Wall clock time and date at job start Tue Mar 31 2020 14:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47080 * 207.10160 * 3 2 1 5 5 C 1.50699 * 109.54148 * 294.18626 * 4 3 2 6 6 O 1.21287 * 119.99393 * 235.24240 * 5 4 3 7 7 N 1.34773 * 120.00436 * 55.23906 * 5 4 3 8 8 C 1.46497 * 120.00395 * 184.62448 * 7 5 4 9 9 H 1.08996 * 109.46883 * 348.60749 * 8 7 5 10 10 C 1.52997 * 109.47215 * 228.60570 * 8 7 5 11 11 C 1.52999 * 109.46970 * 108.60586 * 8 7 5 12 12 C 1.52998 * 109.46997 * 285.76710 * 11 8 7 13 13 H 1.08998 * 109.47482 * 306.45881 * 12 11 8 14 14 C 1.53006 * 109.47152 * 186.45828 * 12 11 8 15 15 N 1.46502 * 109.46925 * 66.46397 * 12 11 8 16 16 C 1.36947 * 119.99667 * 206.96889 * 15 12 11 17 17 H 1.08000 * 120.00046 * 24.39337 * 16 15 12 18 18 C 1.38809 * 119.99620 * 204.39574 * 16 15 12 19 19 N 1.31616 * 120.00194 * 17.45990 * 18 16 15 20 20 Si 1.86802 * 119.99731 * 197.73605 * 18 16 15 21 21 H 1.48501 * 109.47009 * 179.72177 * 20 18 16 22 22 H 1.48497 * 109.47252 * 299.72861 * 20 18 16 23 23 H 1.48507 * 109.47013 * 59.72713 * 20 18 16 24 24 C 1.53173 * 109.54385 * 54.36046 * 4 3 2 25 25 C 1.53277 * 109.06389 * 176.84906 * 24 4 3 26 26 O 1.42903 * 109.46530 * 302.45055 * 25 24 4 27 27 C 1.42904 * 114.09725 * 61.15129 * 26 25 24 28 28 C 1.53089 * 109.41947 * 298.84791 * 27 26 25 29 29 H 4.44651 * 5.63405 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.47211 * 87.10216 * 3 2 1 31 31 H 1.08994 * 109.47523 * 327.10068 * 3 2 1 32 32 H 0.97004 * 119.99366 * 4.63532 * 7 5 4 33 33 H 1.09003 * 109.46974 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47341 * 299.99898 * 10 8 7 35 35 H 1.09001 * 109.47403 * 60.00288 * 10 8 7 36 36 H 1.08997 * 109.46908 * 165.77072 * 11 8 7 37 37 H 1.08998 * 109.47215 * 45.76564 * 11 8 7 38 38 H 1.08992 * 109.47347 * 300.00560 * 14 12 11 39 39 H 1.09005 * 109.46675 * 60.00405 * 14 12 11 40 40 H 1.08999 * 109.47330 * 179.97438 * 14 12 11 41 41 H 0.96994 * 120.00009 * 26.97088 * 15 12 11 42 42 H 0.96997 * 120.00243 * 358.63942 * 19 18 16 43 43 H 1.08996 * 109.52408 * 296.84878 * 24 4 3 44 44 H 1.09010 * 109.51745 * 57.03121 * 24 4 3 45 45 H 1.09003 * 109.46262 * 182.44789 * 25 24 4 46 46 H 1.09002 * 109.46413 * 62.45543 * 25 24 4 47 47 H 1.08998 * 109.47899 * 178.86107 * 27 26 25 48 48 H 1.09007 * 109.48717 * 58.83563 * 27 26 25 49 49 H 1.09007 * 109.51699 * 297.70311 * 28 27 26 50 50 H 1.08995 * 109.57456 * 177.54785 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1554 1.2850 0.6572 5 6 2.7743 2.4708 -0.1912 6 8 3.6286 3.2419 -0.5743 7 7 1.4843 2.6744 -0.5244 8 6 1.1257 3.7674 -1.4315 9 1 1.9865 4.4215 -1.5703 10 6 -0.0320 4.5683 -0.8324 11 6 0.7008 3.1898 -2.7830 12 6 1.9371 2.7000 -3.5397 13 1 2.6693 3.5052 -3.5994 14 6 1.5340 2.2715 -4.9521 15 7 2.5226 1.5589 -2.8317 16 6 3.8608 1.2932 -2.9498 17 1 4.5477 2.0852 -3.2092 18 6 4.3343 0.0060 -2.7362 19 7 3.5027 -1.0138 -2.7617 20 14 6.1506 -0.2780 -2.4048 21 1 6.3964 -1.7288 -2.2049 22 1 6.9463 0.2041 -3.5622 23 1 6.5531 0.4650 -1.1835 24 6 2.5331 1.4300 2.0493 25 6 3.1104 2.6769 2.7284 26 8 4.5336 2.5669 2.7953 27 6 5.1723 2.4751 1.5202 28 6 4.6798 1.2211 0.7933 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0093 -0.0511 -1.0264 31 1 3.0097 -0.8620 0.5581 32 1 0.7934 2.0972 -0.1633 33 1 -0.2985 5.3819 -1.5071 34 1 -0.8928 3.9142 -0.6935 35 1 0.2707 4.9798 0.1305 36 1 0.1999 3.9621 -3.3668 37 1 0.0183 2.3551 -2.6231 38 1 0.8018 1.4664 -4.8925 39 1 1.0984 3.1206 -5.4789 40 1 2.4148 1.9230 -5.4914 41 1 1.9624 0.9915 -2.2793 42 1 2.5559 -0.8640 -2.9102 43 1 1.4518 1.5307 1.9563 44 1 2.7677 0.5487 2.6466 45 1 2.7046 2.7623 3.7365 46 1 2.8409 3.5620 2.1521 47 1 6.2519 2.4150 1.6580 48 1 4.9301 3.3575 0.9278 49 1 4.9576 0.3358 1.3654 50 1 5.1322 1.1717 -0.1970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134583082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:27 Heat of formation + Delta-G solvation = -35.778010 kcal Electronic energy + Delta-G solvation = -31619.353486 eV Core-core repulsion = 27840.833447 eV Total energy + Delta-G solvation = -3778.520039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98334 -39.50608 -37.90785 -36.83404 -36.19866 -34.07537 -33.38080 -32.28669 -31.54734 -30.07378 -29.20456 -27.58571 -25.35111 -25.10920 -24.62609 -23.38965 -21.91155 -21.58783 -20.41853 -19.42642 -18.94659 -17.64818 -17.35246 -16.93304 -16.68560 -16.57578 -16.05424 -15.90598 -15.75766 -15.32191 -15.11026 -15.06411 -14.58939 -14.41430 -14.01898 -13.85043 -13.61041 -13.54476 -13.47940 -13.29046 -13.24421 -12.95944 -12.78729 -12.66852 -12.45521 -12.22681 -12.12828 -11.95453 -11.86775 -11.63796 -11.59432 -11.47372 -11.25005 -11.05395 -10.94618 -10.60784 -10.20748 -10.13387 -9.68321 -8.80349 -8.23293 -5.18758 1.54845 1.57940 1.77107 1.80868 1.98453 2.08420 2.50479 2.68337 2.93101 3.42684 3.42912 3.72745 3.75867 3.79887 3.89931 3.94338 4.06280 4.18940 4.23219 4.28989 4.35160 4.48289 4.51262 4.62055 4.66213 4.69895 4.75645 4.77017 4.77752 4.82872 4.86975 4.90856 5.01785 5.02978 5.05442 5.12537 5.16580 5.21974 5.26516 5.32073 5.39102 5.53355 5.61367 5.86978 5.93199 6.21681 6.62178 6.72402 6.82594 7.29586 7.63555 8.11094 8.39355 9.19940 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.008879 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.361028 B = 3152.769262 C = 4523.966633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.191 4.191 3 C -0.058 4.058 4 C -0.059 4.059 5 C 0.551 3.449 6 O -0.563 6.563 7 N -0.717 5.717 8 C 0.138 3.862 9 H 0.065 0.935 10 C -0.149 4.149 11 C -0.125 4.125 12 C 0.164 3.836 13 H 0.023 0.977 14 C -0.151 4.151 15 N -0.723 5.723 16 C -0.290 4.290 17 H 0.024 0.976 18 C -0.073 4.073 19 N -0.949 5.949 20 Si 1.074 2.926 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.264 1.264 24 C -0.138 4.138 25 C 0.059 3.941 26 O -0.392 6.392 27 C 0.057 3.943 28 C -0.141 4.141 29 H 0.255 0.745 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.400 0.600 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.021 0.979 41 H 0.365 0.635 42 H 0.248 0.752 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.124 0.876 46 H 0.036 0.964 47 H 0.099 0.901 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.832 7.363 9.321 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.191 4.191 3 C -0.094 4.094 4 C -0.062 4.062 5 C 0.338 3.662 6 O -0.441 6.441 7 N -0.372 5.372 8 C 0.033 3.967 9 H 0.084 0.916 10 C -0.207 4.207 11 C -0.164 4.164 12 C 0.055 3.945 13 H 0.041 0.959 14 C -0.211 4.211 15 N -0.366 5.366 16 C -0.423 4.423 17 H 0.042 0.958 18 C -0.267 4.267 19 N -0.596 5.596 20 Si 0.903 3.097 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.190 1.190 24 C -0.176 4.176 25 C -0.017 4.017 26 O -0.311 6.311 27 C -0.019 4.019 28 C -0.179 4.179 29 H 0.271 0.729 30 H 0.160 0.840 31 H 0.095 0.905 32 H 0.239 0.761 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.200 0.800 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.141 0.859 46 H 0.054 0.946 47 H 0.117 0.883 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.811 6.926 9.382 14.037 hybrid contribution -1.321 0.236 -0.977 1.660 sum -9.133 7.162 8.406 14.330 Atomic orbital electron populations 1.25574 0.96345 0.99699 1.01310 1.23185 0.94626 1.00702 1.00582 1.19654 0.86435 0.95835 1.07519 1.20657 0.96682 0.93272 0.95570 1.20031 0.82474 0.84911 0.78760 1.90519 1.49840 1.48249 1.55469 1.46163 1.07925 1.34276 1.48842 1.20957 0.98201 0.88521 0.89016 0.91646 1.22058 0.97027 1.00267 1.01351 1.22215 0.96930 1.01182 0.96053 1.20463 0.93334 0.89876 0.90802 0.95905 1.22259 0.99483 1.00486 0.98856 1.42495 1.06050 1.33038 1.55064 1.19816 0.84941 0.93826 1.43693 0.95829 1.26236 1.07686 0.91013 1.01741 1.70977 1.03971 1.30741 1.53932 0.83469 0.73262 0.75628 0.77383 1.21559 1.22289 1.19046 1.22355 1.00965 1.00593 0.93694 1.22732 0.80954 0.95623 1.02410 1.87828 1.19842 1.94390 1.29045 1.22762 0.97569 0.97486 0.84119 1.22200 0.94035 0.99561 1.02119 0.72873 0.84042 0.90493 0.76109 0.89753 0.90962 0.92503 0.88361 0.91903 0.94181 0.91397 0.96016 0.80033 0.94154 0.89370 0.89389 0.85860 0.94577 0.88327 0.91967 0.90554 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.55 17.86 74.32 1.33 -4.22 16 2 C -0.19 -6.39 8.66 31.12 0.27 -6.12 16 3 C -0.06 -2.28 4.39 28.79 0.13 -2.16 16 4 C -0.06 -2.12 0.51 -52.81 -0.03 -2.15 16 5 C 0.55 21.26 2.82 87.66 0.25 21.50 16 6 O -0.56 -25.74 12.50 -3.05 -0.04 -25.78 16 7 N -0.72 -23.24 3.30 -442.55 -1.46 -24.70 16 8 C 0.14 4.10 2.87 44.99 0.13 4.23 16 9 H 0.07 2.38 6.81 -2.39 -0.02 2.36 16 10 C -0.15 -3.01 9.47 71.98 0.68 -2.33 16 11 C -0.12 -3.74 4.51 30.59 0.14 -3.60 16 12 C 0.16 6.58 2.87 44.99 0.13 6.71 16 13 H 0.02 1.03 7.97 -2.39 -0.02 1.01 16 14 C -0.15 -5.70 9.51 71.98 0.68 -5.01 16 15 N -0.72 -33.94 2.44 -322.93 -0.79 -34.73 16 16 C -0.29 -15.74 8.38 84.03 0.70 -15.03 16 17 H 0.02 1.42 7.89 -2.91 -0.02 1.39 16 18 C -0.07 -4.01 3.91 84.86 0.33 -3.67 16 19 N -0.95 -54.15 12.09 21.65 0.26 -53.89 16 20 Si 1.07 51.55 28.60 68.60 1.96 53.51 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.26 -11.79 5.75 99.48 0.57 -11.22 16 24 C -0.14 -3.91 4.49 30.75 0.14 -3.78 16 25 C 0.06 1.63 6.62 72.07 0.48 2.11 16 26 O -0.39 -12.79 10.77 -148.98 -1.60 -14.39 16 27 C 0.06 2.04 6.55 72.01 0.47 2.51 16 28 C -0.14 -5.49 4.58 30.68 0.14 -5.35 16 29 H 0.26 4.06 7.80 -4.41 -0.03 4.03 16 30 H 0.14 6.62 1.87 -2.38 0.00 6.61 16 31 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.40 11.55 4.72 -92.71 -0.44 11.11 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 2.33 8.06 -2.39 -0.02 2.31 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.37 16.99 4.19 -92.71 -0.39 16.60 16 42 H 0.25 14.44 7.34 -92.71 -0.68 13.76 16 43 H 0.09 2.19 6.79 -2.39 -0.02 2.17 16 44 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.12 2.54 8.14 -2.39 -0.02 2.53 16 46 H 0.04 1.07 7.38 -2.39 -0.02 1.06 16 47 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.06 2.50 5.64 -2.38 -0.01 2.48 16 49 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 50 H 0.07 3.18 5.00 -2.39 -0.01 3.17 16 Total: -1.00 -66.82 366.82 4.37 -62.44 By element: Atomic # 1 Polarization: 53.82 SS G_CDS: 0.07 Total: 53.89 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.97 Total: -16.35 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -1.99 Total: -113.32 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.64 Total: -40.17 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.96 Total: 53.51 kcal Total: -66.82 4.37 -62.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134583082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.664 kcal (2) G-P(sol) polarization free energy of solvation -66.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds