Wall clock time and date at job start Tue Mar 31 2020 13:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.34777 * 120.00328 * 205.00007 * 6 4 2 8 8 O 1.21286 * 119.99925 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00516 * 179.97438 * 7 6 4 10 10 H 1.09004 * 115.54826 * 34.28375 * 9 7 6 11 11 C 1.52994 * 117.50244 * 248.61133 * 9 7 6 12 12 C 1.52999 * 60.00372 * 252.51054 * 11 9 7 13 13 H 1.08997 * 117.49981 * 107.48597 * 12 11 9 14 14 C 1.53001 * 117.49777 * 252.51276 * 12 11 9 15 15 C 1.53176 * 109.54166 * 248.43871 * 14 12 11 16 16 C 1.53105 * 109.15483 * 183.23866 * 15 14 12 17 17 O 1.42910 * 109.48498 * 57.47943 * 16 15 14 18 18 C 1.42894 * 114.09890 * 298.88563 * 17 16 15 19 19 C 1.53100 * 109.41485 * 61.15509 * 18 17 16 20 20 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 21 21 C 1.54906 * 101.58328 * 35.49714 * 20 4 2 22 22 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 23 23 C 1.36944 * 125.64743 * 298.32772 * 22 2 1 24 24 H 1.08002 * 119.99783 * 359.97438 * 23 22 2 25 25 C 1.38808 * 120.00111 * 179.97438 * 23 22 2 26 26 N 1.31620 * 119.99980 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00090 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46949 * 59.99738 * 27 25 23 29 29 H 1.48497 * 109.47224 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47032 * 299.99874 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 34 34 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 35 35 H 1.08997 * 117.49846 * 0.02562 * 11 9 7 36 36 H 1.09006 * 117.49861 * 144.99794 * 11 9 7 37 37 H 1.08996 * 109.54446 * 8.62265 * 14 12 11 38 38 H 1.08997 * 109.52190 * 303.05993 * 15 14 12 39 39 H 1.09001 * 109.51933 * 63.24858 * 15 14 12 40 40 H 1.08996 * 109.41307 * 297.49572 * 16 15 14 41 41 H 1.09008 * 109.48009 * 177.50029 * 16 15 14 42 42 H 1.09005 * 109.48039 * 301.17827 * 18 17 16 43 43 H 1.09000 * 109.48579 * 181.14052 * 18 17 16 44 44 H 1.09001 * 109.51976 * 182.48812 * 19 18 17 45 45 H 1.09001 * 109.51867 * 62.30390 * 19 18 17 46 46 H 1.09003 * 110.99799 * 277.42087 * 20 4 2 47 47 H 1.08999 * 111.03442 * 153.58709 * 20 4 2 48 48 H 1.09001 * 110.36496 * 204.15090 * 21 20 4 49 49 H 1.09002 * 110.36576 * 81.83622 * 21 20 4 50 50 H 0.97002 * 120.00225 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1932 -3.5790 8 8 2.1286 -1.3223 -3.8751 9 6 2.8696 0.7781 -4.6552 10 1 3.6501 1.4860 -4.3761 11 6 1.7860 1.2651 -5.6193 12 6 2.8520 0.2792 -6.1015 13 1 2.5428 -0.7515 -6.2746 14 6 3.9315 0.8121 -7.0458 15 6 3.7468 0.1948 -8.4355 16 6 4.8781 0.6706 -9.3509 17 8 6.1375 0.3130 -8.7777 18 6 6.3844 0.9009 -7.4989 19 6 5.3149 0.4328 -6.5085 20 6 3.2876 -1.5152 -0.6903 21 6 2.8145 -1.8783 0.7394 22 7 2.0301 -0.7124 1.1848 23 6 1.8050 -0.3522 2.4867 24 1 1.2148 0.5243 2.7102 25 6 2.3354 -1.1135 3.5192 26 7 3.0543 -2.1819 3.2468 27 14 2.0290 -0.6217 5.2950 28 1 0.5684 -0.6210 5.5634 29 1 2.6976 -1.5912 6.1995 30 1 2.5768 0.7378 5.5337 31 1 -0.3633 0.5206 0.8861 32 1 -0.3633 -1.0277 0.0079 33 1 -0.3634 0.5070 -0.8939 34 1 2.7188 1.0960 -2.0512 35 1 0.7754 0.8833 -5.4749 36 1 1.8536 2.2935 -5.9745 37 1 3.8522 1.8969 -7.1151 38 1 3.7753 -0.8920 -8.3580 39 1 2.7872 0.5066 -8.8479 40 1 4.8235 1.7535 -9.4615 41 1 4.7770 0.1995 -10.3287 42 1 6.3494 1.9870 -7.5852 43 1 7.3683 0.5960 -7.1424 44 1 5.4758 0.9147 -5.5441 45 1 5.3760 -0.6491 -6.3908 46 1 4.1654 -0.8697 -0.6593 47 1 3.4858 -2.4128 -1.2761 48 1 3.6717 -2.0318 1.3950 49 1 2.1887 -2.7705 0.7167 50 1 3.4246 -2.7141 3.9683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088740921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:11 Heat of formation + Delta-G solvation = -66.333388 kcal Electronic energy + Delta-G solvation = -27675.844507 eV Core-core repulsion = 23895.999488 eV Total energy + Delta-G solvation = -3779.845020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34688 -40.34049 -39.34560 -37.65165 -35.58389 -33.99040 -33.68607 -32.08272 -31.97740 -30.54234 -27.32463 -26.29828 -25.86783 -24.76289 -24.17597 -22.22311 -21.98436 -21.57335 -21.02170 -20.64328 -18.74998 -18.34119 -17.44151 -17.05788 -16.87791 -16.65526 -16.05955 -15.85630 -15.71124 -15.58615 -15.31044 -15.15010 -14.68785 -14.39454 -14.24146 -14.02079 -13.74987 -13.56645 -13.26101 -13.24513 -12.96060 -12.82835 -12.72595 -12.61307 -12.27806 -12.25084 -12.12739 -12.04679 -12.02638 -11.79485 -11.59374 -11.56712 -11.46743 -11.07653 -10.95444 -10.75997 -10.71751 -10.39488 -10.01377 -8.91273 -7.75344 -5.20758 1.47796 1.50692 1.51306 1.57031 2.09618 2.51963 2.84223 3.03509 3.34870 3.48066 3.60622 3.72531 3.77609 3.85285 3.94058 3.97907 4.06457 4.16284 4.19679 4.20432 4.31116 4.38942 4.47510 4.48936 4.60563 4.63321 4.66616 4.73595 4.78204 4.84579 4.85929 4.88282 4.92937 4.98612 5.02858 5.04628 5.11814 5.19915 5.22165 5.28079 5.34674 5.48572 5.50769 5.57895 5.62459 5.78471 6.29318 6.33090 6.59879 7.10111 7.28264 7.78004 8.41770 9.26502 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.002273 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.801615 B =12314.100610 C =12789.896823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.054 0.946 4 C 0.152 3.848 5 H 0.076 0.924 6 N -0.700 5.700 7 C 0.538 3.462 8 O -0.590 6.590 9 C -0.188 4.188 10 H 0.150 0.850 11 C -0.128 4.128 12 C -0.115 4.115 13 H 0.088 0.912 14 C -0.051 4.051 15 C -0.147 4.147 16 C 0.057 3.943 17 O -0.411 6.411 18 C 0.059 3.941 19 C -0.151 4.151 20 C -0.138 4.138 21 C 0.158 3.842 22 N -0.614 5.614 23 C -0.228 4.228 24 H 0.086 0.914 25 C -0.070 4.070 26 N -0.952 5.952 27 Si 0.980 3.020 28 H -0.280 1.280 29 H -0.298 1.298 30 H -0.274 1.274 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.415 0.585 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.078 0.922 49 H -0.017 1.017 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 12.870 -24.371 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.072 0.928 4 C 0.046 3.954 5 H 0.094 0.906 6 N -0.351 5.351 7 C 0.326 3.674 8 O -0.470 6.470 9 C -0.209 4.209 10 H 0.168 0.832 11 C -0.165 4.165 12 C -0.134 4.134 13 H 0.107 0.893 14 C -0.069 4.069 15 C -0.185 4.185 16 C -0.019 4.019 17 O -0.330 6.330 18 C -0.018 4.018 19 C -0.188 4.188 20 C -0.178 4.178 21 C 0.032 3.968 22 N -0.339 5.339 23 C -0.356 4.356 24 H 0.104 0.896 25 C -0.262 4.262 26 N -0.602 5.602 27 Si 0.808 3.192 28 H -0.206 1.206 29 H -0.224 1.224 30 H -0.200 1.200 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.252 0.748 35 H 0.107 0.893 36 H 0.155 0.845 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.001 0.999 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.188 11.901 -24.443 27.275 hybrid contribution -0.306 -0.242 1.783 1.825 sum 1.883 11.659 -22.660 25.553 Atomic orbital electron populations 1.22126 0.96655 1.00583 1.01213 1.21200 0.93466 0.95127 0.85757 0.92835 1.21687 0.96083 0.90962 0.86688 0.90633 1.45799 1.67763 1.16191 1.05336 1.20347 0.75936 0.87718 0.83389 1.90678 1.50411 1.22889 1.83041 1.22275 1.05970 1.02724 0.89958 0.83228 1.23196 0.93766 1.00936 0.98624 1.22323 0.99783 0.99306 0.91958 0.89341 1.20794 0.92156 1.00774 0.93170 1.22207 1.00198 1.00830 0.95247 1.22732 0.82239 1.00315 0.96627 1.87909 1.37615 1.73049 1.34428 1.22693 0.98753 0.97813 0.82497 1.22225 0.95124 1.01526 0.99954 1.23192 0.97813 0.99865 0.96936 1.21660 0.95710 0.87774 0.91647 1.44725 1.59729 1.28536 1.00905 1.19365 1.26482 1.08087 0.81711 0.89613 1.25638 1.00840 0.97716 1.02048 1.70041 1.40395 1.18934 1.30814 0.85129 0.77505 0.77165 0.79389 1.20620 1.22397 1.19976 0.93273 0.94805 0.91123 0.74831 0.89326 0.84549 0.88490 0.92744 0.89104 0.91544 0.88152 0.91430 0.88662 0.89834 0.93211 0.91008 0.92001 0.90405 0.99934 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.14 71.98 0.66 -4.61 16 2 C 0.15 5.89 3.48 45.34 0.16 6.05 16 3 H 0.05 1.93 7.72 -2.38 -0.02 1.91 16 4 C 0.15 5.46 2.84 46.18 0.13 5.59 16 5 H 0.08 3.03 7.26 -2.38 -0.02 3.01 16 6 N -0.70 -19.05 5.18 -436.92 -2.26 -21.31 16 7 C 0.54 14.98 7.61 87.66 0.67 15.65 16 8 O -0.59 -22.03 15.90 -3.05 -0.05 -22.08 16 9 C -0.19 -3.34 5.44 -11.54 -0.06 -3.40 16 10 H 0.15 1.83 7.66 -2.39 -0.02 1.81 16 11 C -0.13 -1.77 9.88 30.59 0.30 -1.46 16 12 C -0.11 -1.97 4.67 -10.79 -0.05 -2.02 16 13 H 0.09 2.09 7.64 -2.39 -0.02 2.07 16 14 C -0.05 -0.64 2.42 -10.68 -0.03 -0.67 16 15 C -0.15 -1.87 5.41 30.69 0.17 -1.70 16 16 C 0.06 0.69 6.84 72.02 0.49 1.18 16 17 O -0.41 -7.28 10.77 -148.98 -1.60 -8.89 16 18 C 0.06 0.80 6.84 72.02 0.49 1.29 16 19 C -0.15 -2.23 5.22 30.69 0.16 -2.07 16 20 C -0.14 -5.57 6.77 31.98 0.22 -5.36 16 21 C 0.16 8.00 5.89 86.86 0.51 8.51 16 22 N -0.61 -30.78 3.13 -668.27 -2.09 -32.87 16 23 C -0.23 -12.36 9.87 84.03 0.83 -11.53 16 24 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 25 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 26 N -0.95 -56.90 10.09 21.65 0.22 -56.68 16 27 Si 0.98 45.21 29.55 68.60 2.03 47.23 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 30 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 31 H 0.05 1.81 8.03 -2.39 -0.02 1.79 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.41 8.70 8.37 -92.71 -0.78 7.92 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.14 1.01 8.05 -2.38 -0.02 0.99 16 37 H 0.10 0.83 7.90 -2.39 -0.02 0.81 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.07 7.43 -2.39 -0.02 1.06 16 45 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.08 4.45 5.88 -2.39 -0.01 4.44 16 49 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 50 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -71.68 391.68 1.49 -70.19 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.14 Total: 22.45 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.11 Total: 1.97 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.13 Total: -110.86 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.65 Total: -30.97 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.68 1.49 -70.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088740921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.852 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds