 35 35 H 1.09000 * 109.48014 * 58.82698 * 5 4 2 36 36 H 1.08994 * 109.52505 * 297.70186 * 6 5 4 37 37 H 1.09006 * 109.52038 * 177.51232 * 6 5 4 38 38 H 1.08999 * 109.54399 * 183.14993 * 7 6 5 39 39 H 1.08999 * 109.61279 * 62.92741 * 7 6 5 40 40 H 1.09009 * 109.62627 * 245.47628 * 13 12 10 41 41 H 1.08996 * 109.62896 * 6.03911 * 13 12 10 42 42 H 1.08996 * 109.50671 * 180.47239 * 16 14 13 43 43 H 1.09001 * 109.50921 * 300.56111 * 16 14 13 44 44 H 1.08997 * 109.42457 * 180.67632 * 17 16 14 45 45 H 1.09000 * 109.41706 * 300.54509 * 17 16 14 46 46 H 1.09000 * 110.81846 * 180.38939 * 18 17 16 47 47 H 1.09005 * 108.37246 * 60.17627 * 18 17 16 48 48 H 1.09006 * 109.62249 * 353.96778 * 21 12 10 49 49 H 1.08997 * 109.62791 * 114.34351 * 21 12 10 50 50 H 0.96998 * 119.99953 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 8 2.0068 -0.6741 1.1664 5 6 3.4309 -0.7090 1.2790 6 6 4.0179 -1.4596 0.0808 7 6 3.5712 -0.7705 -1.2123 8 6 2.0406 -0.7222 -1.2495 9 1 1.6446 -1.7374 -1.2709 10 6 1.5902 0.0215 -2.4804 11 8 1.3140 1.2003 -2.4096 12 7 1.4941 -0.6235 -3.6600 13 6 1.7187 -2.0736 -3.7361 14 6 0.4896 -2.7190 -4.4042 15 1 0.6731 -3.7749 -4.6031 16 6 -0.7327 -2.5459 -3.4941 17 6 -0.9990 -1.0537 -3.2853 18 6 -1.2669 -0.3560 -4.6339 19 6 -0.0499 -0.5467 -5.5476 20 1 -0.2366 -0.1135 -6.5303 21 6 1.1691 0.1151 -4.8881 22 7 0.2285 -1.9914 -5.6612 23 6 0.2442 -2.6262 -6.8745 24 1 0.3241 -2.0498 -7.7844 25 6 0.1574 -4.0103 -6.9349 26 7 -0.5450 -4.6655 -6.0351 27 14 1.0376 -4.9428 -8.2931 28 1 2.3616 -5.4015 -7.8010 29 1 0.2240 -6.1187 -8.6937 30 1 1.2271 -4.0498 -9.4644 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.7103 -1.2198 2.2004 35 1 3.8193 0.3094 1.2958 36 1 3.6618 -2.4898 0.0863 37 1 5.1062 -1.4491 0.1420 38 1 3.9393 -1.3322 -2.0708 39 1 3.9689 0.2439 -1.2424 40 1 2.6101 -2.2753 -4.3302 41 1 1.8458 -2.4776 -2.7318 42 1 -1.6022 -3.0090 -3.9605 43 1 -0.5401 -3.0201 -2.5317 44 1 -1.8601 -0.9276 -2.6290 45 1 -0.1246 -0.5900 -2.8288 46 1 -1.4503 0.7087 -4.4896 47 1 -2.1417 -0.8177 -5.0919 48 1 0.9348 1.1507 -4.6413 49 1 2.0193 0.0845 -5.5695 50 1 -0.6060 -5.6326 -6.0775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039559421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:26 Heat of formation + Delta-G solvation = -38.386373 kcal Electronic energy + Delta-G solvation = -30898.588637 eV Core-core repulsion = 27119.955491 eV Total energy + Delta-G solvation = -3778.633146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.05787 -39.24177 -37.55371 -34.21798 -33.65579 -32.81493 -32.76286 -31.76498 -30.33978 -28.19537 -26.85925 -25.71456 -24.77571 -23.56813 -22.41052 -21.62817 -21.37732 -20.66716 -19.10160 -18.28664 -17.45896 -16.57716 -16.07807 -15.78376 -15.28212 -15.01465 -14.87019 -14.49522 -14.22121 -13.92374 -13.76928 -13.55187 -13.04426 -12.99697 -12.90706 -12.64395 -12.40305 -12.29815 -12.18073 -11.98530 -11.76958 -11.54411 -11.41531 -11.30392 -11.12408 -11.03044 -10.89782 -10.71257 -10.39777 -10.32862 -10.17162 -10.05023 -10.00604 -9.69984 -9.49724 -9.43121 -9.18534 -8.51464 -7.92285 -6.82360 -5.93623 -3.16718 2.86530 3.31003 3.33582 3.43992 3.44484 3.76886 4.42545 4.52650 4.64698 4.73057 4.78429 4.97674 5.04490 5.16514 5.20353 5.27639 5.42666 5.44895 5.58689 5.64984 5.66679 5.69820 5.72186 5.78590 5.78962 5.81904 5.90331 5.92832 5.97666 5.99969 6.10013 6.18862 6.22339 6.30173 6.33721 6.39325 6.43447 6.59312 6.67936 6.81024 6.94678 7.02163 7.05641 7.16780 7.37950 7.44866 7.71644 7.86041 8.21771 8.48289 9.04241 9.71747 10.29723 11.14076 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.004519 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.153192 B = 6194.240547 C = 6686.328913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.108 3.892 3 H 0.069 0.931 4 O -0.378 6.378 5 C 0.059 3.941 6 C -0.154 4.154 7 C -0.110 4.110 8 C -0.143 4.143 9 H 0.104 0.896 10 C 0.525 3.475 11 O -0.556 6.556 12 N -0.586 5.586 13 C 0.084 3.916 14 C 0.170 3.830 15 H 0.118 0.882 16 C -0.115 4.115 17 C -0.137 4.137 18 C -0.124 4.124 19 C 0.153 3.847 20 H 0.077 0.923 21 C 0.101 3.899 22 N -0.578 5.578 23 C -0.253 4.253 24 H 0.073 0.927 25 C 0.004 3.996 26 N -0.884 5.884 27 Si 0.886 3.114 28 H -0.289 1.289 29 H -0.294 1.294 30 H -0.279 1.279 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 6.211 11.622 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.050 3.950 3 H 0.087 0.913 4 O -0.297 6.297 5 C -0.017 4.017 6 C -0.191 4.191 7 C -0.148 4.148 8 C -0.164 4.164 9 H 0.122 0.878 10 C 0.314 3.686 11 O -0.435 6.435 12 N -0.318 5.318 13 C -0.040 4.040 14 C 0.063 3.937 15 H 0.135 0.865 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.163 4.163 19 C 0.045 3.955 20 H 0.095 0.905 21 C -0.023 4.023 22 N -0.299 5.299 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.195 4.195 26 N -0.527 5.527 27 Si 0.716 3.284 28 H -0.216 1.216 29 H -0.221 1.221 30 H -0.205 1.205 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.585 6.556 11.725 14.961 hybrid contribution 0.558 -0.697 -1.000 1.341 sum 7.144 5.859 10.725 14.156 Atomic orbital electron populations 1.21861 0.92587 1.02896 1.03137 1.21831 0.95419 0.94834 0.82867 0.91350 1.87947 1.20716 1.78280 1.42765 1.22564 0.81454 0.99519 0.98210 1.22193 1.01160 1.00787 0.94988 1.21517 0.92927 1.01761 0.98631 1.22065 0.97806 1.02116 0.94411 0.87828 1.20002 0.77071 0.87156 0.84384 1.90650 1.51242 1.16227 1.85418 1.48155 1.67138 1.09264 1.07272 1.22808 1.01302 0.79088 1.00758 1.21331 0.89296 0.98456 0.84665 0.86462 1.21807 1.01198 0.94567 0.97817 1.22261 1.01082 0.97214 0.96978 1.22129 0.99320 0.98044 0.96822 1.21168 0.91129 0.86716 0.96461 0.90522 1.22227 0.99029 0.95996 0.85052 1.44566 1.80254 1.02233 1.02843 1.19174 1.44613 0.89496 0.84812 0.90895 1.24669 0.99568 0.97210 0.98037 1.70200 1.36942 1.07519 1.38073 0.86497 0.80242 0.79614 0.82028 1.21587 1.22082 1.20461 0.91938 0.91933 0.90052 0.88887 0.93272 0.90624 0.90546 0.90675 0.91302 0.91694 0.90900 0.91027 0.94415 0.94888 0.90367 0.93548 0.92630 0.89998 0.91978 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.30 37.16 0.35 -1.67 16 2 C 0.11 1.47 2.41 -26.68 -0.06 1.41 16 3 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 4 O -0.38 -4.89 10.41 -35.23 -0.37 -5.26 16 5 C 0.06 0.58 6.84 37.20 0.25 0.84 16 6 C -0.15 -1.45 6.14 -26.59 -0.16 -1.61 16 7 C -0.11 -1.27 5.29 -26.54 -0.14 -1.41 16 8 C -0.14 -1.95 1.44 -91.63 -0.13 -2.08 16 9 H 0.10 1.44 6.11 -51.93 -0.32 1.12 16 10 C 0.52 8.57 3.49 -10.98 -0.04 8.53 16 11 O -0.56 -10.35 14.41 5.56 0.08 -10.27 16 12 N -0.59 -9.97 1.64 -171.95 -0.28 -10.25 16 13 C 0.08 1.46 5.71 -3.24 -0.02 1.44 16 14 C 0.17 3.57 2.82 -66.59 -0.19 3.38 16 15 H 0.12 2.81 5.60 -51.93 -0.29 2.52 16 16 C -0.11 -2.31 5.64 -26.54 -0.15 -2.46 16 17 C -0.14 -2.56 5.58 -26.11 -0.15 -2.71 16 18 C -0.12 -2.38 5.68 -25.92 -0.15 -2.52 16 19 C 0.15 3.03 3.58 -66.85 -0.24 2.79 16 20 H 0.08 1.49 8.01 -51.93 -0.42 1.08 16 21 C 0.10 1.79 5.89 -3.50 -0.02 1.77 16 22 N -0.58 -13.07 2.57 -155.15 -0.40 -13.47 16 23 C -0.25 -6.41 9.67 -15.06 -0.15 -6.56 16 24 H 0.07 1.85 8.01 -52.48 -0.42 1.43 16 25 C 0.00 0.11 4.72 -17.43 -0.08 0.03 16 26 N -0.88 -23.65 11.41 55.49 0.63 -23.01 16 27 Si 0.89 20.45 29.66 -169.99 -5.04 15.41 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.24 6.11 -51.93 -0.32 0.92 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 41 H 0.07 1.10 5.38 -51.93 -0.28 0.82 16 42 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 1.40 2.09 -51.94 -0.11 1.29 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.08 1.44 6.98 -51.93 -0.36 1.08 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -27.95 362.02 -9.38 -37.33 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.39 Total: 4.90 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.07 Total: -0.84 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.05 Total: -46.74 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.29 Total: -15.52 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.95 -9.38 -37.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039559421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.056 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds