Wall clock time and date at job start Tue Mar 31 2020 14:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46902 * 2 1 4 4 C 1.53000 * 109.47138 * 120.00290 * 2 1 3 5 5 H 1.09001 * 109.46870 * 298.58858 * 4 2 1 6 6 C 1.53001 * 109.46743 * 178.59324 * 4 2 1 7 7 N 1.46491 * 109.47187 * 58.59227 * 4 2 1 8 8 C 1.34782 * 119.99826 * 242.19023 * 7 4 2 9 9 O 1.21355 * 120.00001 * 5.85209 * 8 7 4 10 10 C 1.49452 * 119.99968 * 185.84338 * 8 7 4 11 11 O 1.21342 * 120.00002 * 3.66082 * 10 8 7 12 12 N 1.34783 * 119.99586 * 183.65304 * 10 8 7 13 13 C 1.46509 * 119.99456 * 184.99361 * 12 10 8 14 14 C 1.52993 * 109.46757 * 184.81749 * 13 12 10 15 15 C 1.50700 * 115.55252 * 305.33547 * 14 13 12 16 16 H 1.07995 * 120.00607 * 144.10259 * 15 14 13 17 17 C 1.37885 * 119.99723 * 324.10014 * 15 14 13 18 18 N 1.31514 * 120.00139 * 3.19197 * 17 15 14 19 19 Si 1.86797 * 119.99860 * 183.18769 * 17 15 14 20 20 H 1.48505 * 109.47049 * 60.00218 * 19 17 15 21 21 H 1.48494 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47350 * 300.00106 * 19 17 15 23 23 C 1.52995 * 117.49920 * 159.66463 * 14 13 12 24 24 C 1.53004 * 117.50320 * 91.00580 * 14 13 12 25 25 C 1.46494 * 120.00409 * 62.19373 * 7 4 2 26 26 C 1.52995 * 117.49933 * 66.79278 * 25 7 4 27 27 C 1.52998 * 117.49824 * 358.13508 * 25 7 4 28 28 H 1.08997 * 109.46834 * 60.00019 * 1 2 3 29 29 H 1.08996 * 109.46985 * 299.99806 * 1 2 3 30 30 H 1.08994 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46985 * 240.00194 * 2 1 3 32 32 H 1.08996 * 109.47142 * 60.00291 * 3 2 1 33 33 H 1.08999 * 109.46867 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46895 * 299.99899 * 3 2 1 35 35 H 1.08998 * 109.47175 * 306.16564 * 6 4 2 36 36 H 1.08994 * 109.47311 * 66.16954 * 6 4 2 37 37 H 1.08999 * 109.46715 * 186.16493 * 6 4 2 38 38 H 0.96996 * 120.00421 * 5.00365 * 12 10 8 39 39 H 1.08996 * 109.47016 * 304.81464 * 13 12 10 40 40 H 1.08996 * 109.46680 * 64.81736 * 13 12 10 41 41 H 0.96993 * 119.99717 * 175.00286 * 18 17 15 42 42 H 1.09003 * 117.49770 * 0.02562 * 23 14 13 43 43 H 1.09004 * 117.50037 * 145.01575 * 23 14 13 44 44 H 1.09000 * 117.50207 * 214.98170 * 24 14 13 45 45 H 1.09008 * 117.48852 * 359.97402 * 24 14 13 46 46 H 1.09006 * 115.54922 * 212.46588 * 25 7 4 47 47 H 1.09006 * 117.49868 * 0.02562 * 26 25 7 48 48 H 1.09009 * 117.49944 * 145.02424 * 26 25 7 49 49 H 1.09000 * 117.50268 * 214.98180 * 27 25 7 50 50 H 1.09004 * 117.49894 * 359.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6975 -0.1931 2.1390 6 6 3.5697 -0.7520 1.2315 7 7 1.5243 -2.0923 1.2662 8 6 0.7165 -2.4960 2.2668 9 8 0.3307 -1.6973 3.0950 10 6 0.2959 -3.9273 2.3563 11 8 0.7341 -4.7389 1.5679 12 7 -0.5701 -4.3166 3.3130 13 6 -0.8982 -5.7358 3.4704 14 6 -1.9847 -5.8927 4.5360 15 6 -1.6763 -5.2738 5.8750 16 1 -2.4655 -4.8167 6.4533 17 6 -0.3863 -5.2910 6.3617 18 7 0.5857 -5.7912 5.6306 19 14 -0.0194 -4.6038 8.0595 20 1 -0.7968 -5.3564 9.0767 21 1 1.4315 -4.7387 8.3452 22 1 -0.4013 -3.1695 8.1061 23 6 -2.8012 -7.1866 4.5272 24 6 -3.4413 -5.8742 4.0680 25 6 1.8864 -3.0246 0.1958 26 6 3.3503 -3.4591 0.1027 27 6 2.7708 -2.4937 -0.9341 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.9136 -1.1820 0.2908 36 1 3.9546 0.2630 1.3293 37 1 3.9304 -1.3589 2.0619 38 1 -0.9762 -3.6572 3.8970 39 1 -1.2596 -6.1325 2.5218 40 1 -0.0067 -6.2828 3.7771 41 1 1.5030 -5.7380 5.9414 42 1 -2.5639 -7.9262 3.7624 43 1 -3.1155 -7.5900 5.4898 44 1 -4.1765 -5.4146 4.7286 45 1 -3.6253 -5.7497 3.0008 46 1 1.1254 -3.7605 -0.0641 47 1 4.0441 -3.0517 0.8383 48 1 3.5526 -4.4809 -0.2188 49 1 2.5921 -2.8806 -1.9374 50 1 3.0830 -1.4507 -0.8813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117685573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:43 Heat of formation + Delta-G solvation = -10.603425 kcal Electronic energy + Delta-G solvation = -29282.823007 eV Core-core repulsion = 25505.394620 eV Total energy + Delta-G solvation = -3777.428387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08619 -40.23991 -38.99001 -38.45481 -36.51997 -34.96356 -34.17303 -33.70491 -31.29712 -28.54963 -27.87690 -27.47110 -25.52611 -24.07739 -23.64288 -22.99852 -22.71030 -21.25039 -20.94880 -20.63139 -19.03511 -18.06390 -17.90988 -17.07211 -16.69122 -16.50902 -16.30037 -15.87602 -15.50970 -15.48986 -15.20342 -14.81000 -14.68033 -14.51682 -14.32713 -14.09870 -13.61795 -13.35035 -13.33080 -13.23608 -12.93820 -12.91129 -12.67296 -12.53686 -12.38607 -12.32844 -12.22696 -12.12170 -12.06314 -11.89408 -11.61043 -11.55900 -11.38893 -10.98299 -10.94837 -10.71528 -10.32535 -10.08705 -9.81601 -9.53953 -7.99646 -6.23339 0.47902 1.38787 1.41591 1.42904 1.48351 2.24213 2.38939 2.57459 2.94927 3.02049 3.47658 3.63706 3.70403 3.83368 3.92506 4.04415 4.08539 4.16678 4.22923 4.34952 4.43400 4.49851 4.56524 4.66700 4.70748 4.76701 4.78545 4.80404 4.90162 4.93805 4.94982 4.95270 5.02586 5.08318 5.09940 5.16483 5.23863 5.26528 5.29513 5.35973 5.45833 5.49347 5.52344 5.57149 5.68383 5.92842 6.06318 6.33636 6.49813 6.76786 6.88555 7.19122 7.41905 8.87068 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003903 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.520608 B = 7171.426350 C = 7609.251036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.130 3.870 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.542 5.542 8 C 0.507 3.493 9 O -0.550 6.550 10 C 0.490 3.510 11 O -0.549 6.549 12 N -0.651 5.651 13 C 0.175 3.825 14 C 0.002 3.998 15 C -0.506 4.506 16 H 0.056 0.944 17 C 0.037 3.963 18 N -0.891 5.891 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.190 4.190 24 C -0.189 4.189 25 C 0.054 3.946 26 C -0.192 4.192 27 C -0.173 4.173 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.406 0.594 39 H 0.034 0.966 40 H 0.088 0.912 41 H 0.258 0.742 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.130 0.870 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.122 0.878 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 11.122 -15.068 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.028 3.972 5 H 0.096 0.904 6 C -0.235 4.235 7 N -0.273 5.273 8 C 0.291 3.709 9 O -0.428 6.428 10 C 0.270 3.730 11 O -0.430 6.430 12 N -0.298 5.298 13 C 0.052 3.948 14 C 0.002 3.998 15 C -0.544 4.544 16 H 0.074 0.926 17 C -0.164 4.164 18 N -0.529 5.529 19 Si 0.771 3.229 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.202 1.202 23 C -0.228 4.228 24 C -0.226 4.226 25 C -0.050 4.050 26 C -0.230 4.230 27 C -0.210 4.210 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.241 0.759 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.147 0.853 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.140 0.860 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.212 10.866 -15.100 19.613 hybrid contribution -0.185 0.120 1.813 1.826 sum 6.027 10.986 -13.287 18.263 Atomic orbital electron populations 1.21748 0.95851 1.00636 1.01707 1.21773 0.95776 0.97640 0.97555 1.21854 1.02064 0.93675 1.02468 1.21493 0.95156 0.80164 1.00410 0.90439 1.22701 0.92985 1.04059 1.03715 1.47334 1.45489 1.12571 1.21888 1.20324 0.80048 0.88563 0.82002 1.90703 1.55769 1.55143 1.41229 1.20128 0.81037 0.89080 0.82722 1.90595 1.56155 1.54601 1.41600 1.45594 1.41424 1.10712 1.32023 1.20954 0.99658 0.80005 0.94214 1.19258 0.88127 0.97819 0.94620 1.20700 0.94196 1.37565 1.01914 0.92588 1.25529 0.96254 0.94720 0.99935 1.69954 0.99806 1.44952 1.38156 0.85809 0.76807 0.78892 0.81350 1.19527 1.21459 1.20174 1.22953 1.07338 0.91360 1.01185 1.22955 0.97875 1.02003 0.99776 1.22127 0.95659 0.95870 0.91312 1.23523 0.95895 1.00790 1.02779 1.24076 1.00883 1.01103 0.94905 0.90767 0.94254 0.94916 0.87818 0.93326 0.90653 0.90879 0.88606 0.88870 0.93877 0.75888 0.94823 0.89386 0.93263 0.90019 0.90361 0.89987 0.89625 0.85300 0.88477 0.88238 0.85957 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.02 71.98 0.65 -2.48 16 2 C -0.11 -1.97 2.22 -10.79 -0.02 -1.99 16 3 C -0.14 -1.91 8.88 71.98 0.64 -1.27 16 4 C 0.13 3.13 2.12 44.99 0.10 3.22 16 5 H 0.08 2.28 6.93 -2.39 -0.02 2.27 16 6 C -0.18 -3.32 7.26 71.98 0.52 -2.79 16 7 N -0.54 -16.44 1.89 -775.61 -1.47 -17.90 16 8 C 0.51 19.99 7.73 87.27 0.67 20.66 16 9 O -0.55 -24.05 15.84 -3.26 -0.05 -24.11 16 10 C 0.49 21.34 7.78 87.27 0.68 22.01 16 11 O -0.55 -24.25 13.32 -3.22 -0.04 -24.29 16 12 N -0.65 -30.06 5.20 -464.41 -2.41 -32.47 16 13 C 0.17 8.34 4.63 86.38 0.40 8.74 16 14 C 0.00 0.11 2.06 -52.93 -0.11 0.01 16 15 C -0.51 -26.36 8.31 25.60 0.21 -26.15 16 16 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 17 C 0.04 1.96 5.33 84.66 0.45 2.41 16 18 N -0.89 -48.77 10.22 21.45 0.22 -48.55 16 19 Si 0.94 43.12 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 C -0.19 -8.04 9.96 30.62 0.30 -7.74 16 24 C -0.19 -7.66 9.93 30.62 0.30 -7.36 16 25 C 0.05 1.45 4.83 44.99 0.22 1.67 16 26 C -0.19 -4.38 9.64 30.62 0.30 -4.08 16 27 C -0.17 -2.95 8.05 30.62 0.25 -2.70 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.86 7.57 -2.39 -0.02 0.84 16 31 H 0.10 1.56 4.62 -2.39 -0.01 1.55 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.76 6.60 -2.39 -0.02 0.75 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.10 1.45 3.80 -2.39 -0.01 1.44 16 36 H 0.09 1.30 6.80 -2.39 -0.02 1.29 16 37 H 0.04 0.98 7.68 -2.39 -0.02 0.97 16 38 H 0.41 19.46 7.44 -92.71 -0.69 18.77 16 39 H 0.03 1.54 8.05 -2.39 -0.02 1.52 16 40 H 0.09 4.79 5.89 -2.39 -0.01 4.77 16 41 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.19 16 43 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 46 H 0.13 4.06 6.04 -2.38 -0.01 4.05 16 47 H 0.10 2.24 6.06 -2.38 -0.01 2.23 16 48 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 49 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.13 1.82 3.21 -2.39 -0.01 1.81 16 Total: -1.00 -61.02 383.30 4.10 -56.92 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: 0.27 Total: 43.09 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.56 Total: 2.17 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.66 Total: -98.93 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.09 Total: -48.40 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -61.02 4.10 -56.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.319 kcal (2) G-P(sol) polarization free energy of solvation -61.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds