Wall clock time and date at job start Tue Mar 31 2020 13:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.34777 * 120.00328 * 205.00007 * 6 4 2 8 8 O 1.21286 * 119.99925 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00516 * 179.97438 * 7 6 4 10 10 H 1.09004 * 115.54826 * 34.28375 * 9 7 6 11 11 C 1.52994 * 117.50244 * 248.61133 * 9 7 6 12 12 C 1.52999 * 60.00372 * 252.51054 * 11 9 7 13 13 H 1.08997 * 117.49981 * 107.48597 * 12 11 9 14 14 C 1.53001 * 117.49777 * 252.51276 * 12 11 9 15 15 C 1.53176 * 109.54166 * 248.43871 * 14 12 11 16 16 C 1.53105 * 109.15483 * 183.23866 * 15 14 12 17 17 O 1.42910 * 109.48498 * 57.47943 * 16 15 14 18 18 C 1.42894 * 114.09890 * 298.88563 * 17 16 15 19 19 C 1.53100 * 109.41485 * 61.15509 * 18 17 16 20 20 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 21 21 C 1.54906 * 101.58328 * 35.49714 * 20 4 2 22 22 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 23 23 C 1.36944 * 125.64743 * 298.32772 * 22 2 1 24 24 H 1.08002 * 119.99783 * 359.97438 * 23 22 2 25 25 C 1.38808 * 120.00111 * 179.97438 * 23 22 2 26 26 N 1.31620 * 119.99980 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00090 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46949 * 59.99738 * 27 25 23 29 29 H 1.48497 * 109.47224 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47032 * 299.99874 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 34 34 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 35 35 H 1.08997 * 117.49846 * 0.02562 * 11 9 7 36 36 H 1.09006 * 117.49861 * 144.99794 * 11 9 7 37 37 H 1.08996 * 109.54446 * 8.62265 * 14 12 11 38 38 H 1.08997 * 109.52190 * 303.05993 * 15 14 12 39 39 H 1.09001 * 109.51933 * 63.24858 * 15 14 12 40 40 H 1.08996 * 109.41307 * 297.49572 * 16 15 14 41 41 H 1.09008 * 109.48009 * 177.50029 * 16 15 14 42 42 H 1.09005 * 109.48039 * 301.17827 * 18 17 16 43 43 H 1.09000 * 109.48579 * 181.14052 * 18 17 16 44 44 H 1.09001 * 109.51976 * 182.48812 * 19 18 17 45 45 H 1.09001 * 109.51867 * 62.30390 * 19 18 17 46 46 H 1.09003 * 110.99799 * 277.42087 * 20 4 2 47 47 H 1.08999 * 111.03442 * 153.58709 * 20 4 2 48 48 H 1.09001 * 110.36496 * 204.15090 * 21 20 4 49 49 H 1.09002 * 110.36576 * 81.83622 * 21 20 4 50 50 H 0.97002 * 120.00225 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1932 -3.5790 8 8 2.1286 -1.3223 -3.8751 9 6 2.8696 0.7781 -4.6552 10 1 3.6501 1.4860 -4.3761 11 6 1.7860 1.2651 -5.6193 12 6 2.8520 0.2792 -6.1015 13 1 2.5428 -0.7515 -6.2746 14 6 3.9315 0.8121 -7.0458 15 6 3.7468 0.1948 -8.4355 16 6 4.8781 0.6706 -9.3509 17 8 6.1375 0.3130 -8.7777 18 6 6.3844 0.9009 -7.4989 19 6 5.3149 0.4328 -6.5085 20 6 3.2876 -1.5152 -0.6903 21 6 2.8145 -1.8783 0.7394 22 7 2.0301 -0.7124 1.1848 23 6 1.8050 -0.3522 2.4867 24 1 1.2148 0.5243 2.7102 25 6 2.3354 -1.1135 3.5192 26 7 3.0543 -2.1819 3.2468 27 14 2.0290 -0.6217 5.2950 28 1 0.5684 -0.6210 5.5634 29 1 2.6976 -1.5912 6.1995 30 1 2.5768 0.7378 5.5337 31 1 -0.3633 0.5206 0.8861 32 1 -0.3633 -1.0277 0.0079 33 1 -0.3634 0.5070 -0.8939 34 1 2.7188 1.0960 -2.0512 35 1 0.7754 0.8833 -5.4749 36 1 1.8536 2.2935 -5.9745 37 1 3.8522 1.8969 -7.1151 38 1 3.7753 -0.8920 -8.3580 39 1 2.7872 0.5066 -8.8479 40 1 4.8235 1.7535 -9.4615 41 1 4.7770 0.1995 -10.3287 42 1 6.3494 1.9870 -7.5852 43 1 7.3683 0.5960 -7.1424 44 1 5.4758 0.9147 -5.5441 45 1 5.3760 -0.6491 -6.3908 46 1 4.1654 -0.8697 -0.6593 47 1 3.4858 -2.4128 -1.2761 48 1 3.6717 -2.0318 1.3950 49 1 2.1887 -2.7705 0.7167 50 1 3.4246 -2.7141 3.9683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088740921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:12 Heat of formation + Delta-G solvation = -46.759033 kcal Electronic energy + Delta-G solvation = -27674.995700 eV Core-core repulsion = 23895.999488 eV Total energy + Delta-G solvation = -3778.996212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34808 -39.44042 -37.92364 -36.65889 -33.98907 -33.20949 -31.98241 -31.41854 -30.38273 -28.71956 -26.24451 -25.17691 -24.04680 -23.96125 -23.19962 -21.44932 -20.46728 -20.16564 -20.13491 -19.37962 -17.36975 -16.78787 -16.36219 -16.28925 -15.94706 -15.21290 -15.06372 -14.80244 -14.50444 -14.28343 -14.08938 -13.92984 -13.67330 -13.28186 -12.86657 -12.73111 -12.61438 -12.17946 -12.14630 -11.97884 -11.67582 -11.57272 -11.44289 -11.17977 -11.15797 -10.87538 -10.85807 -10.83093 -10.57472 -10.44505 -10.41076 -10.19572 -10.13672 -9.79944 -9.75910 -9.64420 -9.52334 -8.68742 -8.59542 -6.88991 -5.66660 -3.09739 2.60105 3.26095 3.38812 3.43354 3.44662 3.56240 3.65772 4.23506 4.40896 4.45900 4.50430 4.63618 4.71521 4.80547 4.88171 4.94427 5.03296 5.07627 5.17969 5.29437 5.33764 5.36069 5.41068 5.44151 5.52009 5.54613 5.57586 5.62150 5.72128 5.76213 5.82149 5.82837 5.95357 6.11560 6.15060 6.24730 6.30638 6.35228 6.52998 6.60647 6.70734 6.86410 6.87637 7.11074 7.50668 7.60621 7.75648 7.83993 8.33251 8.44048 9.19195 9.80133 10.44124 11.36597 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.002273 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.801615 B =12314.100610 C =12789.896823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.093 0.907 6 N -0.711 5.711 7 C 0.541 3.459 8 O -0.544 6.544 9 C -0.185 4.185 10 H 0.121 0.879 11 C -0.148 4.148 12 C -0.113 4.113 13 H 0.119 0.881 14 C -0.058 4.058 15 C -0.149 4.149 16 C 0.060 3.940 17 O -0.384 6.384 18 C 0.060 3.940 19 C -0.151 4.151 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.221 4.221 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.921 5.921 27 Si 0.915 3.085 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.398 0.602 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.109 0.891 49 H 0.014 0.986 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 9.396 -22.904 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.111 0.889 6 N -0.360 5.360 7 C 0.326 3.674 8 O -0.422 6.422 9 C -0.206 4.206 10 H 0.139 0.861 11 C -0.186 4.186 12 C -0.131 4.131 13 H 0.137 0.863 14 C -0.076 4.076 15 C -0.186 4.186 16 C -0.016 4.016 17 O -0.303 6.303 18 C -0.016 4.016 19 C -0.189 4.189 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.232 0.768 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.127 0.873 49 H 0.032 0.968 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.480 8.368 -22.945 24.549 hybrid contribution -0.361 0.875 1.393 1.684 sum 2.119 9.243 -21.552 23.546 Atomic orbital electron populations 1.22240 0.97943 1.01370 0.99900 1.20996 0.92579 0.94771 0.86961 0.94702 1.22154 0.97649 0.90860 0.86337 0.88927 1.45992 1.67919 1.16131 1.05997 1.19563 0.77263 0.87602 0.82930 1.90687 1.48515 1.20588 1.82421 1.22279 1.04117 1.02946 0.91283 0.86108 1.23070 0.94993 0.99632 1.00870 1.22381 0.98467 1.00209 0.92059 0.86335 1.20800 0.93472 0.99584 0.93772 1.22223 0.99239 1.02079 0.95094 1.22585 0.83337 0.99162 0.96555 1.87941 1.36401 1.72303 1.33669 1.22607 0.98892 0.96856 0.83266 1.22239 0.94282 1.03137 0.99210 1.23396 0.96771 0.99310 0.99780 1.21948 0.97360 0.88376 0.89533 1.44485 1.59258 1.28235 1.00057 1.18974 1.27276 1.08147 0.80537 0.90524 1.24793 1.00366 0.97374 0.98068 1.69786 1.39087 1.17778 1.30288 0.86156 0.77650 0.77419 0.84269 1.21228 1.21578 1.21183 0.92703 0.92975 0.94393 0.76776 0.88207 0.87974 0.90921 0.90648 0.90592 0.93331 0.88889 0.93315 0.88797 0.90663 0.90531 0.92030 0.92077 0.87330 0.96782 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.14 37.16 0.34 -2.56 16 2 C 0.16 3.11 3.48 -66.95 -0.23 2.88 16 3 H 0.04 0.68 7.72 -51.92 -0.40 0.28 16 4 C 0.13 2.46 2.84 -66.10 -0.19 2.28 16 5 H 0.09 1.85 7.26 -51.92 -0.38 1.47 16 6 N -0.71 -10.40 5.18 -52.03 -0.27 -10.67 16 7 C 0.54 7.92 7.61 -10.99 -0.08 7.84 16 8 O -0.54 -10.13 15.90 5.55 0.09 -10.04 16 9 C -0.19 -1.91 5.44 -91.77 -0.50 -2.40 16 10 H 0.12 1.01 7.66 -51.93 -0.40 0.61 16 11 C -0.15 -1.28 9.88 -26.73 -0.26 -1.55 16 12 C -0.11 -1.07 4.67 -90.62 -0.42 -1.49 16 13 H 0.12 1.39 7.64 -51.93 -0.40 0.99 16 14 C -0.06 -0.44 2.42 -90.44 -0.22 -0.66 16 15 C -0.15 -1.07 5.41 -26.59 -0.14 -1.21 16 16 C 0.06 0.43 6.84 37.21 0.25 0.68 16 17 O -0.38 -3.67 10.77 -35.23 -0.38 -4.04 16 18 C 0.06 0.47 6.84 37.21 0.25 0.72 16 19 C -0.15 -1.24 5.22 -26.59 -0.14 -1.38 16 20 C -0.15 -3.05 6.77 -24.59 -0.17 -3.22 16 21 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 22 N -0.60 -14.81 3.13 -162.57 -0.51 -15.32 16 23 C -0.22 -5.99 9.87 -15.06 -0.15 -6.14 16 24 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 25 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 26 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 27 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 4.84 8.37 -40.82 -0.34 4.50 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.07 0.49 7.90 -51.93 -0.41 0.07 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.58 7.43 -51.93 -0.39 0.19 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -31.72 391.68 -10.29 -42.01 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.89 Total: 4.31 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.77 Total: -2.88 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.22 Total: -52.05 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.29 Total: -14.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.72 -10.29 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088740921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.748 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds