Wall clock time and date at job start Tue Mar 31 2020 14:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47262 * 2 1 4 4 C 1.52999 * 109.47365 * 119.99928 * 2 1 3 5 5 C 1.50704 * 109.47186 * 294.99893 * 4 2 1 6 6 O 1.21278 * 119.99662 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00099 * 179.97438 * 5 4 2 8 8 C 1.46664 * 125.33442 * 179.97438 * 7 5 4 9 9 C 1.53680 * 107.97246 * 180.71323 * 8 7 5 10 10 H 1.08996 * 112.77309 * 140.60429 * 9 8 7 11 11 C 1.53973 * 109.29762 * 266.93215 * 9 8 7 12 12 N 1.46765 * 106.67810 * 138.83402 * 11 9 8 13 13 C 1.36936 * 125.33553 * 161.58459 * 12 11 9 14 14 H 1.07998 * 120.00036 * 354.07164 * 13 12 11 15 15 C 1.38809 * 120.00040 * 174.06684 * 13 12 11 16 16 N 1.31620 * 119.99669 * 6.96752 * 15 13 12 17 17 Si 1.86798 * 120.00056 * 186.96740 * 15 13 12 18 18 H 1.48497 * 109.47221 * 94.98995 * 17 15 13 19 19 H 1.48501 * 109.47091 * 214.98692 * 17 15 13 20 20 H 1.48500 * 109.47201 * 334.98491 * 17 15 13 21 21 C 1.46660 * 109.32767 * 341.54865 * 12 11 9 22 22 C 1.53675 * 107.97220 * 0.71102 * 21 12 11 23 23 H 1.09000 * 112.77583 * 139.88806 * 22 21 12 24 24 C 1.46756 * 125.33658 * 359.69876 * 7 5 4 25 25 C 1.53001 * 109.47239 * 239.99812 * 2 1 3 26 26 H 1.09001 * 109.82620 * 185.70491 * 25 2 1 27 27 C 1.54375 * 109.82830 * 64.81287 * 25 2 1 28 28 C 1.55451 * 102.18780 * 219.18481 * 27 25 2 29 29 C 1.54947 * 100.99089 * 34.03979 * 28 27 25 30 30 O 1.43246 * 109.82889 * 306.58910 * 25 2 1 31 31 H 1.09007 * 109.46815 * 300.00063 * 1 2 3 32 32 H 1.09000 * 109.47421 * 59.99951 * 1 2 3 33 33 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.47304 * 54.99618 * 4 2 1 35 35 H 1.08995 * 109.47635 * 174.99589 * 4 2 1 36 36 H 1.08998 * 109.76593 * 300.34144 * 8 7 5 37 37 H 1.08994 * 109.76520 * 61.07189 * 8 7 5 38 38 H 1.08997 * 110.01987 * 258.14020 * 11 9 8 39 39 H 1.09000 * 110.01933 * 19.53254 * 11 9 8 40 40 H 0.97004 * 119.99264 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.76269 * 120.34075 * 21 12 11 42 42 H 1.09000 * 109.76465 * 241.06206 * 21 12 11 43 43 H 1.08996 * 110.02158 * 280.85078 * 24 7 5 44 44 H 1.09001 * 110.01527 * 42.24422 * 24 7 5 45 45 H 1.09002 * 110.85220 * 337.32342 * 27 25 2 46 46 H 1.09001 * 110.85091 * 100.94427 * 27 25 2 47 47 H 1.09005 * 111.05823 * 276.12661 * 28 27 25 48 48 H 1.09003 * 111.18566 * 152.01014 * 28 27 25 49 49 H 1.08997 * 110.31390 * 204.69714 * 29 28 27 50 50 H 1.09003 * 110.30633 * 82.51746 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9845 -0.3918 3.7001 8 6 1.6596 0.2696 4.9682 9 6 2.2559 -0.5713 6.1080 10 1 2.6825 0.0390 6.9040 11 6 1.1935 -1.5615 6.6194 12 7 1.8831 -2.8358 6.8530 13 6 1.4112 -3.8613 7.6281 14 1 0.5059 -3.7316 8.2026 15 6 2.0962 -5.0677 7.6752 16 7 3.2681 -5.1824 7.0872 17 14 1.3548 -6.5282 8.5733 18 1 0.6255 -7.3863 7.6053 19 1 2.4375 -7.3162 9.2153 20 1 0.4121 -6.0434 9.6132 21 6 3.1566 -2.8390 6.1256 22 6 3.2940 -1.4891 5.4041 23 1 4.3083 -1.0919 5.4416 24 6 2.7369 -1.6220 3.9727 25 6 2.0400 -0.7213 -1.2492 26 1 3.1252 -0.8138 -1.2055 27 6 1.6318 0.0669 -2.5123 28 6 1.2556 -1.0712 -3.5021 29 6 0.6542 -2.1193 -2.5322 30 8 1.4447 -2.0212 -1.3368 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 2.0916 1.2702 4.9834 37 1 0.5777 0.3334 5.0840 38 1 0.7599 -1.1958 7.5501 39 1 0.4131 -1.6917 5.8696 40 1 3.7469 -6.0254 7.1205 41 1 3.9812 -2.9678 6.8267 42 1 3.1627 -3.6493 5.3966 43 1 2.0762 -2.4862 3.9055 44 1 3.5573 -1.7228 3.2621 45 1 0.7716 0.7051 -2.3103 46 1 2.4695 0.6519 -2.8921 47 1 2.1408 -1.4626 -4.0036 48 1 0.5135 -0.7344 -4.2259 49 1 0.7351 -3.1193 -2.9582 50 1 -0.3877 -1.8818 -2.3173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049190667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:20 Heat of formation + Delta-G solvation = -60.885232 kcal Electronic energy + Delta-G solvation = -28410.646781 eV Core-core repulsion = 24631.038011 eV Total energy + Delta-G solvation = -3779.608770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.43044 -39.77807 -38.26151 -35.04896 -34.45835 -32.37544 -32.24467 -30.23391 -29.92079 -28.69973 -27.67978 -25.48857 -25.34834 -23.71138 -22.65169 -21.86713 -20.21267 -20.07508 -19.31641 -18.80086 -17.31181 -17.03890 -16.64102 -16.14441 -15.83732 -15.08337 -14.95150 -14.71803 -14.52658 -14.12480 -14.01999 -13.66572 -13.30475 -13.13736 -12.85751 -12.69950 -12.29193 -12.06933 -12.01608 -11.87891 -11.79716 -11.65774 -11.59704 -11.46770 -11.33214 -11.06563 -10.87858 -10.81686 -10.80400 -10.71489 -10.32675 -10.12679 -10.00955 -9.93329 -9.68168 -9.66984 -9.41349 -8.59968 -8.33402 -6.84593 -5.75684 -3.07730 2.84522 3.24178 3.39468 3.45210 3.46614 3.64562 4.22157 4.43254 4.48153 4.60275 4.68703 4.85778 4.88522 4.89864 4.97550 5.04066 5.21689 5.26662 5.34451 5.41470 5.46055 5.48393 5.50346 5.52728 5.59201 5.62390 5.65163 5.74113 5.76375 5.79457 5.89237 5.92656 5.94774 6.04483 6.15128 6.22876 6.25924 6.36863 6.44226 6.54115 6.63292 6.67948 6.85819 6.88235 7.49617 7.56074 7.76958 7.80441 8.24177 8.38654 9.20222 9.80607 10.45013 11.36445 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002893 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.397948 B = 9674.930804 C =10720.926019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.129 4.129 5 C 0.527 3.473 6 O -0.551 6.551 7 N -0.611 5.611 8 C 0.119 3.881 9 C -0.110 4.110 10 H 0.096 0.904 11 C 0.143 3.857 12 N -0.603 5.603 13 C -0.229 4.229 14 H 0.078 0.922 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.186 3.814 22 C -0.121 4.121 23 H 0.088 0.912 24 C 0.110 3.890 25 C 0.083 3.917 26 H 0.080 0.920 27 C -0.153 4.153 28 C -0.157 4.157 29 C 0.050 3.950 30 O -0.372 6.372 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.019 0.981 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 10.463 -18.445 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.169 4.169 5 C 0.316 3.684 6 O -0.430 6.430 7 N -0.344 5.344 8 C -0.003 4.003 9 C -0.129 4.129 10 H 0.114 0.886 11 C 0.017 3.983 12 N -0.329 5.329 13 C -0.357 4.357 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.207 1.207 21 C 0.061 3.939 22 C -0.141 4.141 23 H 0.106 0.894 24 C -0.013 4.013 25 C 0.026 3.974 26 H 0.098 0.902 27 C -0.191 4.191 28 C -0.194 4.194 29 C -0.027 4.027 30 O -0.291 6.291 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.780 10.644 -18.358 21.235 hybrid contribution -0.286 -0.760 0.357 0.887 sum -1.066 9.884 -18.001 20.564 Atomic orbital electron populations 1.21924 0.94364 1.01996 1.02511 1.21240 0.97460 0.99075 0.92336 0.89755 1.21653 1.02532 1.00786 0.91887 1.20351 0.79145 0.85365 0.83513 1.90624 1.40945 1.25191 1.86244 1.48395 1.55230 1.25271 1.05530 1.21708 1.00171 0.95744 0.82724 1.22867 0.97312 0.96438 0.96317 0.88628 1.21319 0.93160 0.86453 0.97378 1.44234 1.18834 1.13489 1.56364 1.19055 1.06936 0.90044 1.19702 0.90408 1.24805 0.96957 0.97805 1.00700 1.69962 1.13240 1.24972 1.48617 0.86113 0.78054 0.82807 0.78896 1.21598 1.21769 1.20655 1.20996 0.88952 0.89573 0.94371 1.23196 0.97979 0.99538 0.93401 0.89376 1.22270 0.95119 0.86756 0.97110 1.22827 0.97286 0.83011 0.94305 0.90243 1.23258 1.02709 0.98399 0.94717 1.23282 1.01651 0.96164 0.98343 1.23364 0.95094 0.99441 0.84763 1.88455 1.66087 1.31961 1.42614 0.90601 0.93327 0.92616 0.88232 0.89232 0.92121 0.91552 0.94688 0.96342 0.93713 0.93637 0.92976 0.90537 0.91406 0.89856 0.90148 0.90507 0.90130 0.89934 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.47 37.15 0.31 -1.50 16 2 C -0.08 -0.92 1.85 -90.62 -0.17 -1.09 16 3 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 4 C -0.13 -1.61 4.07 -27.88 -0.11 -1.72 16 5 C 0.53 8.18 7.55 -10.99 -0.08 8.10 16 6 O -0.55 -9.83 14.27 5.56 0.08 -9.75 16 7 N -0.61 -9.67 3.31 -172.22 -0.57 -10.24 16 8 C 0.12 1.88 6.19 -3.60 -0.02 1.85 16 9 C -0.11 -1.84 4.10 -88.48 -0.36 -2.20 16 10 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 11 C 0.14 2.92 6.42 -3.39 -0.02 2.90 16 12 N -0.60 -14.95 3.38 -171.89 -0.58 -15.53 16 13 C -0.23 -6.29 10.24 -15.06 -0.15 -6.44 16 14 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 15 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 16 N -0.92 -26.28 10.30 55.49 0.57 -25.71 16 17 Si 0.91 21.86 29.56 -169.99 -5.02 16.84 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.19 4.26 4.73 -3.60 -0.02 4.24 16 22 C -0.12 -2.11 4.12 -88.38 -0.36 -2.47 16 23 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 24 C 0.11 1.75 5.79 -3.29 -0.02 1.73 16 25 C 0.08 0.81 3.20 -26.01 -0.08 0.72 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 C -0.15 -1.15 6.37 -24.71 -0.16 -1.31 16 28 C -0.16 -1.05 7.16 -24.40 -0.17 -1.23 16 29 C 0.05 0.43 7.71 38.19 0.29 0.72 16 30 O -0.37 -4.21 9.82 -35.23 -0.35 -4.56 16 31 H 0.08 1.09 5.95 -51.92 -0.31 0.79 16 32 H 0.05 0.50 6.36 -51.93 -0.33 0.17 16 33 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 34 H 0.10 1.32 8.01 -51.92 -0.42 0.90 16 35 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.08 7.63 -51.93 -0.40 0.68 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 42 H 0.05 1.31 6.80 -51.93 -0.35 0.96 16 43 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 44 H 0.07 0.93 7.61 -51.93 -0.40 0.53 16 45 H 0.08 0.64 6.08 -51.93 -0.32 0.32 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -31.17 377.47 -10.09 -41.26 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.68 Total: -0.03 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.23 Total: 2.03 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.58 Total: -51.48 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.27 Total: -14.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.17 -10.09 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049190667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.623 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds