Wall clock time and date at job start Tue Mar 31 2020 13:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.56656 * 2 1 4 4 C 1.53078 * 117.49113 * 214.29118 * 2 1 3 5 5 C 1.53003 * 117.49843 * 145.69022 * 2 1 3 6 6 H 1.09004 * 117.49896 * 359.97438 * 5 2 1 7 7 C 1.50698 * 117.50185 * 214.97647 * 5 2 1 8 8 O 1.21282 * 119.99602 * 0.08768 * 7 5 2 9 9 N 1.34770 * 120.00119 * 180.08487 * 7 5 2 10 10 C 1.46931 * 120.62930 * 179.97438 * 9 7 5 11 11 C 1.53197 * 108.77670 * 233.58848 * 10 9 7 12 12 C 1.53042 * 109.31164 * 305.36643 * 11 10 9 13 13 C 1.53002 * 109.45854 * 181.38194 * 12 11 10 14 14 H 1.09002 * 110.55002 * 61.42833 * 13 12 11 15 15 O 1.44373 * 110.61846 * 298.54679 * 13 12 11 16 16 C 1.43744 * 106.97248 * 201.27793 * 15 13 12 17 17 C 1.54098 * 107.29564 * 26.51652 * 16 15 13 18 18 C 1.54813 * 104.30472 * 357.90152 * 17 16 15 19 19 H 1.08999 * 110.90868 * 97.38351 * 18 17 16 20 20 N 1.46500 * 110.90801 * 220.98806 * 18 17 16 21 21 C 1.36932 * 120.00231 * 273.54555 * 20 18 17 22 22 H 1.08005 * 119.99625 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00092 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00150 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99781 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47573 * 89.99836 * 25 23 21 27 27 H 1.48506 * 109.46736 * 209.99382 * 25 23 21 28 28 H 1.48493 * 109.47125 * 329.99433 * 25 23 21 29 29 C 1.53045 * 109.53886 * 61.36535 * 12 11 10 30 30 C 1.46922 * 120.63604 * 359.97438 * 9 7 5 31 31 H 1.09000 * 109.46966 * 274.31261 * 1 2 3 32 32 H 1.08997 * 109.46808 * 34.30929 * 1 2 3 33 33 H 1.08995 * 109.47167 * 154.31395 * 1 2 3 34 34 H 1.08995 * 117.51131 * 145.03959 * 4 2 1 35 35 H 1.08996 * 117.51059 * 359.97438 * 4 2 1 36 36 H 1.08997 * 109.58618 * 113.80093 * 10 9 7 37 37 H 1.08998 * 109.70486 * 353.44447 * 10 9 7 38 38 H 1.08995 * 109.49957 * 185.41198 * 11 10 9 39 39 H 1.09003 * 109.49698 * 65.31792 * 11 10 9 40 40 H 1.09002 * 109.45963 * 301.35744 * 12 11 10 41 41 H 1.08999 * 109.88023 * 267.08679 * 16 15 13 42 42 H 1.09008 * 110.00079 * 146.01138 * 16 15 13 43 43 H 1.09002 * 110.48969 * 116.64488 * 17 16 15 44 44 H 1.09002 * 110.48612 * 239.16155 * 17 16 15 45 45 H 0.97002 * 119.99800 * 93.54607 * 20 18 17 46 46 H 0.97005 * 119.99933 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.49656 * 58.58144 * 29 12 11 48 48 H 1.09000 * 109.49571 * 178.68514 * 29 12 11 49 49 H 1.08998 * 109.59011 * 246.20393 * 30 9 7 50 50 H 1.09006 * 109.58027 * 6.61970 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1219 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 1.6112 -1.8583 1.2686 7 6 3.5293 -0.7813 1.4608 8 8 3.9710 0.3467 1.4025 9 7 4.1946 -1.7308 2.1479 10 6 5.4565 -1.4149 2.8309 11 6 6.5291 -2.4061 2.3684 12 6 6.0307 -3.8348 2.5978 13 6 7.1133 -4.8273 2.1690 14 1 8.0158 -4.6900 2.7645 15 8 7.4056 -4.6844 0.7624 16 6 8.0098 -5.9157 0.3322 17 6 7.4990 -7.0282 1.2681 18 6 6.5999 -6.2874 2.2877 19 1 5.5503 -6.3548 2.0018 20 7 6.8056 -6.8084 3.6414 21 6 6.0943 -7.8965 4.0717 22 1 5.3813 -8.3703 3.4132 23 6 6.2888 -8.3898 5.3545 24 7 7.1573 -7.8120 6.1572 25 14 5.3189 -9.8746 5.9412 26 1 6.0688 -11.1149 5.6184 27 1 5.1181 -9.7858 7.4100 28 1 3.9987 -9.9034 5.2620 29 6 4.7642 -4.0738 1.7726 30 6 3.6719 -3.1016 2.2281 31 1 -0.3633 0.0773 1.0248 32 1 -0.3633 0.8488 -0.5792 33 1 -0.3633 -0.9261 -0.4454 34 1 3.1718 -0.8767 -1.2683 35 1 1.6115 -1.8598 -1.2677 36 1 5.3200 -1.5010 3.9089 37 1 5.7652 -0.3998 2.5816 38 1 7.4441 -2.2441 2.9381 39 1 6.7294 -2.2566 1.3074 40 1 5.8069 -3.9759 3.6553 41 1 9.0949 -5.8408 0.4031 42 1 7.7199 -6.1340 -0.6958 43 1 6.9175 -7.7607 0.7083 44 1 8.3332 -7.5122 1.7761 45 1 7.4457 -6.3826 4.2329 46 1 7.2935 -8.1570 7.0535 47 1 4.9810 -3.9085 0.7172 48 1 4.4230 -5.0987 1.9184 49 1 3.3895 -3.3254 3.2568 50 1 2.8018 -3.1994 1.5788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071077401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:25 Heat of formation + Delta-G solvation = -51.767592 kcal Electronic energy + Delta-G solvation = -28485.792220 eV Core-core repulsion = 24706.578820 eV Total energy + Delta-G solvation = -3779.213399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50580 -39.38867 -37.63205 -36.48554 -34.48262 -33.26189 -31.67406 -31.10662 -29.44429 -28.99169 -27.82665 -25.33831 -23.98872 -23.24501 -23.05997 -21.87501 -21.01892 -20.10059 -19.77021 -18.69582 -17.53530 -17.27241 -16.22168 -15.83301 -15.60364 -15.25315 -14.71315 -14.59193 -14.51665 -14.26781 -13.80495 -13.78658 -13.46816 -13.28689 -13.16501 -12.86697 -12.83553 -12.68092 -12.22311 -12.16035 -12.14014 -11.66664 -11.58150 -11.15825 -11.14499 -10.99855 -10.87626 -10.74758 -10.58050 -10.46336 -10.32837 -10.24134 -10.18238 -9.78588 -9.74703 -9.68136 -9.21571 -8.97228 -8.60959 -7.07383 -5.86684 -3.16704 2.43620 2.91717 3.36820 3.42383 3.44037 3.62131 4.23738 4.29407 4.51504 4.52983 4.56880 4.77376 4.85401 4.90707 5.01892 5.06508 5.17127 5.29083 5.34290 5.38756 5.41863 5.45049 5.47168 5.49163 5.52919 5.60245 5.64208 5.70305 5.70385 5.74567 5.78143 5.83964 5.95504 6.02065 6.07522 6.08659 6.09535 6.21344 6.26543 6.34088 6.42124 6.56678 6.62236 6.67291 6.87973 7.31857 7.39760 7.61555 8.15632 8.30950 9.42558 9.97354 10.32186 11.35470 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.003158 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.033991 B = 8863.738141 C = 9612.579524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.147 4.147 5 C -0.191 4.191 6 H 0.124 0.876 7 C 0.545 3.455 8 O -0.550 6.550 9 N -0.603 5.603 10 C 0.111 3.889 11 C -0.125 4.125 12 C -0.072 4.072 13 C 0.074 3.926 14 H 0.067 0.933 15 O -0.377 6.377 16 C 0.050 3.950 17 C -0.182 4.182 18 C 0.155 3.845 19 H 0.068 0.932 20 N -0.714 5.714 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.127 4.127 30 C 0.106 3.894 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 11.704 -12.181 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 H 0.134 0.866 4 C -0.184 4.184 5 C -0.212 4.212 6 H 0.142 0.858 7 C 0.333 3.667 8 O -0.429 6.429 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.163 4.163 12 C -0.090 4.090 13 C 0.016 3.984 14 H 0.085 0.915 15 O -0.296 6.296 16 C -0.027 4.027 17 C -0.223 4.223 18 C 0.043 3.957 19 H 0.085 0.915 20 N -0.355 5.355 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.165 4.165 30 C -0.017 4.017 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.214 12.342 -12.273 19.246 hybrid contribution 0.017 -1.315 0.788 1.534 sum -8.197 11.026 -11.485 17.907 Atomic orbital electron populations 1.21397 0.92284 1.02186 1.02167 1.22387 0.95138 0.95070 1.01697 0.86625 1.23099 1.03087 1.01420 0.90824 1.22330 0.97916 1.05062 0.95884 0.85798 1.19638 0.84660 0.84339 0.78020 1.90657 1.68955 1.21095 1.62179 1.48042 1.23647 1.10332 1.51509 1.21641 0.83056 1.00146 0.96250 1.21913 0.97653 0.94184 1.02564 1.21087 0.94016 0.93352 1.00564 1.23362 0.96920 0.95775 0.82330 0.91531 1.88789 1.81363 1.35281 1.24188 1.23037 0.96686 0.84697 0.98318 1.23691 1.01730 0.98236 0.98623 1.21864 0.97261 0.89638 0.86902 0.91450 1.42268 1.48895 1.34892 1.09441 1.19187 1.16564 1.04847 0.96699 0.91153 1.24744 0.99589 0.99587 0.96694 1.69656 1.37638 1.42475 1.08054 0.86207 0.79473 0.82709 0.77878 1.21708 1.21732 1.20695 1.21975 0.94477 0.99381 1.00695 1.21868 0.97166 0.80517 1.02116 0.91975 0.91752 0.92313 0.88309 0.87765 0.91429 0.89272 0.90833 0.90980 0.89228 0.93397 0.90982 0.91797 0.90536 0.78112 0.93389 0.90917 0.89741 0.91016 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.19 37.16 0.38 -0.48 16 2 C -0.12 -1.16 5.92 -90.58 -0.54 -1.69 16 3 H 0.12 1.26 7.67 -51.93 -0.40 0.86 16 4 C -0.15 -1.30 9.88 -26.69 -0.26 -1.57 16 5 C -0.19 -1.95 4.68 -91.77 -0.43 -2.38 16 6 H 0.12 1.06 6.82 -51.93 -0.35 0.71 16 7 C 0.54 7.38 7.48 -10.99 -0.08 7.30 16 8 O -0.55 -9.23 15.67 5.56 0.09 -9.14 16 9 N -0.60 -7.68 2.97 -172.79 -0.51 -8.19 16 10 C 0.11 1.43 6.43 -3.71 -0.02 1.41 16 11 C -0.13 -1.65 5.22 -26.61 -0.14 -1.79 16 12 C -0.07 -1.03 2.16 -90.57 -0.20 -1.23 16 13 C 0.07 1.21 2.70 -25.55 -0.07 1.14 16 14 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 15 O -0.38 -6.05 10.09 -35.23 -0.36 -6.41 16 16 C 0.05 0.74 7.70 37.73 0.29 1.03 16 17 C -0.18 -3.11 6.75 -25.20 -0.17 -3.28 16 18 C 0.15 2.87 3.10 -65.80 -0.20 2.67 16 19 H 0.07 1.26 5.68 -51.93 -0.29 0.96 16 20 N -0.71 -16.61 5.21 -51.36 -0.27 -16.88 16 21 C -0.24 -6.30 9.98 -15.06 -0.15 -6.46 16 22 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.88 13.06 55.49 0.72 -26.16 16 25 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C -0.13 -1.66 4.89 -26.62 -0.13 -1.79 16 30 C 0.11 1.20 6.29 -3.73 -0.02 1.17 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.22 7.01 -51.93 -0.36 0.85 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 40 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 45 H 0.38 9.61 7.73 -40.82 -0.32 9.30 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.07 0.99 7.75 -51.93 -0.40 0.59 16 48 H 0.08 1.16 5.98 -51.93 -0.31 0.85 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.79 5.68 -51.93 -0.29 0.49 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -30.30 388.46 -9.92 -40.21 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.58 Total: 10.54 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.84 Total: -6.30 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.06 Total: -51.23 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.27 Total: -15.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.30 -9.92 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071077401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.554 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds