Wall clock time and date at job start Tue Mar 31 2020 14:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 C 1.50703 * 109.47219 * 120.00006 * 2 1 3 5 5 C 1.40361 * 126.64732 * 300.02677 * 4 2 1 6 6 C 1.35125 * 107.11522 * 179.97438 * 5 4 2 7 7 O 1.33925 * 108.76978 * 359.75488 * 6 5 4 8 8 C 1.34917 * 109.38126 * 0.40471 * 7 6 5 9 9 C 1.46660 * 125.98821 * 179.86561 * 8 7 6 10 10 O 1.21691 * 120.00515 * 179.68974 * 9 8 7 11 11 N 1.34781 * 119.99913 * 359.68722 * 9 8 7 12 12 C 1.46501 * 120.00231 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46643 * 324.99984 * 12 11 9 14 14 C 1.53002 * 109.47013 * 84.99743 * 12 11 9 15 15 C 1.52996 * 109.47049 * 204.99988 * 12 11 9 16 16 C 1.52997 * 109.47131 * 65.00110 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00627 * 179.97438 * 19 18 17 21 21 H 1.08012 * 119.99691 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00809 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00541 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47105 * 59.99692 * 24 22 20 26 26 H 1.48496 * 109.47068 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46941 * 299.99925 * 24 22 20 28 28 H 1.09003 * 109.47164 * 299.99668 * 1 2 3 29 29 H 1.08996 * 109.47452 * 60.00023 * 1 2 3 30 30 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47164 * 240.00332 * 2 1 3 32 32 H 1.09003 * 109.46911 * 60.00177 * 3 2 1 33 33 H 1.09003 * 109.46904 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47411 * 299.99964 * 3 2 1 35 35 H 1.08003 * 126.44133 * 359.97438 * 5 4 2 36 36 H 1.08008 * 125.61712 * 180.02562 * 6 5 4 37 37 H 0.97003 * 120.00102 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.46646 * 179.97438 * 14 12 11 39 39 H 1.08992 * 109.47133 * 300.00613 * 14 12 11 40 40 H 1.09001 * 109.46843 * 60.00279 * 14 12 11 41 41 H 1.08996 * 109.47452 * 305.00111 * 15 12 11 42 42 H 1.09001 * 109.46997 * 184.99684 * 15 12 11 43 43 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 44 44 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 45 45 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 46 46 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 47 47 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 48 48 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 49 49 H 0.97006 * 119.99755 * 359.97438 * 19 18 17 50 50 H 0.97000 * 120.00324 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7803 -0.3549 2.5647 6 6 2.4175 -1.2566 3.3437 7 8 3.0386 -2.1439 2.5560 8 6 2.8204 -1.8250 1.2634 9 6 3.3342 -2.5518 0.0978 10 8 3.0639 -2.1695 -1.0255 11 7 4.1059 -3.6432 0.2706 12 6 4.6196 -4.3690 -0.8937 13 1 3.8796 -4.3429 -1.6936 14 6 5.9141 -3.7103 -1.3747 15 6 4.9003 -5.8221 -0.5058 16 6 3.5858 -6.5163 -0.1438 17 6 3.8664 -7.9697 0.2436 18 6 2.5519 -8.6641 0.6049 19 7 2.8204 -10.0558 0.9752 20 6 1.7885 -10.8787 1.3399 21 1 0.7765 -10.5016 1.3550 22 6 2.0429 -12.1973 1.6913 23 7 3.2762 -12.6567 1.6735 24 14 0.6351 -13.3200 2.1881 25 1 -0.3315 -13.4279 1.0660 26 1 1.1677 -14.6674 2.5134 27 1 -0.0501 -12.7572 3.3793 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.1884 0.4820 2.9048 36 1 2.4213 -1.2635 4.4237 37 1 4.3217 -3.9478 1.1659 38 1 6.2966 -4.2506 -2.2407 39 1 5.7142 -2.6751 -1.6510 40 1 6.6541 -3.7364 -0.5748 41 1 5.5720 -5.8459 0.3523 42 1 5.3649 -6.3391 -1.3454 43 1 2.9140 -6.4927 -1.0019 44 1 3.1211 -5.9994 0.6958 45 1 4.3308 -8.4864 -0.5963 46 1 4.5383 -7.9938 1.1015 47 1 2.0869 -8.1476 1.4447 48 1 1.8803 -8.6399 -0.2533 49 1 3.7294 -10.3944 0.9621 50 1 3.4542 -13.5782 1.9186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174888970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:58 Heat of formation + Delta-G solvation = -65.622364 kcal Electronic energy + Delta-G solvation = -26872.296000 eV Core-core repulsion = 23092.481813 eV Total energy + Delta-G solvation = -3779.814187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.70406 -40.75325 -38.17406 -37.21276 -36.69146 -34.80281 -33.15338 -32.72199 -31.92147 -30.33990 -28.83706 -28.01532 -26.00962 -24.92808 -23.68115 -23.49925 -22.09763 -21.94804 -21.49700 -20.63540 -19.16360 -19.05773 -17.48783 -17.31929 -16.93819 -16.69290 -16.29811 -15.82922 -15.73796 -15.41888 -15.26930 -15.16720 -14.82029 -14.61502 -14.21805 -14.12726 -14.05997 -14.03751 -13.46439 -13.27074 -13.07338 -13.05084 -12.90242 -12.84827 -12.47251 -12.35526 -12.21325 -12.20335 -12.18521 -11.95710 -11.89870 -11.84637 -11.50258 -11.42369 -10.94604 -10.92903 -10.67135 -10.24772 -9.56023 -9.03261 -7.97566 -5.27232 0.04484 1.42410 1.45468 1.49237 1.55570 1.71883 2.10407 2.25815 2.54409 3.35241 3.55636 3.64534 3.78367 3.85011 4.00375 4.03011 4.12333 4.28152 4.31697 4.32695 4.38834 4.41497 4.55041 4.58079 4.62640 4.73292 4.77042 4.78099 4.85080 4.90308 4.94892 4.96444 4.97597 4.99820 5.03198 5.08604 5.18346 5.24371 5.29896 5.34829 5.36707 5.41074 5.43863 5.46920 5.50607 5.57809 5.89589 6.25090 6.45062 7.03685 7.30646 8.06887 8.30935 9.25787 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014529 B = 0.002195 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.765939 B =12752.126042 C =13746.898181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.132 4.132 4 C -0.080 4.080 5 C -0.232 4.232 6 C 0.010 3.990 7 O -0.172 6.172 8 C -0.120 4.120 9 C 0.601 3.399 10 O -0.552 6.552 11 N -0.705 5.705 12 C 0.143 3.857 13 H 0.075 0.925 14 C -0.157 4.157 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.148 3.852 19 N -0.749 5.749 20 C -0.252 4.252 21 H 0.072 0.928 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.977 3.023 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.178 0.822 36 H 0.251 0.749 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.013 0.987 49 H 0.374 0.626 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 31.524 0.207 31.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 C -0.190 4.190 4 C -0.083 4.083 5 C -0.250 4.250 6 C -0.059 4.059 7 O -0.068 6.068 8 C -0.171 4.171 9 C 0.388 3.612 10 O -0.433 6.433 11 N -0.355 5.355 12 C 0.039 3.961 13 H 0.093 0.907 14 C -0.215 4.215 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.149 4.149 18 C 0.022 3.978 19 N -0.392 5.392 20 C -0.384 4.384 21 H 0.090 0.910 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.805 3.195 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.195 0.805 36 H 0.267 0.733 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.206 0.794 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.696 31.463 -0.501 31.513 hybrid contribution -0.386 -1.112 0.697 1.368 sum 1.310 30.351 0.196 30.380 Atomic orbital electron populations 1.21742 0.93200 1.01357 1.02908 1.20013 0.96621 0.96508 0.94328 1.21726 1.00423 0.93929 1.02886 1.20906 0.96071 0.94086 0.97286 1.21977 1.07259 1.04663 0.91124 1.25265 0.94061 0.88104 0.98490 1.84061 1.59785 1.47516 1.15412 1.21758 1.10426 1.02150 0.82777 1.16729 0.78056 0.80300 0.86071 1.90773 1.60699 1.68070 1.23769 1.46026 1.50569 1.27627 1.11282 1.21088 0.96301 0.91083 0.87589 0.90681 1.22121 0.96470 1.00520 1.02404 1.21853 0.97445 0.92560 1.03560 1.21429 0.98000 0.93760 1.01205 1.21591 0.96425 0.95731 1.01197 1.20848 0.96691 0.84211 0.96074 1.42618 1.06869 1.08127 1.81542 1.19615 0.89554 0.92585 1.36646 0.90966 1.25635 0.99097 0.98888 1.03301 1.69811 1.19842 1.15887 1.56405 0.85161 0.78336 0.77654 0.78309 1.20386 1.21779 1.20256 0.91249 0.91246 0.94169 0.89912 0.91268 0.93729 0.91312 0.80506 0.73315 0.75180 0.89973 0.93643 0.91337 0.89935 0.88914 0.92393 0.92181 0.92119 0.91933 0.96696 0.96879 0.79369 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.09 71.98 0.65 -1.53 16 2 C -0.06 -1.09 3.19 -11.54 -0.04 -1.12 16 3 C -0.13 -1.96 9.09 71.98 0.65 -1.31 16 4 C -0.08 -1.62 4.87 -19.74 -0.10 -1.71 16 5 C -0.23 -3.23 10.41 22.07 0.23 -3.00 16 6 C 0.01 0.12 12.08 67.10 0.81 0.93 16 7 O -0.17 -3.22 10.40 -5.02 -0.05 -3.27 16 8 C -0.12 -2.70 7.13 24.07 0.17 -2.53 16 9 C 0.60 15.01 7.75 86.44 0.67 15.68 16 10 O -0.55 -16.60 14.07 -4.32 -0.06 -16.66 16 11 N -0.70 -14.35 4.53 -446.52 -2.02 -16.37 16 12 C 0.14 2.77 2.57 44.99 0.12 2.88 16 13 H 0.08 1.73 7.58 -2.39 -0.02 1.72 16 14 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 15 C -0.12 -2.14 4.75 30.59 0.15 -1.99 16 16 C -0.11 -2.58 5.10 30.60 0.16 -2.43 16 17 C -0.11 -3.52 5.33 30.60 0.16 -3.36 16 18 C 0.15 6.20 6.26 86.38 0.54 6.74 16 19 N -0.75 -39.88 5.60 -343.46 -1.92 -41.81 16 20 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 21 H 0.07 4.05 7.83 -2.90 -0.02 4.03 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 23 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 24 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H 0.07 0.89 8.05 -2.39 -0.02 0.87 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 2.08 5.48 -2.39 -0.01 2.07 16 32 H 0.07 0.80 8.05 -2.39 -0.02 0.78 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.25 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.41 7.18 8.36 -92.71 -0.77 6.40 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.48 7.75 -2.39 -0.02 1.46 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.37 20.87 7.67 -92.70 -0.71 20.16 16 50 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -73.50 410.32 3.85 -69.65 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.57 Total: 32.16 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 6.17 Total: -12.59 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -3.66 Total: -118.24 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.11 Total: -19.94 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -73.50 3.85 -69.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174888970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.028 kcal (2) G-P(sol) polarization free energy of solvation -73.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds