Wall clock time and date at job start Tue Mar 31 2020 13:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47478 * 2 1 4 4 C 1.52995 * 109.47439 * 119.99883 * 2 1 3 5 5 C 1.53003 * 109.47020 * 59.99973 * 4 2 1 6 6 N 1.46506 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99659 * 155.00055 * 6 5 4 8 8 O 1.21348 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.49451 * 119.99730 * 179.97438 * 7 6 5 10 10 O 1.21349 * 120.00115 * 5.09245 * 9 7 6 11 11 N 1.34780 * 119.99707 * 185.09194 * 9 7 6 12 12 C 1.46496 * 119.99658 * 184.79743 * 11 9 7 13 13 C 1.52999 * 109.47003 * 185.22374 * 12 11 9 14 14 C 1.50701 * 115.54846 * 65.18134 * 13 12 11 15 15 H 1.08003 * 119.99826 * 273.48136 * 14 13 12 16 16 C 1.37878 * 120.00287 * 93.48855 * 14 13 12 17 17 N 1.31519 * 119.99763 * 354.31523 * 16 14 13 18 18 Si 1.86794 * 120.00418 * 174.31842 * 16 14 13 19 19 H 1.48500 * 109.46967 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47144 * 119.99708 * 18 16 14 21 21 H 1.48500 * 109.47415 * 239.99912 * 18 16 14 22 22 C 1.52998 * 117.49943 * 279.50896 * 13 12 11 23 23 C 1.53004 * 117.50081 * 210.84928 * 13 12 11 24 24 C 1.52996 * 109.47161 * 60.00428 * 5 4 2 25 25 C 1.53005 * 109.46563 * 299.99983 * 24 5 4 26 26 H 1.08996 * 109.47441 * 299.99913 * 25 24 5 27 27 C 1.53005 * 109.46977 * 180.02562 * 25 24 5 28 28 C 1.52997 * 109.47319 * 60.00453 * 25 24 5 29 29 H 1.09003 * 109.46656 * 300.00166 * 1 2 3 30 30 H 1.08998 * 109.47366 * 59.99804 * 1 2 3 31 31 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47461 * 299.99993 * 4 2 1 33 33 H 1.08996 * 109.47548 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47291 * 299.99977 * 5 4 2 35 35 H 0.96999 * 120.00155 * 334.99381 * 6 5 4 36 36 H 0.96993 * 119.99940 * 4.79906 * 11 9 7 37 37 H 1.08995 * 109.47025 * 65.22604 * 12 11 9 38 38 H 1.09001 * 109.47463 * 305.22263 * 12 11 9 39 39 H 0.96998 * 120.00133 * 185.00155 * 17 16 14 40 40 H 1.09004 * 117.49878 * 0.02562 * 22 13 12 41 41 H 1.09007 * 117.49463 * 145.01791 * 22 13 12 42 42 H 1.08996 * 117.49711 * 214.98098 * 23 13 12 43 43 H 1.09000 * 117.49583 * 359.97438 * 23 13 12 44 44 H 1.09000 * 109.47386 * 59.99607 * 24 5 4 45 45 H 1.09000 * 109.47454 * 180.02562 * 24 5 4 46 46 H 1.09001 * 109.47258 * 300.00497 * 27 25 24 47 47 H 1.09001 * 109.46792 * 59.99863 * 27 25 24 48 48 H 1.08995 * 109.47494 * 179.97438 * 27 25 24 49 49 H 1.08998 * 109.47263 * 180.02562 * 28 25 24 50 50 H 1.08996 * 109.47305 * 59.99377 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 7 2.0180 -2.8541 2.4457 7 6 1.3409 -3.9109 2.9371 8 8 0.3276 -4.2907 2.3882 9 6 1.8390 -4.6155 4.1574 10 8 2.7992 -4.1816 4.7592 11 7 1.2215 -5.7330 4.5894 12 6 1.6424 -6.3645 5.8424 13 6 0.8774 -7.6754 6.0349 14 6 1.1660 -8.7514 5.0200 15 1 0.6159 -8.7788 4.0909 16 6 2.1320 -9.7008 5.2774 17 7 2.8785 -9.6037 6.3559 18 14 2.3807 -11.1250 4.0946 19 1 1.4211 -11.0057 2.9676 20 1 3.7691 -11.0948 3.5684 21 1 2.1493 -12.4069 4.8075 22 6 -0.5472 -7.5877 6.5859 23 6 0.5842 -8.1182 7.4699 24 6 2.0401 -2.8850 0.0001 25 6 1.5300 -2.1637 -1.2492 26 1 0.4400 -2.1637 -1.2492 27 6 2.0395 -2.8853 -2.4985 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -0.2073 2.1393 33 1 3.1300 -0.7208 1.2494 34 1 0.4400 -2.1638 1.2493 35 1 2.8283 -2.5508 2.8842 36 1 0.4986 -6.1190 4.0706 37 1 1.4309 -5.6946 6.6758 38 1 2.7122 -6.5703 5.8042 39 1 3.6055 -10.2294 6.5005 40 1 -0.9397 -6.5959 6.8108 41 1 -1.2757 -8.3084 6.2144 42 1 0.5997 -9.1877 7.6796 43 1 0.9368 -7.4757 8.2767 44 1 3.1301 -2.8849 0.0000 45 1 1.6764 -3.9125 -0.0002 46 1 3.1295 -2.8858 -2.4987 47 1 1.6758 -3.9128 -2.4982 48 1 1.6758 -2.3718 -3.3885 49 1 1.6763 -0.2072 -2.1390 50 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117379728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:12 Heat of formation + Delta-G solvation = -78.122011 kcal Electronic energy + Delta-G solvation = -27798.203702 eV Core-core repulsion = 24017.847489 eV Total energy + Delta-G solvation = -3780.356213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61185 -39.43233 -37.96768 -36.72066 -34.85881 -33.45900 -33.27425 -31.93771 -30.14986 -27.14852 -27.01651 -26.72697 -25.46173 -23.86186 -21.91877 -21.30664 -21.09213 -20.05512 -19.56994 -18.90930 -17.91095 -16.70884 -16.08853 -15.84410 -15.62278 -15.15363 -15.02913 -14.73868 -14.46837 -14.26901 -14.09302 -13.94450 -13.66321 -13.51469 -13.03228 -12.85054 -12.73028 -12.45637 -12.15329 -11.90986 -11.83854 -11.62831 -11.57921 -11.39783 -11.30496 -11.14702 -11.00745 -10.91495 -10.72987 -10.63976 -10.52662 -10.25055 -10.19195 -9.64567 -9.22104 -9.15083 -9.04937 -8.47853 -8.43244 -8.16570 -6.08979 -4.17706 1.80387 2.69067 3.25253 3.34252 3.38053 3.61769 4.00594 4.31007 4.35687 4.40591 4.57023 4.76070 4.78368 4.92386 4.99131 5.05086 5.14183 5.16620 5.24134 5.36567 5.37386 5.39555 5.42788 5.52642 5.60455 5.66884 5.72264 5.81668 5.85857 5.92453 5.96521 5.97265 6.05720 6.13164 6.25356 6.30115 6.36423 6.38615 6.46562 6.66728 6.74954 7.00235 7.09462 7.26625 7.36867 7.51484 7.81165 7.87570 8.15865 8.32019 8.53520 8.84245 9.49351 10.98328 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.002800 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.631469 B = 9996.937865 C =10910.695367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.123 4.123 5 C 0.142 3.858 6 N -0.704 5.704 7 C 0.510 3.490 8 O -0.521 6.521 9 C 0.495 3.505 10 O -0.539 6.539 11 N -0.667 5.667 12 C 0.159 3.841 13 C 0.020 3.980 14 C -0.499 4.499 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.876 5.876 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.212 4.212 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.091 4.091 26 H 0.075 0.925 27 C -0.147 4.147 28 C -0.111 4.111 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.411 0.589 36 H 0.412 0.588 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 18.447 -12.927 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.161 4.161 5 C 0.038 3.962 6 N -0.357 5.357 7 C 0.291 3.709 8 O -0.396 6.396 9 C 0.274 3.726 10 O -0.418 6.418 11 N -0.316 5.316 12 C 0.036 3.964 13 C 0.019 3.981 14 C -0.536 4.536 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.512 5.512 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.250 4.250 23 C -0.174 4.174 24 C -0.165 4.165 25 C -0.110 4.110 26 H 0.094 0.906 27 C -0.204 4.204 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.247 0.753 36 H 0.248 0.752 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.809 18.317 -12.717 22.372 hybrid contribution 0.394 -0.910 -0.554 1.136 sum -1.415 17.407 -13.271 21.934 Atomic orbital electron populations 1.21992 0.95091 1.02503 1.01695 1.21041 0.96141 0.99094 0.94222 0.90764 1.21854 1.01318 0.94239 0.98698 1.21112 1.00379 0.90918 0.83764 1.45854 1.29383 1.31295 1.29160 1.20493 0.84101 0.81147 0.85151 1.90737 1.24272 1.64602 1.59964 1.19964 0.84274 0.82926 0.85436 1.90714 1.26428 1.66542 1.58144 1.45858 1.36369 1.24172 1.25216 1.21241 1.00656 0.92603 0.81859 1.19039 0.91336 0.92829 0.94898 1.20403 1.21250 1.09456 1.02528 0.92024 1.24992 0.95718 0.97435 0.94960 1.69998 1.18113 1.37201 1.25876 0.86562 0.78059 0.82467 0.81114 1.19620 1.21004 1.20919 1.23102 0.93538 1.00026 1.08301 1.22432 1.01026 1.00457 0.93506 1.22016 1.01136 1.00064 0.93290 1.21130 1.00864 0.94519 0.94440 0.90631 1.21818 1.01156 1.00473 0.96996 1.21671 1.00677 0.95159 0.97350 0.92645 0.92627 0.91797 0.91072 0.91122 0.88851 0.75348 0.75193 0.93911 0.90434 0.92903 0.91662 0.90185 0.89313 0.91726 0.91576 0.91070 0.92733 0.92502 0.92735 0.91820 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.50 37.16 0.32 -0.78 16 2 C -0.09 -0.58 3.19 -90.62 -0.29 -0.87 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.97 4.92 -26.73 -0.13 -1.10 16 5 C 0.14 1.49 2.18 -67.93 -0.15 1.34 16 6 N -0.70 -8.93 5.07 -54.23 -0.27 -9.21 16 7 C 0.51 8.33 7.85 -11.58 -0.09 8.24 16 8 O -0.52 -9.40 16.16 5.50 0.09 -9.31 16 9 C 0.49 9.34 7.88 -11.58 -0.09 9.25 16 10 O -0.54 -11.08 16.46 5.50 0.09 -10.99 16 11 N -0.67 -13.36 5.44 -60.73 -0.33 -13.69 16 12 C 0.16 3.53 5.53 -4.04 -0.02 3.51 16 13 C 0.02 0.46 1.52 -155.66 -0.24 0.23 16 14 C -0.50 -13.01 8.77 -34.44 -0.30 -13.31 16 15 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 16 C 0.07 1.94 5.36 -17.82 -0.10 1.85 16 17 N -0.88 -24.16 12.40 55.43 0.69 -23.47 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 23 C -0.14 -3.10 8.95 -26.69 -0.24 -3.34 16 24 C -0.13 -1.29 4.78 -26.73 -0.13 -1.42 16 25 C -0.09 -0.74 2.44 -90.62 -0.22 -0.97 16 26 H 0.08 0.65 6.43 -51.93 -0.33 0.32 16 27 C -0.15 -1.15 9.19 37.16 0.34 -0.80 16 28 C -0.11 -0.76 4.73 -26.73 -0.13 -0.88 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.10 5.86 -51.93 -0.30 0.79 16 35 H 0.41 4.78 8.08 -40.82 -0.33 4.45 16 36 H 0.41 8.12 7.96 -40.82 -0.32 7.80 16 37 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.08 1.94 8.10 -51.93 -0.42 1.52 16 39 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 42 H 0.09 2.18 7.99 -51.93 -0.42 1.77 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -28.86 397.75 -9.18 -38.04 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -8.69 Total: 10.64 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.73 Total: -3.78 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.08 Total: -46.37 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.86 -9.18 -38.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117379728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.081 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds