Wall clock time and date at job start Tue Mar 31 2020 13:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47478 * 2 1 4 4 C 1.52995 * 109.47439 * 119.99883 * 2 1 3 5 5 C 1.53003 * 109.47020 * 59.99973 * 4 2 1 6 6 N 1.46506 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99659 * 155.00055 * 6 5 4 8 8 O 1.21348 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.49451 * 119.99730 * 179.97438 * 7 6 5 10 10 O 1.21349 * 120.00115 * 5.09245 * 9 7 6 11 11 N 1.34780 * 119.99707 * 185.09194 * 9 7 6 12 12 C 1.46496 * 119.99658 * 184.79743 * 11 9 7 13 13 C 1.52999 * 109.47003 * 185.22374 * 12 11 9 14 14 C 1.50701 * 115.54846 * 65.18134 * 13 12 11 15 15 H 1.08003 * 119.99826 * 273.48136 * 14 13 12 16 16 C 1.37878 * 120.00287 * 93.48855 * 14 13 12 17 17 N 1.31519 * 119.99763 * 354.31523 * 16 14 13 18 18 Si 1.86794 * 120.00418 * 174.31842 * 16 14 13 19 19 H 1.48500 * 109.46967 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47144 * 119.99708 * 18 16 14 21 21 H 1.48500 * 109.47415 * 239.99912 * 18 16 14 22 22 C 1.52998 * 117.49943 * 279.50896 * 13 12 11 23 23 C 1.53004 * 117.50081 * 210.84928 * 13 12 11 24 24 C 1.52996 * 109.47161 * 60.00428 * 5 4 2 25 25 C 1.53005 * 109.46563 * 299.99983 * 24 5 4 26 26 H 1.08996 * 109.47441 * 299.99913 * 25 24 5 27 27 C 1.53005 * 109.46977 * 180.02562 * 25 24 5 28 28 C 1.52997 * 109.47319 * 60.00453 * 25 24 5 29 29 H 1.09003 * 109.46656 * 300.00166 * 1 2 3 30 30 H 1.08998 * 109.47366 * 59.99804 * 1 2 3 31 31 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47461 * 299.99993 * 4 2 1 33 33 H 1.08996 * 109.47548 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47291 * 299.99977 * 5 4 2 35 35 H 0.96999 * 120.00155 * 334.99381 * 6 5 4 36 36 H 0.96993 * 119.99940 * 4.79906 * 11 9 7 37 37 H 1.08995 * 109.47025 * 65.22604 * 12 11 9 38 38 H 1.09001 * 109.47463 * 305.22263 * 12 11 9 39 39 H 0.96998 * 120.00133 * 185.00155 * 17 16 14 40 40 H 1.09004 * 117.49878 * 0.02562 * 22 13 12 41 41 H 1.09007 * 117.49463 * 145.01791 * 22 13 12 42 42 H 1.08996 * 117.49711 * 214.98098 * 23 13 12 43 43 H 1.09000 * 117.49583 * 359.97438 * 23 13 12 44 44 H 1.09000 * 109.47386 * 59.99607 * 24 5 4 45 45 H 1.09000 * 109.47454 * 180.02562 * 24 5 4 46 46 H 1.09001 * 109.47258 * 300.00497 * 27 25 24 47 47 H 1.09001 * 109.46792 * 59.99863 * 27 25 24 48 48 H 1.08995 * 109.47494 * 179.97438 * 27 25 24 49 49 H 1.08998 * 109.47263 * 180.02562 * 28 25 24 50 50 H 1.08996 * 109.47305 * 59.99377 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 7 2.0180 -2.8541 2.4457 7 6 1.3409 -3.9109 2.9371 8 8 0.3276 -4.2907 2.3882 9 6 1.8390 -4.6155 4.1574 10 8 2.7992 -4.1816 4.7592 11 7 1.2215 -5.7330 4.5894 12 6 1.6424 -6.3645 5.8424 13 6 0.8774 -7.6754 6.0349 14 6 1.1660 -8.7514 5.0200 15 1 0.6159 -8.7788 4.0909 16 6 2.1320 -9.7008 5.2774 17 7 2.8785 -9.6037 6.3559 18 14 2.3807 -11.1250 4.0946 19 1 1.4211 -11.0057 2.9676 20 1 3.7691 -11.0948 3.5684 21 1 2.1493 -12.4069 4.8075 22 6 -0.5472 -7.5877 6.5859 23 6 0.5842 -8.1182 7.4699 24 6 2.0401 -2.8850 0.0001 25 6 1.5300 -2.1637 -1.2492 26 1 0.4400 -2.1637 -1.2492 27 6 2.0395 -2.8853 -2.4985 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -0.2073 2.1393 33 1 3.1300 -0.7208 1.2494 34 1 0.4400 -2.1638 1.2493 35 1 2.8283 -2.5508 2.8842 36 1 0.4986 -6.1190 4.0706 37 1 1.4309 -5.6946 6.6758 38 1 2.7122 -6.5703 5.8042 39 1 3.6055 -10.2294 6.5005 40 1 -0.9397 -6.5959 6.8108 41 1 -1.2757 -8.3084 6.2144 42 1 0.5997 -9.1877 7.6796 43 1 0.9368 -7.4757 8.2767 44 1 3.1301 -2.8849 0.0000 45 1 1.6764 -3.9125 -0.0002 46 1 3.1295 -2.8858 -2.4987 47 1 1.6758 -3.9128 -2.4982 48 1 1.6758 -2.3718 -3.3885 49 1 1.6763 -0.2072 -2.1390 50 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117379728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:11 Heat of formation + Delta-G solvation = -95.216059 kcal Electronic energy + Delta-G solvation = -27798.944956 eV Core-core repulsion = 24017.847489 eV Total energy + Delta-G solvation = -3781.097466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82786 -40.50596 -39.31189 -38.47742 -36.00469 -34.90028 -34.04925 -33.93611 -31.08150 -28.71203 -27.70263 -27.43853 -27.35212 -25.19576 -23.01323 -22.71927 -22.02870 -21.43280 -21.26529 -19.96440 -19.13062 -18.08763 -17.82535 -16.99823 -16.91341 -16.65042 -16.34107 -15.95108 -15.86149 -15.38329 -15.30601 -14.82778 -14.75310 -14.60136 -14.38952 -14.29722 -13.72320 -13.51135 -13.45385 -13.15338 -12.93544 -12.87501 -12.78762 -12.75757 -12.54005 -12.38060 -12.29355 -12.02859 -12.00529 -11.79404 -11.49637 -11.42808 -11.28998 -10.94059 -10.88155 -10.68671 -10.43577 -10.23687 -10.15839 -9.94121 -8.12207 -6.25185 0.37668 1.37147 1.38740 1.42516 1.52053 2.17106 2.40520 2.69541 3.14272 3.40982 3.58707 3.64139 3.74010 3.91895 4.07492 4.14576 4.20051 4.34608 4.37529 4.40427 4.51331 4.55611 4.60535 4.66631 4.72662 4.76329 4.81779 4.89646 4.92367 4.96960 5.01807 5.02161 5.06918 5.15201 5.23495 5.27086 5.28628 5.29844 5.34563 5.42129 5.44767 5.48500 5.56407 5.61707 5.67962 5.75108 6.01728 6.34729 6.45699 6.78642 6.81715 7.00020 7.43937 8.94689 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.002800 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.631469 B = 9996.937865 C =10910.695367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.092 0.908 4 C -0.118 4.118 5 C 0.140 3.860 6 N -0.686 5.686 7 C 0.515 3.485 8 O -0.541 6.541 9 C 0.495 3.505 10 O -0.557 6.557 11 N -0.669 5.669 12 C 0.174 3.826 13 C -0.004 4.004 14 C -0.508 4.508 15 H 0.056 0.944 16 C 0.027 3.973 17 N -0.903 5.903 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.281 1.281 22 C -0.183 4.183 23 C -0.142 4.142 24 C -0.123 4.123 25 C -0.088 4.088 26 H 0.070 0.930 27 C -0.146 4.146 28 C -0.107 4.107 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.418 0.582 36 H 0.414 0.586 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 20.357 -14.286 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.101 4.101 3 H 0.111 0.889 4 C -0.156 4.156 5 C 0.037 3.963 6 N -0.338 5.338 7 C 0.296 3.704 8 O -0.418 6.418 9 C 0.275 3.725 10 O -0.436 6.436 11 N -0.319 5.319 12 C 0.050 3.950 13 C -0.005 4.005 14 C -0.546 4.546 15 H 0.074 0.926 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.220 4.220 23 C -0.180 4.180 24 C -0.162 4.162 25 C -0.107 4.107 26 H 0.088 0.912 27 C -0.204 4.204 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.250 0.750 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.023 20.258 -14.098 24.763 hybrid contribution 0.458 -1.460 -0.149 1.538 sum -1.564 18.798 -14.247 23.639 Atomic orbital electron populations 1.21992 0.95418 1.01692 1.02234 1.21054 0.95814 0.99804 0.93414 0.88945 1.21861 1.01995 0.92063 0.99672 1.21324 0.99830 0.92464 0.82674 1.45889 1.28856 1.29766 1.29295 1.19998 0.84176 0.81887 0.84389 1.90735 1.25228 1.65481 1.60358 1.20413 0.83669 0.82433 0.85967 1.90698 1.27117 1.66916 1.58910 1.45778 1.36650 1.24641 1.24811 1.20869 0.98331 0.92526 0.83223 1.19079 0.93672 0.92911 0.94826 1.20666 1.20874 1.10163 1.02852 0.92604 1.25645 0.95765 0.99554 0.96398 1.70094 1.18666 1.38048 1.27266 0.85685 0.77751 0.79859 0.79432 1.19205 1.21086 1.20660 1.23082 0.92156 1.01147 1.05652 1.22353 1.02589 0.99391 0.93682 1.21978 1.01297 0.98689 0.94239 1.21109 1.00544 0.95538 0.93460 0.91191 1.21813 1.01349 0.99871 0.97328 1.21653 1.01016 0.93824 0.97930 0.92655 0.91606 0.93267 0.90711 0.89965 0.90060 0.74523 0.74977 0.92775 0.93916 0.93061 0.89063 0.90008 0.91660 0.90517 0.91102 0.93962 0.92398 0.93768 0.91388 0.90522 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.50 71.98 0.61 -1.28 16 2 C -0.08 -0.89 3.19 -10.80 -0.03 -0.92 16 3 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 4 C -0.12 -1.59 4.92 30.59 0.15 -1.44 16 5 C 0.14 2.79 2.18 44.99 0.10 2.89 16 6 N -0.69 -16.86 5.07 -443.85 -2.25 -19.11 16 7 C 0.52 16.72 7.85 87.27 0.69 17.41 16 8 O -0.54 -19.56 16.16 -3.24 -0.05 -19.62 16 9 C 0.49 18.67 7.88 87.27 0.69 19.36 16 10 O -0.56 -22.82 16.46 -3.24 -0.05 -22.88 16 11 N -0.67 -26.90 5.44 -464.42 -2.53 -29.43 16 12 C 0.17 7.77 5.53 86.38 0.48 8.25 16 13 C 0.00 -0.19 1.52 -52.93 -0.08 -0.27 16 14 C -0.51 -26.70 8.77 25.60 0.22 -26.47 16 15 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 16 C 0.03 1.47 5.36 84.65 0.45 1.92 16 17 N -0.90 -50.70 12.40 21.45 0.27 -50.43 16 18 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.18 -7.42 9.96 30.62 0.30 -7.11 16 23 C -0.14 -6.44 8.95 30.62 0.27 -6.17 16 24 C -0.12 -2.44 4.78 30.59 0.15 -2.29 16 25 C -0.09 -1.32 2.44 -10.79 -0.03 -1.35 16 26 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 27 C -0.15 -2.09 9.19 71.98 0.66 -1.43 16 28 C -0.11 -1.16 4.73 30.59 0.14 -1.02 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.75 4.81 -2.39 -0.01 0.73 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.88 5.86 -2.39 -0.01 1.86 16 35 H 0.42 9.21 8.08 -92.71 -0.75 8.46 16 36 H 0.41 16.35 7.96 -92.71 -0.74 15.61 16 37 H 0.05 2.27 8.09 -2.39 -0.02 2.25 16 38 H 0.04 2.19 8.10 -2.39 -0.02 2.17 16 39 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 42 H 0.06 3.25 7.99 -2.39 -0.02 3.23 16 43 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -62.00 397.75 1.64 -60.36 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.55 Total: 35.93 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 4.78 Total: 0.07 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.51 Total: -98.97 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.11 Total: -42.49 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.00 1.64 -60.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117379728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.857 kcal (2) G-P(sol) polarization free energy of solvation -61.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds