Wall clock time and date at job start Tue Mar 31 2020 13:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.56656 * 2 1 4 4 C 1.53078 * 117.49113 * 214.29118 * 2 1 3 5 5 C 1.53003 * 117.49843 * 145.69022 * 2 1 3 6 6 H 1.09004 * 117.49896 * 359.97438 * 5 2 1 7 7 C 1.50698 * 117.50185 * 214.97647 * 5 2 1 8 8 O 1.21282 * 119.99602 * 0.08768 * 7 5 2 9 9 N 1.34770 * 120.00119 * 180.08487 * 7 5 2 10 10 C 1.46931 * 120.62930 * 179.97438 * 9 7 5 11 11 C 1.53197 * 108.77670 * 233.58848 * 10 9 7 12 12 C 1.53042 * 109.31164 * 305.36643 * 11 10 9 13 13 C 1.53002 * 109.45854 * 181.38194 * 12 11 10 14 14 H 1.09002 * 110.55002 * 61.42833 * 13 12 11 15 15 O 1.44373 * 110.61846 * 298.54679 * 13 12 11 16 16 C 1.43744 * 106.97248 * 201.27793 * 15 13 12 17 17 C 1.54098 * 107.29564 * 26.51652 * 16 15 13 18 18 C 1.54813 * 104.30472 * 357.90152 * 17 16 15 19 19 H 1.08999 * 110.90868 * 97.38351 * 18 17 16 20 20 N 1.46500 * 110.90801 * 220.98806 * 18 17 16 21 21 C 1.36932 * 120.00231 * 273.54555 * 20 18 17 22 22 H 1.08005 * 119.99625 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00092 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00150 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99781 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47573 * 89.99836 * 25 23 21 27 27 H 1.48506 * 109.46736 * 209.99382 * 25 23 21 28 28 H 1.48493 * 109.47125 * 329.99433 * 25 23 21 29 29 C 1.53045 * 109.53886 * 61.36535 * 12 11 10 30 30 C 1.46922 * 120.63604 * 359.97438 * 9 7 5 31 31 H 1.09000 * 109.46966 * 274.31261 * 1 2 3 32 32 H 1.08997 * 109.46808 * 34.30929 * 1 2 3 33 33 H 1.08995 * 109.47167 * 154.31395 * 1 2 3 34 34 H 1.08995 * 117.51131 * 145.03959 * 4 2 1 35 35 H 1.08996 * 117.51059 * 359.97438 * 4 2 1 36 36 H 1.08997 * 109.58618 * 113.80093 * 10 9 7 37 37 H 1.08998 * 109.70486 * 353.44447 * 10 9 7 38 38 H 1.08995 * 109.49957 * 185.41198 * 11 10 9 39 39 H 1.09003 * 109.49698 * 65.31792 * 11 10 9 40 40 H 1.09002 * 109.45963 * 301.35744 * 12 11 10 41 41 H 1.08999 * 109.88023 * 267.08679 * 16 15 13 42 42 H 1.09008 * 110.00079 * 146.01138 * 16 15 13 43 43 H 1.09002 * 110.48969 * 116.64488 * 17 16 15 44 44 H 1.09002 * 110.48612 * 239.16155 * 17 16 15 45 45 H 0.97002 * 119.99800 * 93.54607 * 20 18 17 46 46 H 0.97005 * 119.99933 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.49656 * 58.58144 * 29 12 11 48 48 H 1.09000 * 109.49571 * 178.68514 * 29 12 11 49 49 H 1.08998 * 109.59011 * 246.20393 * 30 9 7 50 50 H 1.09006 * 109.58027 * 6.61970 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1219 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 1.6112 -1.8583 1.2686 7 6 3.5293 -0.7813 1.4608 8 8 3.9710 0.3467 1.4025 9 7 4.1946 -1.7308 2.1479 10 6 5.4565 -1.4149 2.8309 11 6 6.5291 -2.4061 2.3684 12 6 6.0307 -3.8348 2.5978 13 6 7.1133 -4.8273 2.1690 14 1 8.0158 -4.6900 2.7645 15 8 7.4056 -4.6844 0.7624 16 6 8.0098 -5.9157 0.3322 17 6 7.4990 -7.0282 1.2681 18 6 6.5999 -6.2874 2.2877 19 1 5.5503 -6.3548 2.0018 20 7 6.8056 -6.8084 3.6414 21 6 6.0943 -7.8965 4.0717 22 1 5.3813 -8.3703 3.4132 23 6 6.2888 -8.3898 5.3545 24 7 7.1573 -7.8120 6.1572 25 14 5.3189 -9.8746 5.9412 26 1 6.0688 -11.1149 5.6184 27 1 5.1181 -9.7858 7.4100 28 1 3.9987 -9.9034 5.2620 29 6 4.7642 -4.0738 1.7726 30 6 3.6719 -3.1016 2.2281 31 1 -0.3633 0.0773 1.0248 32 1 -0.3633 0.8488 -0.5792 33 1 -0.3633 -0.9261 -0.4454 34 1 3.1718 -0.8767 -1.2683 35 1 1.6115 -1.8598 -1.2677 36 1 5.3200 -1.5010 3.9089 37 1 5.7652 -0.3998 2.5816 38 1 7.4441 -2.2441 2.9381 39 1 6.7294 -2.2566 1.3074 40 1 5.8069 -3.9759 3.6553 41 1 9.0949 -5.8408 0.4031 42 1 7.7199 -6.1340 -0.6958 43 1 6.9175 -7.7607 0.7083 44 1 8.3332 -7.5122 1.7761 45 1 7.4457 -6.3826 4.2329 46 1 7.2935 -8.1570 7.0535 47 1 4.9810 -3.9085 0.7172 48 1 4.4230 -5.0987 1.9184 49 1 3.3895 -3.3254 3.2568 50 1 2.8018 -3.1994 1.5788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071077401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:24 Heat of formation + Delta-G solvation = -69.143942 kcal Electronic energy + Delta-G solvation = -28486.545715 eV Core-core repulsion = 24706.578820 eV Total energy + Delta-G solvation = -3779.966894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56271 -40.64242 -38.61478 -37.46535 -36.24815 -34.43409 -33.42041 -32.19142 -30.94910 -29.75203 -29.10654 -26.58290 -25.39786 -24.58471 -24.19958 -23.00334 -21.87020 -21.41053 -20.93560 -19.69935 -19.23365 -18.46099 -17.46820 -17.11250 -16.96833 -16.31178 -16.15792 -15.92003 -15.51110 -15.43752 -15.20903 -14.84348 -14.72695 -14.39253 -14.21848 -14.10403 -13.89966 -13.68814 -13.61483 -13.32332 -13.03593 -12.87788 -12.82220 -12.68593 -12.41320 -12.30393 -12.20696 -12.15693 -11.93193 -11.87453 -11.65734 -11.48705 -11.31114 -11.01305 -10.93602 -10.90455 -10.76899 -10.49310 -9.67665 -9.00836 -7.93093 -5.22042 1.44817 1.50012 1.50427 1.58734 1.94795 2.56000 2.85744 2.95385 3.39923 3.43284 3.61059 3.72381 3.79638 3.84000 3.88591 3.99014 4.09512 4.15152 4.16195 4.18548 4.27801 4.32685 4.42061 4.43350 4.49492 4.59360 4.61668 4.73186 4.78715 4.80830 4.86267 4.88394 4.91061 4.96363 5.00129 5.02484 5.04615 5.10442 5.20508 5.22751 5.24694 5.40215 5.44014 5.49736 5.53683 5.56855 6.00029 6.28148 6.39095 7.12414 7.34863 8.07296 8.31253 9.29977 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.003158 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.033991 B = 8863.738141 C = 9612.579524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.135 4.135 5 C -0.199 4.199 6 H 0.147 0.853 7 C 0.537 3.463 8 O -0.591 6.591 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.114 4.114 12 C -0.069 4.069 13 C 0.084 3.916 14 H 0.053 0.947 15 O -0.378 6.378 16 C 0.053 3.947 17 C -0.177 4.177 18 C 0.148 3.852 19 H 0.073 0.927 20 N -0.724 5.724 21 C -0.234 4.234 22 H 0.078 0.922 23 C -0.071 4.071 24 N -0.968 5.968 25 Si 0.967 3.033 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.266 1.266 29 C -0.119 4.119 30 C 0.109 3.891 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 11.075 -13.940 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.145 4.145 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.219 4.219 6 H 0.164 0.836 7 C 0.328 3.672 8 O -0.473 6.473 9 N -0.335 5.335 10 C -0.010 4.010 11 C -0.152 4.152 12 C -0.087 4.087 13 C 0.026 3.974 14 H 0.070 0.930 15 O -0.297 6.297 16 C -0.024 4.024 17 C -0.218 4.218 18 C 0.039 3.961 19 H 0.091 0.909 20 N -0.364 5.364 21 C -0.366 4.366 22 H 0.096 0.904 23 C -0.264 4.264 24 N -0.619 5.619 25 Si 0.797 3.203 26 H -0.219 1.219 27 H -0.226 1.226 28 H -0.191 1.191 29 C -0.157 4.157 30 C -0.013 4.013 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.226 11.699 -14.088 20.974 hybrid contribution 0.697 -1.081 1.251 1.794 sum -9.529 10.619 -12.837 19.192 Atomic orbital electron populations 1.21397 0.90207 1.03381 1.02555 1.22421 0.96610 0.93967 1.01531 0.88954 1.23190 1.02817 1.01569 0.89698 1.22389 0.96573 1.06328 0.96647 0.83553 1.20276 0.85550 0.83765 0.77638 1.90635 1.70242 1.22772 1.63636 1.48143 1.23379 1.10883 1.51046 1.21580 0.83351 0.99424 0.96683 1.21785 0.97963 0.93503 1.01919 1.21033 0.94350 0.93445 0.99898 1.23192 0.96811 0.94861 0.82560 0.92956 1.88797 1.81465 1.35872 1.23583 1.23128 0.97124 0.83142 0.99002 1.23558 1.00737 0.99000 0.98510 1.22059 0.97945 0.91096 0.85030 0.90939 1.42382 1.48387 1.34468 1.11113 1.19544 1.15713 1.04793 0.96507 0.90429 1.25480 1.01153 1.02493 0.97254 1.69808 1.39749 1.44213 1.08101 0.85228 0.78783 0.79483 0.76801 1.21902 1.22594 1.19088 1.21880 0.94132 0.99558 1.00163 1.21952 0.97308 0.79082 1.02971 0.91912 0.91031 0.90735 0.89650 0.85014 0.90786 0.90268 0.90487 0.91925 0.90702 0.92611 0.88236 0.90772 0.92635 0.79514 0.94135 0.91117 0.90216 0.90682 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.19 71.98 0.73 -0.62 16 2 C -0.13 -2.16 5.92 -10.77 -0.06 -2.23 16 3 H 0.09 2.02 7.67 -2.39 -0.02 2.00 16 4 C -0.14 -2.09 9.88 30.62 0.30 -1.78 16 5 C -0.20 -3.65 4.68 -11.54 -0.05 -3.71 16 6 H 0.15 2.00 6.82 -2.38 -0.02 1.98 16 7 C 0.54 14.17 7.48 87.66 0.66 14.83 16 8 O -0.59 -20.13 15.67 -3.03 -0.05 -20.18 16 9 N -0.60 -14.75 2.97 -818.96 -2.43 -17.19 16 10 C 0.11 2.87 6.43 86.36 0.56 3.42 16 11 C -0.11 -2.97 5.22 30.67 0.16 -2.81 16 12 C -0.07 -1.94 2.16 -10.76 -0.02 -1.97 16 13 C 0.08 2.70 2.70 31.36 0.08 2.79 16 14 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 15 O -0.38 -11.50 10.09 -148.98 -1.50 -13.00 16 16 C 0.05 1.45 7.70 72.35 0.56 2.01 16 17 C -0.18 -5.83 6.75 31.58 0.21 -5.62 16 18 C 0.15 5.39 3.10 46.37 0.14 5.54 16 19 H 0.07 2.59 5.68 -2.39 -0.01 2.58 16 20 N -0.72 -33.81 5.21 -316.42 -1.65 -35.46 16 21 C -0.23 -12.09 9.98 84.03 0.84 -11.25 16 22 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.97 -56.96 13.06 21.65 0.28 -56.68 16 25 Si 0.97 44.12 29.55 68.60 2.03 46.15 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 C -0.12 -2.91 4.89 30.66 0.15 -2.76 16 30 C 0.11 2.23 6.29 86.35 0.54 2.78 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.63 7.90 -2.39 -0.02 0.61 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.13 1.31 8.05 -2.39 -0.02 1.30 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 2.21 7.01 -2.39 -0.02 2.19 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.77 7.82 -2.39 -0.02 1.75 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.05 2.06 8.05 -2.39 -0.02 2.04 16 45 H 0.37 19.06 7.73 -92.71 -0.72 18.35 16 46 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 47 H 0.07 1.78 7.75 -2.39 -0.02 1.76 16 48 H 0.08 2.04 5.98 -2.39 -0.01 2.03 16 49 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.11 1.71 5.68 -2.38 -0.01 1.69 16 Total: -1.00 -65.76 388.46 2.15 -63.61 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.21 Total: 37.56 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.26 Total: -4.81 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.80 Total: -109.32 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.55 Total: -33.18 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.76 2.15 -63.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071077401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.533 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds